메뉴 건너뛰기




Volumn 17, Issue 1, 2000, Pages 179-188

Polymorphism and divergence in the β-globin replication origin initiation region

Author keywords

DNA replication; Globin; Human; Mutation; Polymerase fidelity; Polymorphism

Indexed keywords

BETA GLOBIN; DOUBLE STRANDED DNA;

EID: 0033968771     PISSN: 07374038     EISSN: None     Source Type: Journal    
DOI: 10.1093/oxfordjournals.molbev.a026230     Document Type: Article
Times cited : (19)

References (50)
  • 1
    • 0032525231 scopus 로고    scopus 로고
    • Cell cycle modulation of protein-DNA interactions at a human replication origin
    • ABDURASHIDOVA, G., S. RIVA, G. BIAMONTI, M. GIACCA, and A. FALASCHI. 1998. Cell cycle modulation of protein-DNA interactions at a human replication origin. EMBO J. 17: 2961-2969.
    • (1998) EMBO J. , vol.17 , pp. 2961-2969
    • Abdurashidova, G.1    Riva, S.2    Biamonti, G.3    Giacca, M.4    Falaschi, A.5
  • 3
    • 0032516695 scopus 로고    scopus 로고
    • Genetic dissection of a mammalian replicator in the human β-globin locus
    • ALADJEM, M. I., L. W. RODEWALD, J. L. KOLMAN, and G. M. WAHL. 1998. Genetic dissection of a mammalian replicator in the human β-globin locus. Science 281:1005-1009.
    • (1998) Science , vol.281 , pp. 1005-1009
    • Aladjem, M.I.1    Rodewald, L.W.2    Kolman, J.L.3    Wahl, G.M.4
  • 5
    • 0032472223 scopus 로고    scopus 로고
    • Discrete start sites for DNA synthesis in the yeast ARS1 origin
    • BIELINSKY, A.-K., and S. A. GERBI. 1998. Discrete start sites for DNA synthesis in the yeast ARS1 origin. Science 279: 95-98.
    • (1998) Science , vol.279 , pp. 95-98
    • Bielinsky, A.-K.1    Gerbi, S.A.2
  • 6
    • 0026739088 scopus 로고
    • Evolutionary consequences of nonrandom damage and repair of chromatin domains
    • BOULIKAS, T. 1992. Evolutionary consequences of nonrandom damage and repair of chromatin domains. J. Mol. Evol. 35: 156-180.
    • (1992) J. Mol. Evol. , vol.35 , pp. 156-180
    • Boulikas, T.1
  • 7
    • 0028314982 scopus 로고
    • Intergenic DNA and the sequence requirements for replication initiation in eukaryotes
    • BREWER, B. J. 1994. Intergenic DNA and the sequence requirements for replication initiation in eukaryotes. Curr. Opin. Genet. Dev. 4:196-202.
    • (1994) Curr. Opin. Genet. Dev. , vol.4 , pp. 196-202
    • Brewer, B.J.1
  • 9
    • 0029585836 scopus 로고
    • Genetic analysis of an ARS element from the fission yeast schizosaccharomyces pombe
    • CLYNE, R. K., and T. J. KELLY. 1995. Genetic analysis of an ARS element from the fission yeast Schizosaccharomyces pombe. EMBO J. 14:6348-6357.
    • (1995) EMBO J. , vol.14 , pp. 6348-6357
    • Clyne, R.K.1    Kelly, T.J.2
  • 10
    • 0033043743 scopus 로고    scopus 로고
    • Replication origins in metazoan chromosomes: Fact or fiction?
    • DEPAMPHILIS, M. L. 1999. Replication origins in metazoan chromosomes: fact or fiction? Bioessays 21:5-16.
    • (1999) Bioessays , vol.21 , pp. 5-16
    • Depamphilis, M.L.1
  • 12
    • 0028272137 scopus 로고
    • Modular sequence elements associated with origin regions in eukaryotic chromosomal DNA
    • DOBBS, D. L., W.-L. SHAIU, and R. M. BENBOW. 1994. Modular sequence elements associated with origin regions in eukaryotic chromosomal DNA. Nucleic Acids Res. 22: 2479-2489.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 2479-2489
