Recent advances in the design and construction of synthetic peptides: For the love of basics or just for the technology of it

Trends in Biotechnology

Volumn 18, Issue 5, 2000, Pages 212-217

  Mayo, Kevin H ^a  

^a Molec Biol   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ANTIINFECTIVE AGENT; BIOMATERIAL; SYNTHETIC PEPTIDE;

AMINO ACID SEQUENCE; BIOTECHNOLOGY; DRUG DESIGN; ENZYME ACTIVITY; NUCLEAR MAGNETIC RESONANCE; PEPTIDE SYNTHESIS; PRIORITY JOURNAL; PROTEIN CONFORMATION; PROTEIN STRUCTURE; REVIEW; X RAY CRYSTALLOGRAPHY;

AMINO ACID MOTIFS; AMINO ACID SEQUENCE; BIOCHEMISTRY; BIOCOMPATIBLE MATERIALS; BIOTECHNOLOGY; ENZYMES; MOLECULAR MIMICRY; MOLECULAR SEQUENCE DATA; PEPTIDES; PEPTIDES, CYCLIC; PROTEIN FOLDING;

EID: 0034193592     PISSN: 01677799     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0167-7799(00)01439-6     Document Type: Review

References (40)

1. Fields, G.B., eds (1997) Methods in Enzymology (Vol. 289), Academic Press.
2. Hendrickson W.A., Wuthrich K. Macromolecular Structures. 1992;Academic Press.
3. Muir, T.W. et al. (1997) Protein synthesis by chemical ligation of unprotected peptides in aqueous solution. In Methods in Enzymology (Vol. 289) (Fields, G.B., ed.), pp. 266-298, Academic Press.
4. Kochendoerfer G.G.et al. Total chemical synthesis of the integral membrane protein influenza A virus M2. role of its C-terminal domain in tetramer assembly Biochemistry. 38:1999;11905-11913.
5. Hackeng T.W.et al. Chemical synthesis of human protein S thrombin-sensitive module and first epidermal growth factor module. Biopolymers. 46:1998;53-63.
6. Sydor J.R.et al. Design, total chemical synthesis and binding properties of a (Leu-91-N1-methyl-7-azaTrp)Ras-binding domain of c-Raf-1. Proc. Natl. Acad. Sci. U. S. A. 96:1999;7865-7870.
7. Mayo, K.H. (1997) Solution nuclear magnetic resonance characterization of peptide folding. In Methods in Enzymology (Vol. 289) (Fields, G.B., ed.), pp. 646-672, Academic Press.
8. DeGrado W.F.et al. De novo design and structural characterization of proteins and metalloproteins. Annu. Rev. Biochem. 68:1999;779-819.
9. Annis, I. et al. (1997) Disulfide bond formation in peptides. In Methods in Enzymology (Vol. 289) (Fields, G.B., ed.), pp. 198-221, Academic Press.
10. Tam J.P., Lu Y.A. A biomimetic strategy in the synthesis and fragmentation of cyclic protein. Protein Sci. 7:1998;1583-1592.
11. Struthers M.D.et al. Design of a monomeric 23-residue polypeptide with defined tertiary structure. Science. 271:1996;342-345.
12. Dahiyat B.I., Mayo S.L. De novo protein design: fully automated sequence selection. Science. 278:1997;82-87.
13. Fezoui Y.et al. Solution structure of alpha-turn-alpha, a helical hairpin peptide of de novo design. Protein Sci. 6:1997;1869-1877.
14. Ogihara N.L.et al. The crystal structure of the designed trimeric coiled coil coil-VaLd. implications for engineering crystals and supramolecular assemblies Protein Sci. 6:1997;80-88.
15. Harbury P.B.et al. A switch between two-, three- and four-stranded coiled coils in GCN4 leucine zipper mutants. Science. 262:1993;1401-1407.
16. Broo K.S.et al. Site-selective control of the reactivity of surface-exposed histidine residues in designed four-helix-bundle catalysts. Fold. Design. 3:1998;303-312.
17. Causton A.S., Sherman J.C. Design of proteins using rigid organic macrocycles as scaffolds. Bioorg. Med. Chem. 7:1999;23-27.
