메뉴 건너뛰기




Volumn 8, Issue 3, 1997, Pages 274-288

Internal ribosome entry sites within the RNA genomes of hepatitis C virus and other flaviviruses

Author keywords

IRES; Ribosome; RNA structure; Translation; Virus classification

Indexed keywords

CIS ACTING ELEMENT; TRANS ACTING FACTOR; VIRUS PROTEIN; VIRUS RNA;

EID: 0031418466     PISSN: 10445773     EISSN: None     Source Type: Journal    
DOI: 10.1006/smvy.1997.0129     Document Type: Article
Times cited : (71)

References (53)
  • 1
    • 0021863828 scopus 로고
    • Nucleotide sequence of yellow fever virus: Implications for flavivirus gene expression and evolution
    • Rice C. M., Lenches E. M., Eddy S. R., Shin S. J., Sheets R. L., Strauss J. H. Nucleotide sequence of yellow fever virus: implications for flavivirus gene expression and evolution. Science. 229:1985;726-733.
    • (1985) Science , vol.229 , pp. 726-733
    • Rice, C.M.1    Lenches, E.M.2    Eddy, S.R.3    Shin, S.J.4    Sheets, R.L.5    Strauss, J.H.6
  • 2
    • 0024509701 scopus 로고
    • Isolation of a cDNA clone derived from a blood-borne non-A, non-B viral hepatitis genome
    • Choo Q-L., Kuo G., Weiner A. J., Overby L. R., Bradley D. W., Houghton M. Isolation of a cDNA clone derived from a blood-borne non-A, non-B viral hepatitis genome. Science. 244:1989;359-362.
    • (1989) Science , vol.244 , pp. 359-362
    • Choo, Q.-L.1    Kuo, G.2    Weiner, A.J.3    Overby, L.R.4    Bradley, D.W.5    Houghton, M.6
  • 3
    • 0026513651 scopus 로고
    • Internal ribosome entry site within hepatitis C virus RNA
    • Tsukiyama-Kohara K., Iizuka N., Kohara M., Nomoto A. Internal ribosome entry site within hepatitis C virus RNA. J. Virol. 66:1992;1476-1483.
    • (1992) J. Virol. , vol.66 , pp. 1476-1483
    • Tsukiyama-Kohara, K.1    Iizuka, N.2    Kohara, M.3    Nomoto, A.4
  • 4
    • 0027153210 scopus 로고
    • Translation of human hepatitis C virus RNA in cultured cells is mediated by an internal ribosome-binding mechanism
    • Wang C., Sarnow P., Siddiqui A. Translation of human hepatitis C virus RNA in cultured cells is mediated by an internal ribosome-binding mechanism. J. Virol. 67:1993;3338-3344.
    • (1993) J. Virol. , vol.67 , pp. 3338-3344
    • Wang, C.1    Sarnow, P.2    Siddiqui, A.3
  • 5
    • 0029791890 scopus 로고    scopus 로고
    • Translation initiation in GB viruses A and C: Evidence for internal ribosome entry and implications on genome organization
    • Simons J. N., Desai S. M., Schultz D. E., Lemon S. M., Mushahwar I. K. Translation initiation in GB viruses A and C: Evidence for internal ribosome entry and implications on genome organization. J. Virol. 70:1996;6126-6135.
    • (1996) J. Virol. , vol.70 , pp. 6126-6135
    • Simons, J.N.1    Desai, S.M.2    Schultz, D.E.3    Lemon, S.M.4    Mushahwar, I.K.5
  • 6
    • 0026674719 scopus 로고
    • Secondary structure of the 5′ nontranslated regions of hepatitis C virus and pestivirus genomic RNAs
    • Brown E. A., Zhang H., Ping L.-H., Lemon S. M. Secondary structure of the 5′ nontranslated regions of hepatitis C virus and pestivirus genomic RNAs. Nucleic Acids Res. 20:1992;5041-5045.
