-
1
-
-
0029039263
-
Improved dating of the human/chimpanzee separation in the mitochondrial DNA tree: Heterogeneity among amino acid sites
-
ADACHI, J., and M. HASEGAWA. 1995. Improved dating of the human/chimpanzee separation in the mitochondrial DNA tree: heterogeneity among amino acid sites. J. Mol. Evol. 40:622-628.
-
(1995)
J. Mol. Evol.
, vol.40
, pp. 622-628
-
-
Adachi, J.1
Hasegawa, M.2
-
2
-
-
0023359361
-
Asynchronous distance between homologous DNA sequences
-
BARRY, D., and J. A. HARTIGAN. 1987. Asynchronous distance between homologous DNA sequences. Biometrics 43:261-276.
-
(1987)
Biometrics
, vol.43
, pp. 261-276
-
-
Barry, D.1
Hartigan, J.A.2
-
3
-
-
0020328686
-
Mitochondrial DNA sequences of primates, tempo and mode of evolution
-
BROWN, W. M., E. M. PRAGER, A. WANG, and A. C. WILSON. 1982. Mitochondrial DNA sequences of primates, tempo and mode of evolution. J. Mol. Evol. 18:225-239.
-
(1982)
J. Mol. Evol.
, vol.18
, pp. 225-239
-
-
Brown, W.M.1
Prager, E.M.2
Wang, A.3
Wilson, A.C.4
-
4
-
-
12044252488
-
Compositional bias, character-state bias, and character-state reconstruction using parsimony
-
COLLINS, T. M., P. H. WIMBERGER, and G. J. P. NAYLOR. 1994. Compositional bias, character-state bias, and character-state reconstruction using parsimony. Syst. Biol. 43:482-496.
-
(1994)
Syst. Biol.
, vol.43
, pp. 482-496
-
-
Collins, T.M.1
Wimberger, P.H.2
Naylor, G.J.P.3
-
5
-
-
0000228203
-
A model of evolutionary change in proteins
-
National Biomedical Research Foundation, Washington, D. C.
-
DAYHOFF, M. O., R. M. SCHWARTZ, and B. C. ORCUTT. 1978. A model of evolutionary change in proteins. Pp. 345-352 in Atlas of protein sequence and structure, Vol 5, Suppl. 3. National Biomedical Research Foundation, Washington, D. C.
-
(1978)
Atlas of Protein Sequence and Structure
, vol.5
, Issue.3 SUPPL.
, pp. 345-352
-
-
Dayhoff, M.O.1
Schwartz, R.M.2
Orcutt, B.C.3
-
6
-
-
0027168787
-
Mitochondrial cytochrome b: Evolution and structure of the protein
-
ESPOSTI, M. D., S. DE VRIES, M. CRIMI, A. GHELLI, T. PATARNELLO, and A. MEYER. 1993. Mitochondrial cytochrome b: evolution and structure of the protein. Biochimica et Biophysica Acta 1143:243-271.
-
(1993)
Biochimica et Biophysica Acta
, vol.1143
, pp. 243-271
-
-
Esposti, M.D.1
De Vries, S.2
Crimi, M.3
Ghelli, A.4
Patarnello, T.5
Meyer, A.6
-
7
-
-
0019797407
-
Evolutionary trees from DNA sequences: A maximum likelihood approach
-
FELSENSTEIN, J. 1981. Evolutionary trees from DNA sequences: a maximum likelihood approach. J. Mol. Evol. 17:368-376.
-
(1981)
J. Mol. Evol.
, vol.17
, pp. 368-376
-
-
Felsenstein, J.1
-
8
-
-
84959747425
-
Toward defining the course of evolution: Minimum change for a specific tree topology
-
FITCH, W. M. 1971. Toward defining the course of evolution: minimum change for a specific tree topology. Syst. Zool. 20:406-416.
-
(1971)
Syst. Zool.
, vol.20
, pp. 406-416
-
-
Fitch, W.M.1
-
9
-
-
0008114066
-
Rates of molecular evolution
-
GILLESPIE, J. H. 1986. Rates of molecular evolution. Ann. Rev. Ecol. Syst. 17:637-665.
-
(1986)
Ann. Rev. Ecol. Syst.