    • Dobbs, D.L.1    Shaiu, W.-L.2    Benbow, R.M.3
  • 13
    • 0028345409 scopus 로고
    • Molecular and population genetic analysis of allelic sequence diversity at the human β-globin locus
    • FULLERTON, S. M., R. M. HARDING, A. J. BOYCE, and J. B. CLEGG. 1994. Molecular and population genetic analysis of allelic sequence diversity at the human β-globin locus. Proc. Natl. Acad. Sci. USA 91:1805-1809.
    • (1994) Proc. Natl. Acad. Sci. USA , vol.91 , pp. 1805-1809
    • Fullerton, S.M.1    Harding, R.M.2    Boyce, A.J.3    Clegg, J.B.4
  • 14
    • 0029926233 scopus 로고    scopus 로고
    • Homoplasy for size at microsatellite loci in humans and chimpanzee
    • GARZA, J. C., and N. B. FREIMER. 1996. Homoplasy for size at microsatellite loci in humans and chimpanzee. Genome Res. 6:211-217.
    • (1996) Genome Res. , vol.6 , pp. 211-217
    • Garza, J.C.1    Freimer, N.B.2
  • 15
    • 0030050995 scopus 로고    scopus 로고
    • Mapping the sites of initiation of DNA replication in rat and human rRNA genes
    • GENCHEVA, M., B. ANACHKOVA, and G. RUSSEV. 1996. Mapping the sites of initiation of DNA replication in rat and human rRNA genes. J. Biol. Chem. 271:2608-2614.
    • (1996) J. Biol. Chem. , vol.271 , pp. 2608-2614
    • Gencheva, M.1    Anachkova, B.2    Russev, G.3
  • 16
    • 0032055385 scopus 로고    scopus 로고
    • Replication origins in yeast versus metazoa: Separation of the haves and have nots
    • GILBERT, D. M. 1998. Replication origins in yeast versus metazoa: separation of the haves and have nots. Curr. Opin. Genet. Dev. 8:194-199.
    • (1998) Curr. Opin. Genet. Dev. , vol.8 , pp. 194-199
    • Gilbert, D.M.1
  • 17
    • 0029067907 scopus 로고
    • Complete sequence of the 43-kb human ribosomal DNA repeat: Analysis of the intergenic spacer
    • GONZALEZ, I. L., and J. E. SYLVESTER. 1995. Complete sequence of the 43-kb human ribosomal DNA repeat: analysis of the intergenic spacer. Genomics 27:320-328.
    • (1995) Genomics , vol.27 , pp. 320-328
    • Gonzalez, I.L.1    Sylvester, J.E.2
  • 18
    • 0031018604 scopus 로고    scopus 로고
    • Microsatellite allelic homoplasy due to variable flanking sequences
    • GRIMALDI, M.-C., and B. CROUAU-ROY. 1997. Microsatellite allelic homoplasy due to variable flanking sequences. J. Mol. Evol. 44:336-340.
    • (1997) J. Mol. Evol. , vol.44 , pp. 336-340
    • Grimaldi, M.-C.1    Crouau-Roy, B.2
  • 21
    • 0025043566 scopus 로고
    • A space-efficient algorithm for local similarities
    • HUANG, X. Q., R. C. HARDISON, and W. MILLER. 1990. A space-efficient algorithm for local similarities. Comput. Appl. Biosci. 6:373-381.
    • (1990) Comput. Appl. Biosci. , vol.6 , pp. 373-381
    • Huang, X.Q.1    Hardison, R.C.2    Miller, W.3
  • 22
    • 0001935493 scopus 로고
    • Gene genealogies and the coalescent process
    • D. FUTUYAMA and J. ANTONOVICS, eds. Oxford University Press, Oxford, England
    • HUDSON, R. R. 1990. Gene genealogies and the coalescent process. Pp. 1-44 in D. FUTUYAMA and J. ANTONOVICS, eds. Oxford surveys in evolutionary biology. Oxford University Press, Oxford, England.
    • (1990) Oxford Surveys in Evolutionary Biology , pp. 1-44
    • Hudson, R.R.1
  • 23
    • 0023339852 scopus 로고
    • A test of neutral molecular evolution based on nucleotide data