    • (1992) Nucleic Acids Res. , vol.20 , pp. 5041-5045
    • Brown, E.A.1    Zhang, H.2    Ping, L.-H.3    Lemon, S.M.4
  • 7
    • 0026502591 scopus 로고
    • Prokaryotic-like cis elements in the cap-independent internal initiation of translation on picornavirus RNA
    • Pilipenko E. V., Gmyl A. P., Maslova S. V., Svitkin Y. V., Sinyakov A. N., Agol V. I. Prokaryotic-like cis elements in the cap-independent internal initiation of translation on picornavirus RNA. Cell. 68:1992;119-131.
    • (1992) Cell , vol.68 , pp. 119-131
    • Pilipenko, E.V.1    Gmyl, A.P.2    Maslova, S.V.3    Svitkin, Y.V.4    Sinyakov, A.N.5    Agol, V.I.6
  • 9
    • 0029962826 scopus 로고    scopus 로고
    • Poliovirus chimeras replicating under the translational control of genetic elements of hepatitis C virus reveal unusual properties of the internal ribosomal entry site of hepatitis C virus
    • Lu H.-H., Wimmer E. Poliovirus chimeras replicating under the translational control of genetic elements of hepatitis C virus reveal unusual properties of the internal ribosomal entry site of hepatitis C virus. Proc. Natl. Acad. Sci. USA. 93:1996;1412-1417.
    • (1996) Proc. Natl. Acad. Sci. USA , vol.93 , pp. 1412-1417
    • Lu, H.-H.1    Wimmer, E.2
  • 10
    • 0030219426 scopus 로고    scopus 로고
    • Structural requirements for initiation of translation by internal ribosomal entry within genome-length hepatitis C virus RNA
    • Honda M., Ping L.-H., Rijnbrand R. C. A., Amphlett E., Clarke B., Rowlands D., Lemon S. M. Structural requirements for initiation of translation by internal ribosomal entry within genome-length hepatitis C virus RNA. Virology. 222:1996;31-42.
    • (1996) Virology , vol.222 , pp. 31-42
    • Honda, M.1    Ping, L.-H.2    Rijnbrand, R.C.A.3    Amphlett, E.4    Clarke, B.5    Rowlands, D.6    Lemon, S.M.7
  • 11
    • 0028235022 scopus 로고
    • Sequences within the poliovirus internal ribosome entry segment control viral RNA synthesis
    • Borman A. M., Deliat F. G., Kean K. M. Sequences within the poliovirus internal ribosome entry segment control viral RNA synthesis. EMBO J. 13:1994;3149-3157.
    • (1994) EMBO J. , vol.13 , pp. 3149-3157
    • Borman, A.M.1    Deliat, F.G.2    Kean, K.M.3
  • 12
    • 23444447590 scopus 로고
    • Polioviruses containing picornavirus type 1 and/or type 2 internal ribosomal entry site elements: Genetic hybrids and the expression of a foreign gene
    • Alexander L., Lu H. H., Wimmer E. Polioviruses containing picornavirus type 1 and/or type 2 internal ribosomal entry site elements: Genetic hybrids and the expression of a foreign gene. Proc. Natl. Acad. Sci. USA. 91:1994;1406-1410.
    • (1994) Proc. Natl. Acad. Sci. USA , vol.91 , pp. 1406-1410
    • Alexander, L.1    Lu, H.H.2    Wimmer, E.3
  • 13
    • 0031014022 scopus 로고    scopus 로고
    • Subgenomic replicons of the flavivirus Kunjin: Construction and applications
    • Khromykh A. A., Westaway E. G. Subgenomic replicons of the flavivirus Kunjin: Construction and applications. J. Virol. 71:1997;1497-1505.
    • (1997) J. Virol. , vol.71 , pp. 1497-1505
    • Khromykh, A.A.1    Westaway, E.G.2
  • 14
    • 0026728652 scopus 로고
    • Sequence analysis of the 5′ noncoding region of hepatitis C virus
    • Bukh J., Purcell R. H., Miller R. H. Sequence analysis of the 5′ noncoding region of hepatitis C virus. Proc. Natl. Acad. Sci. USA. 89:1992;4942-4946.