, vol.17
, pp. 637-665
-
-
Gillespie, J.H.1
-
10
-
-
0023504646
-
Molecular evolutionary rates of oncogenes
-
GOJOBORI, T., and S. YOKOYAMA. 1987. Molecular evolutionary rates of oncogenes. J. Mol. Evol. 26:148-156.
-
(1987)
J. Mol. Evol.
, vol.26
, pp. 148-156
-
-
Gojobori, T.1
Yokoyama, S.2
-
11
-
-
0020317308
-
Patterns of nucleotide substitution in pseudogenes and functional genes
-
GOJOBORI, T., W.-H. LI, and D. GRAUR. 1982. Patterns of nucleotide substitution in pseudogenes and functional genes. J. Mol. Evol. 18:360-369.
-
(1982)
J. Mol. Evol.
, vol.18
, pp. 360-369
-
-
Gojobori, T.1
Li, W.-H.2
Graur, D.3
-
12
-
-
0021003230
-
Estimates of DNA and protein sequence divergence: An examination of some assumptions
-
GOLDING, G. B. 1983. Estimates of DNA and protein sequence divergence: an examination of some assumptions. Mol. Biol. Evol. 1:125-142.
-
(1983)
Mol. Biol. Evol.
, vol.1
, pp. 125-142
-
-
Golding, G.B.1
-
13
-
-
0002329356
-
Minimum evolution fits to a given tree
-
HARTIGAN, J. A. 1973. Minimum evolution fits to a given tree. Biometrics 29:53-65.
-
(1973)
Biometrics
, vol.29
, pp. 53-65
-
-
Hartigan, J.A.1
-
14
-
-
0026521195
-
Human origins and analysis of mitochondrial DNA sequences
-
HEDGES, A. B., S. KUMAR, K. TAMURA, and M. STONEKING. 1992. Human origins and analysis of mitochondrial DNA sequences. Science 255:737-739.
-
(1992)
Science
, vol.255
, pp. 737-739
-
-
Hedges, A.B.1
Kumar, S.2
Tamura, K.3
Stoneking, M.4
-
15
-
-
0021017159
-
The spatial distribution of fixed mutations within genes coding for proteins
-
HOLMQUIST, R., M. GOODMAN, T. CONRY, and J. CZELUSNIAK. 1983. The spatial distribution of fixed mutations within genes coding for proteins. J. Mol. Evol. 19:437-448.
-
(1983)
J. Mol. Evol.
, vol.19
, pp. 437-448
-
-
Holmquist, R.1
Goodman, M.2
Conry, T.3
Czelusniak, J.4
-
16
-
-
0026699256
-
Patterns of nucleotide substitutions inferred from the phylogenies of the class I major histocompatibility complex genes
-
IMANISHI, T., and T. GOJOBORI. 1992. Patterns of nucleotide substitutions inferred from the phylogenies of the class I major histocompatibility complex genes. J. Mol. Evol. 35:196-204.
-
(1992)
J. Mol. Evol.
, vol.35
, pp. 196-204
-
-
Imanishi, T.1
Gojobori, T.2
-
17
-
-
0025061094
-
Limitations of the evolutionary parsimony method of phylogenetic analysis
-
JIN, L., and M. NEI. 1990. Limitations of the evolutionary parsimony method of phylogenetic analysis. Mol. Biol. Evol. 7:82-102.
-
(1990)
Mol. Biol. Evol.
, vol.7
, pp. 82-102
-
-
Jin, L.1
Nei, M.2
-
19
-
-
0026691182
-
The rapid generation of mutation data matrices from protein sequences
-
JONES, D. T., W. R. TAYLOR, and J. M. THORNTON. 1992. The rapid generation of mutation data matrices from protein sequences. Comp. Appl. Biosci. 8:275-282.
-
(1992)
Comp. Appl. Biosci.
, vol.8
, pp. 275-282
-
-
Jones, D.T.1
Taylor, W.R.2
Thornton, J.M.3
-
20
-
-
0000732090
-
Evolution of protein molecules
-
H. N. MUNRO, ed. Academic Press, New York
-
JUKES, T. H., and C. R. CANTOR. 1969. Evolution of protein molecules. Pp. 21-123 in H. N. MUNRO, ed. Mammalian protein metabolism. Academic Press, New York.
-
(1969)
Mammalian Protein Metabolism
, pp. 21-123
-
-
Jukes, T.H.1
Cantor, C.R.2
-
21
-
-
0019296687
-
A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
-
KIMURA, M. 1980. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16:111-120.