18. Yan Y., Erickson B.W. Engineering of betabellin 14D. disulfide-induced folding of a β-sheet protein Protein Sci. 3:1994;1069-1073.
19. Quinn T.P.et al. Betadoublet: de novo design, synthesis and characterization of a β-sandwich protein. Proc. Natl. Acad. Sci. U. S. A. 91:1994;8747-8751.
20. Mayo K.H.et al. A recipe for designing water-soluble β-sheet-forming peptides. Protein Sci. 5:1996;1301-1315.
21. Ilyina E.et al. NMR structure of a de novo designed, peptide 33mer with two distinct, compact β-sheet folds. Biochemistry. 36:1997;5245-5250.
22. Lacroix E.et al. The design of linear peptides that fold as monomeric β-sheet structures. Curr. Opin. Struct. Biol. 9:1999;487-493.
23. Lesage A. Trimeric assembly and three-dimensional structure model of the FACIT collagen COL1-NC1 junction from CD and NMR analysis. Biochemistry. 35:1996;9647-9660.
24. Baum J., Brodsky B. Real-time NMR investigations of triple-helix folding and collagen folding diseases. Fold. Design. 2:1997;53-60.
25. 1 integrin and mediates tumor cell adhesion, spreading and motility. Biochemistry. 36:1997;15404-15410.
26. Johnsson K., Ge L. Phage display of combinatorial peptide and protein libraries and their applications in biology and chemistry. Curr. Top. Microbiol. Immunol. 243:1999;87-105.
27. Dooley C.T., Houghten R.A. Synthesis and screening of positional scanning combinatorial libraries. Methods Mol. Cell. Biol. 87:1998;13-24.
28. Johnsson K.et al. Synthesis, structure and activity of artificial, rationally designed catalytic polypeptides. Nature. 365:1993;530-532.
29. Perez-Paya E. Functionalized protein-like structures from conformationally defined synthetic combinatorial libraries. J. Biol. Chem. 271:1996;4120-4126.
30. Baltzer L.et al. Designed four-helix bundle catalysts - the engineering of reactive sites for hydrolysis and transesterification reactions of p-nitrophenyl esters. Bioorg. Med. Chem. 7:1999;83-91.
31. Claeson G. Synthetic peptides and peptidomimetics as substrates and inhibitors of thrombin and other proteases in the blood coagulation system. Blood Coagul. Fibrinolysis. 5:1994;411-436.
32. Merrifield R.B.et al. Design and synthesis of antimicrobial peptides. Ciba Found. Symp. 186:1994;5-20.
33. Mayo K.H.et al. Designed β-sheet-forming peptide 33mer with potent human bactericidal/permeability increasing protein-like bactericidal and endotoxin neutralizing activities. Biochim. Biophys. Acta. 1425:1998;81-92.
34. Hubbell J.A. Biomaterials in tissue engineering. Biotechnology. 13:1995;565-576.
35. Kao W.J. Evaluation of protein-modulated macrophage behavior on biomaterials. designing biomimetic materials for cellular engineering Biomaterials. 20:1999;2213-2221.
36. Healy K.E.et al. Designing biomaterials to direct biological responses. Ann. New York Acad. Sci. 875:1999;24-35.
37. Fields G.B.et al. Protein-like molecular architecture. biomaterial applications for inducing cellular receptor binding and signal transduction Biopolymers. 47:1998;143-151.
38. Yu Y.C.et al. Structure and dynamics of peptide-amphiphiles incorporating triple-helical protein-like molecular architecture. Biochemistry. 38:1999;1659-1668.
39. Aggeli A.et al. Responsive gels formed by the spontaneous self-assembly of peptides into polymeric β-sheet tapes. Nature. 386:1997;250-262.
40. Urry D.W.et al. Electrochemical transduction in elastic protein-based polymers. a model for an energy conversion step of oxidative phosphorylation Biochem. Biophys. Res. Commun. 210:1995;1031-1039.