    • (1992) Proc. Natl. Acad. Sci. USA , vol.89 , pp. 4942-4946
    • Bukh, J.1    Purcell, R.H.2    Miller, R.H.3
  • 15
    • 0025249362 scopus 로고
    • Hepatitis C virus shares amino acid sequence similarity with pestiviruses and flaviviruses as well as members of two plant virus supergroups
    • Miller R. H., Purcell R. H. Hepatitis C virus shares amino acid sequence similarity with pestiviruses and flaviviruses as well as members of two plant virus supergroups. Proc. Natl. Acad. Sci. USA. 87:1990;2057-2061.
    • (1990) Proc. Natl. Acad. Sci. USA , vol.87 , pp. 2057-2061
    • Miller, R.H.1    Purcell, R.H.2
  • 17
    • 0029949695 scopus 로고    scopus 로고
    • Stability of a stem-loop involving the initiator AUG controls the efficiency of internal initiation of translation on hepatitis C virus RNA
    • Honda M., Brown E. A., Lemon S. M. Stability of a stem-loop involving the initiator AUG controls the efficiency of internal initiation of translation on hepatitis C virus RNA. RNA. 2:1996;955-968.
    • (1996) RNA , vol.2 , pp. 955-968
    • Honda, M.1    Brown, E.A.2    Lemon, S.M.3
  • 18
    • 0031032603 scopus 로고    scopus 로고
    • Combinatorial screening and rational optimization for hybridization to folded hepatitis C virus RNA of oligonucleotides with biological antisense activity
    • Lima W. F., Brown-Driver V., Fox M., Hanecak R., Bruice T. W. Combinatorial screening and rational optimization for hybridization to folded hepatitis C virus RNA of oligonucleotides with biological antisense activity. J. Biol. Chem. 272:1997;626-638.
    • (1997) J. Biol. Chem. , vol.272 , pp. 626-638
    • Lima, W.F.1    Brown-Driver, V.2    Fox, M.3    Hanecak, R.4    Bruice, T.W.5
  • 19
    • 0028151477 scopus 로고
    • A conserved helical element is essential for internal initiation of translation of hepatitis C virus RNA
    • Wang C., Sarnow P., Siddiqui A. A conserved helical element is essential for internal initiation of translation of hepatitis C virus RNA. J. Virol. 68:1994;7301-7307.
    • (1994) J. Virol. , vol.68 , pp. 7301-7307
    • Wang, C.1    Sarnow, P.2    Siddiqui, A.3
  • 20
  • 21
    • 0029331431 scopus 로고
    • An RNA pseudoknot is an essential structural element of the internal ribosome entry site located within the hepatitis C virus 5′ noncoding region
    • Wang C., Le S., Ali N., Siddiqui A. An RNA pseudoknot is an essential structural element of the internal ribosome entry site located within the hepatitis C virus 5′ noncoding region. RNA. 1995;526-537.
    • (1995) RNA , pp. 526-537
    • Wang, C.1    Le, S.2    Ali, N.3    Siddiqui, A.4
  • 22
    • 0029902840 scopus 로고    scopus 로고
    • Internal initiation of translation of hepatitis C virus RNA: The ribosome entry site is at the authentic initiation codon
    • Reynolds J. E., Kaminski A., Carroll A. R., Clarke B. E., Rowlands D. J., Jackson R. J. Internal initiation of translation of hepatitis C virus RNA: The ribosome entry site is at the authentic initiation codon. RNA. 2:1996;867-878.
    • (1996) RNA , vol.2 , pp. 867-878
    • Reynolds, J.E.1    Kaminski, A.2    Carroll, A.R.3    Clarke, B.E.4    Rowlands, D.J.5    Jackson, R.J.6
  • 23
    • 0029027606 scopus 로고
    • Variation of the hepatitis C virus 5′ non-coding region: Implications for secondary structure, virus detection and typing
    • Smith D. B., Mellor J., Jarvis L. M., Davidson F., Kolberg J., Urdea M., Yap P.-L., Simmonds P. Variation of the hepatitis C virus 5′ non-coding region: Implications for secondary structure, virus detection and typing. J. Gen. Virol. 76:1995;1749-1761.