-
(1980)
J. Mol. Evol.
, vol.16
, pp. 111-120
-
-
Kimura, M.1
-
22
-
-
0002538268
-
Sequence evolution of mitochondrial DNA in humans and chimpanzees: Control region and protein-coding region
-
S. OSAWA and T. HONJO, eds. Springer-Verlag, Tokyo
-
KOCHER, T. D., and A. C. WILSON. 1991. Sequence evolution of mitochondrial DNA in humans and chimpanzees: control region and protein-coding region. Pp. 391-413 in S. OSAWA and T. HONJO, eds. Evolution of life: fossils, molecules and culture. Springer-Verlag, Tokyo.
-
(1991)
Evolution of Life: Fossils, Molecules and Culture
, pp. 391-413
-
-
Kocher, T.D.1
Wilson, A.C.2
-
23
-
-
0028177080
-
A simulation of phylogeny algorithms under equal and unequal evolutionary rates
-
KUHNER, M. K., and J. FELSENSTEIN. 1994. A simulation of phylogeny algorithms under equal and unequal evolutionary rates. Mol. Biol. Evol. 11:459-468.
-
(1994)
Mol. Biol. Evol.
, vol.11
, pp. 459-468
-
-
Kuhner, M.K.1
Felsenstein, J.2
-
24
-
-
0003496662
-
-
The Pennsylvania State University, University Park, Pa. 16802
-
KUMAR, S., K. TAMURA, and M. NEI. 1993. MEGA: molecular evolutionary genetics analysis, version 1.0. The Pennsylvania State University, University Park, Pa. 16802.
-
(1993)
MEGA: Molecular Evolutionary Genetics Analysis, Version 1.0
-
-
Kumar, S.1
Tamura, K.2
Nei, M.3
-
25
-
-
0028181246
-
Reconstructing evolutionary trees from DNA and protein sequences: Paralinear distances
-
LAKE, J. A. 1994. Reconstructing evolutionary trees from DNA and protein sequences: paralinear distances. Proc. Natl. Acad. Sci. USA 91:1455-1459.
-
(1994)
Proc. Natl. Acad. Sci. USA
, vol.91
, pp. 1455-1459
-
-
Lake, J.A.1
-
26
-
-
0024637684
-
Patterns of ribosomal RNA evolution in salamanders
-
LARSON, A., and A. C. WILSON. 1989. Patterns of ribosomal RNA evolution in salamanders. Mol. Biol. Evol. 6:131-154.
-
(1989)
Mol. Biol. Evol.
, vol.6
, pp. 131-154
-
-
Larson, A.1
Wilson, A.C.2
-
27
-
-
0021710490
-
Nonrandomness of point mutation as reflected in nucleotide substitutions in pseudogenes and its evolutionary implications
-
LI, W.-H., C.-I. WU, and C.-C. LUO. 1984. Nonrandomness of point mutation as reflected in nucleotide substitutions in pseudogenes and its evolutionary implications. J. Mol. Evol. 21:58-71.
-
(1984)
J. Mol. Evol.
, vol.21
, pp. 58-71
-
-
Li, W.-H.1
Wu, C.-I.2
Luo, C.-C.3
-
28
-
-
0025830950
-
Mutation pattern of human immunodeficiency virus genes
-
MORIYAMA, E. N., Y. INA, K. IHEO, N. SHLMIZU, and T. GOJOBORI. 1991. Mutation pattern of human immunodeficiency virus genes. J. Mol. Evol. 32:360-363.
-
(1991)
J. Mol. Evol.
, vol.32
, pp. 360-363
-
-
Moriyama, E.N.1
Ina, Y.2
Iheo, K.3
Shlmizu, N.4
Gojobori, T.5
-
29
-
-
0000360362
-
Unequal base frequencies and the estimation of substitution rates
-
PERNA, N. T, and T. D. KOCHER. 1995. Unequal base frequencies and the estimation of substitution rates. Mol. Biol. Evol. 12:359-361.
-
(1995)
Mol. Biol. Evol.
, vol.12
, pp. 359-361
-
-
Perna, N.T.1
Kocher, T.D.2
-
30
-
-
0025267792
-
The general stochastic model of nucleotide substitutions
-
RODRIGUEZ, F., J. F. OLIVER, A. MARIN, and J. R. MEDINA. 1990. The general stochastic model of nucleotide substitutions. J. Theor. Biol. 142:485-501.
