Oligodeoxyribonucleotide length and sequence effects on intramolecular and intermolecular G-quartet formation

Gene

Volumn 197, Issue 1-2, 1997, Pages 253-260

  Cheng, Ann Joy ^a,b   Van Dyke, Michael W ^a  

^a UNIVERSITY OF TEXAS   (United States)

^b CHANG GUNG UNIVERSITY   (Taiwan)

Author keywords

Antigene; Aptamer; Quadruplex; Tetraplex; Triplex DNA

Indexed keywords

DRUG; GUANINE; HEPARIN BINDING PROTEIN; NUCLEIC ACID; OLIGODEOXYRIBONUCLEOTIDE; THYMINE;

ARTICLE; DIMERIZATION; GEL ELECTROPHORESIS; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL;

BASE SEQUENCE; DETERGENTS; DIMERIZATION; DNA; ELECTROPHORESIS, POLYACRYLAMIDE GEL; GUANINE; KINETICS; NUCLEIC ACID CONFORMATION; OLIGODEOXYRIBONUCLEOTIDES; POLYETHYLENE GLYCOLS; THERMODYNAMICS;

EID: 0030804196     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0378-1119(97)00269-2     Document Type: Article

References (22)

1. Belotserkovskii, B.P., Johnston, B.H., 1996. Polypropylene tube surfaces may induce denaturation and multimerization of DNA. Science 271, 222-223.
2. Cheng, A.-J., Van Dyke, M.W., 1993. Monovalent cation effects on intermolecular purine-purine-pyrimidine triple-helix formation. Nucleic Acids Res. 21, 5630-5635.
3. Cheng, A.-J., Van Dyke, M.W., 1994. Oligodeoxyribonucleotide length and sequence effects on intermolecular purine-purine-pyrimidine triple-helix formation. Nucleic Acids Res. 22, 4742-4747.
4. Gee, J.E., Revankar, G.R., Rao, T.S., Hogan, M.E., 1995. Triplex formation at the rat neu gene utilizing imidazole and 2′-deoxy-6-thioguanosine base substitutions. Biochemistry 34, 2042-2048.
5. Gold, L., Polisky, B., Uhlenbeck, O., Yarus, M., 1995. Diversity of oligonucleotide functions. Annu. Rev. Biochem. 64, 763-797.
6. Guschlbauer, W., Chantot, J.-F., Thiele, D., 1990. Four-stranded nucleic acid structures 25 years later: from guanosine gels to telomere DNA. J. Biomol. Struct. Dyn. 8, 491-511.
7. Huizenga, D.E., Szostak, J.W., 1995. A DNA aptamer that binds adenosine and ATP. Biochemistry 34, 656-665.
8. Macaya, R.F., Schultze, P., Smith, F.W., Roe, J.A., Feigon, J., 1994. Three-dimensional solution structure of the thrombin-binding DNA aptamer d(GGTTGGTGTGGTTGG). J. Mol. Biol. 235, 1532-1547.
9. Macaya, R.F., Waldron, J.A., Beutel, B.A., Gao, H., Joesten, M.E., Yang, M., Patel, R., Bertelsen, A.H., Cook, A.F., 1995. Structural and functional characterization of potent antithrombotic oligonucleotides possessing both quadruplex and duplex motifs. Biochemistry 34, 4478-4492.
10. Maher, L.J., 1992. DNA triple-helix formation: an approach to artificial gene repressors? BioEssays 14, 807-815.
11. Marsh, T.C., Vesenka, J., Henderson, E., 1995. A new DNA nanostructure, the G-wire, imaged by scanning probe microscopy. Nucleic Acids Res. 23, 696-700.
12. Milligan, J.F., Krawczyk, S.H., Wadwani, S., Matteucci, M.D., 1993. An anti-parallel triple helix motif with oligodeoxynucleotides containing 2′-deoxyguanosine and 7-deaza-2′-deoxyxanthosine. Nucleic Acids Res. 21, 327-333.
13. Olivas, W.M., Maher, L.J., 1995. Competitive triplex/quadruplex equilibria involving guanine-rich oligonucleotides. Biochemistry 34, 278-284.
14. Olivas, W.M., Maher, L.J., 1995. Overcoming potassium-mediated triplex inhibition. Nucleic Acids Res. 23, 1936-1941.
15. Sambrook, J., Fritsch, E.F., Maniatis, T., 1989. Molecular Cloning: A Laboratory Manual, 2nd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
16. Sawadogo, M., Van Dyke, M.W., 1991. A rapid method for the purification of deprotected oligodeoxynucleotides. Nucleic Acids Res. 19, 674
17. Sen, D., Gilbert, W., 1991. A sodium-potassium switch in the formation of four-stranded G4-DNA. Nature 344, 410-414.
18. Sen, D., Gilbert, W., 1992. Novel DNA superstructures formed by telomere-like oligomers. Biochemistry 31, 65-70.
19. Sen, D., Gilbert, W., 1992. Guanine quartet structures. Meth. Enzymol. 211, 191-199.
20. Stull, R.A., Szoka, F.C., 1995. Antigene, ribozyme and aptamer nucleic acid drugs: progress and prospects. Pharm. Res. 12, 465-483.
21. Wang, K.Y., McCurdy, S., Shea, R.G., Swaminathan, S., Bolton, P.H., 1993. A DNA aptamer which binds to and inhibits thrombin exhibits a new structural motif for DNA. Biochemistry 32, 1899-1904.
22. Williamson, J.R., 1994. G-quartet structures in telomeric DNA. Annu. Rev. Biophys. Biomol. Struct. 23, 703-730.