    • (1995) J. Gen. Virol. , vol.76 , pp. 1749-1761
    • Smith, D.B.1    Mellor, J.2    Jarvis, L.M.3    Davidson, F.4    Kolberg, J.5    Urdea, M.6    Yap, P.-L.7    Simmonds, P.8
  • 26
    • 0031060497 scopus 로고    scopus 로고
    • Internal entry of ribosomes is directed by the 5′ noncoding region of classical swine fever virus and is dependent on the presence of RNA pseudoknot upstream of the initiation codon
    • Rijnbrand R., van der Stratten T., Van Rijn P. A., Spaan W. J. M., Bredenbeek P. J. Internal entry of ribosomes is directed by the 5′ noncoding region of classical swine fever virus and is dependent on the presence of RNA pseudoknot upstream of the initiation codon. J. Virol. 71:1997;451-457.
    • (1997) J. Virol. , vol.71 , pp. 451-457
    • Rijnbrand, R.1    Van Der Stratten, T.2    Van Rijn, P.A.3    Spaan, W.J.M.4    Bredenbeek, P.J.5
  • 27
    • 0028931934 scopus 로고
    • Unusual folding regions and ribosome landing pad within hepatitis C virus and pestivirus RNAs
    • Le S.-Y., Sonenberg N., Maizel J. V. Jr. Unusual folding regions and ribosome landing pad within hepatitis C virus and pestivirus RNAs. Gene. 154:1995;137-143.
    • (1995) Gene , vol.154 , pp. 137-143
    • Le, S.-Y.1    Sonenberg, N.2    Maizel J.V., Jr.3
  • 29
    • 0029740941 scopus 로고    scopus 로고
    • A common structural core in the internal ribosome entry sites of picornavirus, hepatitis C virus, and pestivirus
    • Le S. Y., Siddiqui A., Maizel J. V. Jr. A common structural core in the internal ribosome entry sites of picornavirus, hepatitis C virus, and pestivirus. Virus Genes. 12:1996;135-147.
    • (1996) Virus Genes , vol.12 , pp. 135-147
    • Le, S.Y.1    Siddiqui, A.2    Maizel J.V., Jr.3
  • 31
    • 0031033797 scopus 로고    scopus 로고
    • The sequence element of the internal ribosome entry site and a 25-kilodalton cellular protein contribute to efficient internal initiation of translation of hepatitis C virus RNA
    • Fukushi S., Kurihara C., Ishiyama N., Hoshino F. B., Oya A., Katayama K. The sequence element of the internal ribosome entry site and a 25-kilodalton cellular protein contribute to efficient internal initiation of translation of hepatitis C virus RNA. J. Virol. 71:1997;1662-1666.
    • (1997) J. Virol. , vol.71 , pp. 1662-1666
    • Fukushi, S.1    Kurihara, C.2    Ishiyama, N.3    Hoshino, F.B.4    Oya, A.5    Katayama, K.6
  • 32
    • 0030560807 scopus 로고    scopus 로고
    • The influence of AUG codons in the hepatitis C virus 5′ nontranslated region on translation and mapping of the translation initiation window
    • Rijnbrand R. C. A., Abbink T. E. M., Haasnoot P. C. J., Spaan W. J. M., Bredenbeek P. J. The influence of AUG codons in the hepatitis C virus 5′ nontranslated region on translation and mapping of the translation initiation window. Virology. 226:1996;47-56.
    • (1996) Virology , vol.226 , pp. 47-56
    • Rijnbrand, R.C.A.1    Abbink, T.E.M.2    Haasnoot, P.C.J.3    Spaan, W.J.M.4    Bredenbeek, P.J.5
  • 33
    • 0024414469 scopus 로고
    • Circumstances and mechanisms of inhibition of translation by secondary structure in eucaryotic mRNAs
    • Kozak M. Circumstances and mechanisms of inhibition of translation by secondary structure in eucaryotic mRNAs. Mol. Cell. Biol. 9:1989;5134-5142.
    • (1989) Mol. Cell. Biol. , vol.9 , pp. 5134-5142
    • Kozak, M.1
  • 35
    • 0017661527 scopus 로고
    • Nucleotide sequences of 5′-terminal ribosome-protected initiation regions from two reovirus messages
    • Kozak M. Nucleotide sequences of 5′-terminal ribosome-protected initiation regions from two reovirus messages. Nature. 269:1977;390-394.