-
(1990)
J. Theor. Biol.
, vol.142
, pp. 485-501
-
-
Rodriguez, F.1
Oliver, J.F.2
Marin, A.3
Medina, J.R.4
-
31
-
-
0028230202
-
Unbiased estimates of the number of nucleotide substitutions when substitution rates varies among different sites
-
RZHETSKY, A., and M. NEI. 1994. Unbiased estimates of the number of nucleotide substitutions when substitution rates varies among different sites. J. Mol. Evol. 38:295-299.
-
(1994)
J. Mol. Evol.
, vol.38
, pp. 295-299
-
-
Rzhetsky, A.1
Nei, M.2
-
32
-
-
43949153645
-
Recovering a tree from the leaf colourations it generates under a Markov model
-
STEEL, M. 1994. Recovering a tree from the leaf colourations it generates under a Markov model. Appl. Math. Lett. 7:19-23.
-
(1994)
Appl. Math. Lett.
, vol.7
, pp. 19-23
-
-
Steel, M.1
-
33
-
-
0028807391
-
Amongsite rate variation and phylogenetic analysis of 12S rRNA in Sigmontine rodents
-
SULLIVAN, J., K. E. HOLSINGER, and C. SIMON. 1995. Amongsite rate variation and phylogenetic analysis of 12S rRNA in Sigmontine rodents. Mol. Biol. Evol. 12:988-1001.
-
(1995)
Mol. Biol. Evol.
, vol.12
, pp. 988-1001
-
-
Sullivan, J.1
Holsinger, K.E.2
Simon, C.3
-
34
-
-
0026023573
-
Overdispersed molecular clock at the major histocompatibility complex loci
-
TAKAHATA, N. 1991. Overdispersed molecular clock at the major histocompatibility complex loci. Proc. R. Soc. Lond. B 243:13-18.
-
(1991)
Proc. R. Soc. Lond. B
, vol.243
, pp. 13-18
-
-
Takahata, N.1
-
35
-
-
0027215171
-
Unbiased estimation of evolutionary distance between nucleotide sequences
-
TAJIMA, T. 1993. Unbiased estimation of evolutionary distance between nucleotide sequences. Mol. Biol. Evol. 10:677-688.
-
(1993)
Mol. Biol. Evol.
, vol.10
, pp. 677-688
-
-
Tajima, T.1
-
36
-
-
0027157960
-
Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees
-
TAMURA, K., and M. NEI. 1993. Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol. Biol. Evol. 10:512-526.
-
(1993)
Mol. Biol. Evol.
, vol.10
, pp. 512-526
-
-
Tamura, K.1
Nei, M.2
-
37
-
-
0028205953
-
Relative efficiencies of the maximum-likelihood, neighbor-joining, and maximum-parsimony methods when substitution rate varies with site
-
TATENO, Y., N. TAKEZAKI, and M. NEI. 1994. Relative efficiencies of the maximum-likelihood, neighbor-joining, and maximum-parsimony methods when substitution rate varies with site. Mol. Biol. Evol. 11:261-277.
-
(1994)
Mol. Biol. Evol.
, vol.11
, pp. 261-277
-
-
Tateno, Y.1
Takezaki, N.2
Nei, M.3
-
38
-
-
0002671410
-
Some probabilistic and statistical problems on the analysis of DNA sequences
-
American Mathematical Society, Providence, R.I.
-
TAVARÉ, S. 1986. Some probabilistic and statistical problems on the analysis of DNA sequences. Pp. 57-86 in Lectures in mathematics in the life sciences, Vol. 17. American Mathematical Society, Providence, R.I.
-
(1986)
Lectures in Mathematics in the Life Sciences
, vol.17
, pp. 57-86
-
-
Tavaré, S.1
-
39
-
-
0015219691
-
Fitting discrete probability distributions to evolutionary events
-
UZZELL, T., and K. W. CORBIN. 1971. Fitting discrete probability distributions to evolutionary events. Science 172: 1089-1096.
-
(1971)
Science
, vol.172
, pp. 1089-1096
-
-
Uzzell, T.1
Corbin, K.W.2
-
40
-
-
0026046333
-
African populations and the evolution of human mitochondrial DNA
-
VIGILANT, L., M. STONEKING, H. HARPENDING, K. HAWKES, and A. C. WILSON. 1991. African populations and the evolution of human mitochondrial DNA. Science 253:1503-1507.
-
(1991)
Science
, vol.253
, pp. 1503-1507
-
-
Vigilant, L.1
Stoneking, M.2
Harpending, H.3
Hawkes, K.4
Wilson, A.C.5
-
41
-
-
0027241482
-
Monophyletic origins of the metazoa: An evolutionary link with fungi
-
WAINRIGHT, P. O., G. HINKLE, M. L. SOGIN, and S. K. STICKEL. 1993. Monophyletic origins of the metazoa: an evolutionary link with fungi. Science 260:340-342.
-
(1993)
Science
, vol.260
, pp. 340-342
-
-
Wainright, P.O.1
Hinkle, G.2
Sogin, M.L.3
Stickel, S.K.4
-
42
-
-
0027496790
-
Substitution rate variation among sites in hypervariable region 1 of human mitochondrial DNA
-
WAKELEY, J. 1993. Substitution rate variation among sites in hypervariable region 1 of human mitochondrial DNA. J. Mol. Evol. 37:613-623.
-
(1993)
J. Mol. Evol.
, vol.37
, pp. 613-623
-
-
Wakeley, J.1
-
43
-
-
0028297534
-
Substitution rate variation among sites and the estimation of transition bias
-
_. 1994. Substitution rate variation among sites and the estimation of transition bias. Mol. Biol. Evol. 11:436-442.
-
(1994)
Mol. Biol. Evol.
, vol.11
, pp. 436-442
-
-
-
44
-
-
0027132974
-
Maximum-likelihood estimation of phylogeny from DNA sequences when substitution rates differ over sites
-
YANG, Z. 1993. Maximum-likelihood estimation of phylogeny from DNA sequences when substitution rates differ over sites. Mol. Biol. Evol. 10:1396-1401.
-
(1993)
Mol. Biol. Evol.
, vol.10
, pp. 1396-1401
-
-
Yang, Z.1
-
45
-
-
0028214103
-
Estimating the pattern of nucleotide substitution
-
_. 1994a. Estimating the pattern of nucleotide substitution. J. Mol. Evol. 39:105-111.
-
(1994)
J. Mol. Evol.
, vol.39
, pp. 105-111
-
-
-
46
-
-
0028064845
-
Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: Approximate methods
-
_. 1994b. Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods. J. Mol. Evol. 39:306-314.
-
(1994)
J. Mol. Evol.
, vol.39
, pp. 306-314
-
-
-
47
-
-
0028813337
-
A space-time process model for the evolution of DNA sequences
-
_. 1995a. A space-time process model for the evolution of DNA sequences. Genetics 139:993-1005.
-
(1995)
Genetics
, vol.139
, pp. 993-1005
-
-
-
48
-
-
67749105300
-
On the general reversible Markov-process model of nucleotide substitution: A reply to Saccone et al
-
_. 1995b. On the general reversible Markov-process model of nucleotide substitution: a reply to Saccone et al. J. Mol. Evol. 41:254-255.
-
(1995)
J. Mol. Evol.
, vol.41
, pp. 254-255
-
-
-
49
-
-
0029120814
-
Mixed model analysis of DNA sequence evolution
-
YANG, Z., and T. WANG. 1995. Mixed model analysis of DNA sequence evolution. Biometrics 51:552-561.
-
(1995)
Biometrics
, vol.51
, pp. 552-561
-
-
Yang, Z.1
Wang, T.2
-
50
-
-
0028267146
-
Comparison of models for nucleotide substitution used in maximum likelihood phylogenetic estimation
-
YANG, Z., N. GOLDMAN, and A. E. FRIDAY. 1994. Comparison of models for nucleotide substitution used in maximum likelihood phylogenetic estimation. Mol. Biol. Evol. 11:316-324.
-
(1994)
Mol. Biol. Evol.
, vol.11
, pp. 316-324
-
-
Yang, Z.1
Goldman, N.2
Friday, A.E.3
-
51
-
-
0028108336
-
Estimation of evolutionary distances between nucleotide sequences
-
ZHARKIKH, A. 1994. Estimation of evolutionary distances between nucleotide sequences. J. Mol. Evol. 39:315-329.
-
(1994)
J. Mol. Evol.
, vol.39
, pp. 315-329
-
-
Zharkikh, A.1
|