    • (1977) Nature , vol.269 , pp. 390-394
    • Kozak, M.1
  • 36
    • 0020486135 scopus 로고
    • A role for mRNA secondary structure in the control of translation initiation
    • Hall M. N., Gabay J., Débarbouillé M., Schwartz M. A role for mRNA secondary structure in the control of translation initiation. Nature. 295:1982;616-618.
    • (1982) Nature , vol.295 , pp. 616-618
    • Hall, M.N.1    Gabay, J.2    Débarbouillé, M.3    Schwartz, M.4
  • 37
    • 0024576030 scopus 로고
    • Specific RNA binding by Qβ coat protein
    • Witherell G. W., Uhlenbeck O. C. Specific RNA binding by Qβ coat protein. Am. Chem. Soc. 28:1989;71-76.
    • (1989) Am. Chem. Soc. , vol.28 , pp. 71-76
    • Witherell, G.W.1    Uhlenbeck, O.C.2
  • 39
    • 0030846785 scopus 로고    scopus 로고
    • Characteristics of nucleotide substitutions in the hepatitis C virus genome: Constraints on sequence change in coding regions at both ends of the genome
    • Smith D. B., Simmonds P. Characteristics of nucleotide substitutions in the hepatitis C virus genome: Constraints on sequence change in coding regions at both ends of the genome. J. Mol. Evol. 1997.
    • (1997) J. Mol. Evol.
    • Smith, D.B.1    Simmonds, P.2
  • 40
    • 0029130733 scopus 로고
    • Picornavirus internal ribosome entry segments: Comparison of translation efficiency and the requirements for optimal internal initiation of translation in vitro
    • Borman A. M., Bailly J. L., Girard M., Kean K. M. Picornavirus internal ribosome entry segments: comparison of translation efficiency and the requirements for optimal internal initiation of translation in vitro. Nucleic Acids Res. 23:1995;3656-3663.
    • (1995) Nucleic Acids Res. , vol.23 , pp. 3656-3663
    • Borman, A.M.1    Bailly, J.L.2    Girard, M.3    Kean, K.M.4
  • 41
    • 0028364202 scopus 로고
    • Low efficiency of the 5′ nontranslated region of hepatitis A virus RNA in directing cap-independent translation in permissive monkey kidney cells
    • Whetter L. E., Day S. P., Elroy-Stein O., Brown E. A., Lemon S. M. Low efficiency of the 5′ nontranslated region of hepatitis A virus RNA in directing cap-independent translation in permissive monkey kidney cells. J. Virol. 68:1994;5253-5263.
    • (1994) J. Virol. , vol.68 , pp. 5253-5263
    • Whetter, L.E.1    Day, S.P.2    Elroy-Stein, O.3    Brown, E.A.4    Lemon, S.M.5
  • 42
    • 0024694124 scopus 로고
    • A cellular protein that binds to the 5′-noncoding region of poliovirus RNA: Implications for internal translation initiation
    • Meerovitch K., Pelletier J., Sonenberg N. A cellular protein that binds to the 5′-noncoding region of poliovirus RNA: implications for internal translation initiation. Genes Dev. 3:1989;1026-1034.
    • (1989) Genes Dev. , vol.3 , pp. 1026-1034
    • Meerovitch, K.1    Pelletier, J.2    Sonenberg, N.3
  • 44
    • 0031003235 scopus 로고    scopus 로고
    • The La antigen binds 5′ noncoding region of the hepatitis C virus RNA in the context of the initiator AUG codon and stimulates internal ribosome entry site-mediated translation
    • Ali N., Siddiqui A. The La antigen binds 5′ noncoding region of the hepatitis C virus RNA in the context of the initiator AUG codon and stimulates internal ribosome entry site-mediated translation. Proc. Natl. Acad. Sci. USA. 94:1997;2249-2254.
    • (1997) Proc. Natl. Acad. Sci. USA , vol.94 , pp. 2249-2254
    • Ali, N.1    Siddiqui, A.2
  • 45
    • 0025023486 scopus 로고
    • Characterization of the autoantigen La as a nucleic acid-dependent ATPase/dATPase with melting properties
    • Bachmann M., Pfeifer K., Schröder H. C., Müller W. E. G. Characterization of the autoantigen La as a nucleic acid-dependent ATPase/dATPase with melting properties. Cell. 60:1990;85-93.
    • (1990) Cell , vol.60 , pp. 85-93
    • Bachmann, M.1    Pfeifer, K.2    Schröder, H.C.3    Müller, W.E.G.4
  • 46
    • 0028217897 scopus 로고
    • The La antigen inhibits the activation of the interferon-inducible protein kinase PKR by sequestering and unwinding double-stranded RNA
    • Xiao Q., Sharp T. V., Jeffrey I. W., James M. C., Pruijn G. J., van Venrooij W. J., Clemens M. J. The La antigen inhibits the activation of the interferon-inducible protein kinase PKR by sequestering and unwinding double-stranded RNA. Nucleic Acids Res. 22:1994;2512-2518.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 2512-2518
    • Xiao, Q.1    Sharp, T.V.2    Jeffrey, I.W.3    James, M.C.4    Pruijn, G.J.5    Van Venrooij, W.J.6    Clemens, M.J.7
  • 47
    • 0027172207 scopus 로고
    • A cytoplasmic 57-kDa protein that is required for translation of picornavirus RNA by internal ribosomal entry is identical to the nuclear pyrimidine tract-binding protein
    • Hellen C. U. T., Witherell G. W., Schmid M., Shin S. H., Pestova T. V., Gil A., Wimmer E. A cytoplasmic 57-kDa protein that is required for translation of picornavirus RNA by internal ribosomal entry is identical to the nuclear pyrimidine tract-binding protein. Proc. Natl. Acad. Sci. USA. 90:1993;7642-7646.
    • (1993) Proc. Natl. Acad. Sci. USA , vol.90 , pp. 7642-7646
    • Hellen, C.U.T.1    Witherell, G.W.2    Schmid, M.3    Shin, S.H.4    Pestova, T.V.5    Gil, A.6    Wimmer, E.7
  • 48
    • 0029941298 scopus 로고    scopus 로고
    • Porcine polypyrimidine tract-binding protein stimulates translation initiation at the internal ribosome entry site of foot-and-mouth-disease virus
    • Niepmann M. Porcine polypyrimidine tract-binding protein stimulates translation initiation at the internal ribosome entry site of foot-and-mouth-disease virus. FEBS Lett. 388:1996;39-42.
    • (1996) FEBS Lett. , vol.388 , pp. 39-42
    • Niepmann, M.1
  • 49
    • 0029397360 scopus 로고
    • Direct evidence that polypyrimidine tract binding protein (PTB) is essential for internal initiation of translation of encephalomyocarditis virus RNA
    • Kaminski A., Hunt S. L., Patton J. G., Jackson R. J. Direct evidence that polypyrimidine tract binding protein (PTB) is essential for internal initiation of translation of encephalomyocarditis virus RNA. RNA. 1:1995;924-938.
    • (1995) RNA , vol.1 , pp. 924-938
    • Kaminski, A.1    Hunt, S.L.2    Patton, J.G.3    Jackson, R.J.4
  • 50
    • 0029166747 scopus 로고
    • Interaction of polypyrimidine tract-binding protein with the 5′ noncoding region of the hepatitis C virus RNA genome and its functional requirement in internal initiation of translation
    • Ali N., Siddiqui A. Interaction of polypyrimidine tract-binding protein with the 5′ noncoding region of the hepatitis C virus RNA genome and its functional requirement in internal initiation of translation. J. Virol. 69:1995;6367-6375.
    • (1995) J. Virol. , vol.69 , pp. 6367-6375
    • Ali, N.1    Siddiqui, A.2
  • 52
    • 0029927267 scopus 로고    scopus 로고
    • Specific interaction of glyceraldehyde 3-phosphate dehydrogenase with the 5′ nontranslated RNA of hepatitis A virus
    • Schultz D. E., Hardin C. C., Lemon S. M. Specific interaction of glyceraldehyde 3-phosphate dehydrogenase with the 5′ nontranslated RNA of hepatitis A virus. J. Biol. Chem. 271:1996;14134-14142.
    • (1996) J. Biol. Chem. , vol.271 , pp. 14134-14142
    • Schultz, D.E.1    Hardin, C.C.2    Lemon, S.M.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.