    • HUDSON, R. R., M. KREITMAN, and M. AGUADÉ. 1987. A test of neutral molecular evolution based on nucleotide data. Genetics 116:153-159.
    • (1987) Genetics , vol.116 , pp. 153-159
    • Hudson, R.R.1    Kreitman, M.2    Aguadé, M.3
  • 24
    • 0027749608 scopus 로고
    • Replication structure of the human β-globin gene domain
    • KITSBERG, D., S. SELIG, I. KESHET, and H. CEDAR. 1993. Replication structure of the human β-globin gene domain. Nature 366:588-560.
    • (1993) Nature , vol.366 , pp. 588-1560
    • Kitsberg, D.1    Selig, S.2    Keshet, I.3    Cedar, H.4
  • 26
    • 0032231701 scopus 로고    scopus 로고
    • Neighboring-nucleotide effects on the rates of germ-line single-base-pair substitution in human genes
    • KRAWCZAK, M., E. V. BALL, and D. N. COOPER. 1998. Neighboring-nucleotide effects on the rates of germ-line single-base-pair substitution in human genes. Am. J. Hum. Genet. 63:474-488.
    • (1998) Am. J. Hum. Genet. , vol.63 , pp. 474-488
    • Krawczak, M.1    Ball, E.V.2    Cooper, D.N.3
  • 27
    • 0026639873 scopus 로고
    • DNA replication fidelity
    • KUNKEL, T. A. 1992. DNA replication fidelity. J. Biol. Chem. 267:18251-18254.
    • (1992) J. Biol. Chem. , vol.267 , pp. 18251-18254
    • Kunkel, T.A.1
  • 28
    • 0022577219 scopus 로고
    • The base substitution fidelity of eukaryotic DNA polymerases. Mispairing frequencies, site preferences, insertion preferences, and base substitution by dislocation
    • KUNKEL, T. A., and P. S. ALEXANDER. 1986. The base substitution fidelity of eukaryotic DNA polymerases. Mispairing frequencies, site preferences, insertion preferences, and base substitution by dislocation. J. Biol. Chem. 261:160-166.
    • (1986) J. Biol. Chem. , vol.261 , pp. 160-166
    • Kunkel, T.A.1    Alexander, P.S.2
  • 29
    • 0023790391 scopus 로고
    • Mutagenesis by transient misalignment
    • KUNKEL, T. A., and A. SONI. 1988. Mutagenesis by transient misalignment. J. Biol. Chem. 263:14784-14789.
    • (1988) J. Biol. Chem. , vol.263 , pp. 14784-14789
    • Kunkel, T.A.1    Soni, A.2
  • 30
    • 0023649836 scopus 로고
    • High frequency of short frameshifts in poly-CA/GT tandem borne by bacteriophage M13 in Eschericia coli K-12
    • LEVINSON, G., and G. GUTMAN. 1987. High frequency of short frameshifts in poly-CA/GT tandem borne by bacteriophage M13 in Eschericia coli K-12. Nucleic Acids Res. 15:5323-5338.
    • (1987) Nucleic Acids Res. , vol.15 , pp. 5323-5338
    • Levinson, G.1    Gutman, G.2
  • 31
    • 0029610843 scopus 로고
    • Concerted evolution of the tandemly repeated genes encoding primate U2 small nuclear RNA (the RNU2 locus) does not prevent rapid diversification of the (CT)n-(GA)n microsatellite embedded within the U2 repeat unit
    • LIAO, D., and A. M. WEINER. 1995. Concerted evolution of the tandemly repeated genes encoding primate U2 small nuclear RNA (the RNU2 locus) does not prevent rapid diversification of the (CT)n-(GA)n microsatellite embedded within the U2 repeat unit. Genomics 30:583-593.
    • (1995) Genomics , vol.30 , pp. 583-593
    • Liao, D.1    Weiner, A.M.2
  • 32
    • 0031819475 scopus 로고    scopus 로고
    • Microsatellite single nucleotide polymorphisms in the HLA-DQ region
    • LIN, L., L. JIN, X. LIN, A. VOROS, P. UNDERHILL, and E. MIGNOT. 1998. Microsatellite single nucleotide polymorphisms in the HLA-DQ region. Tissue Antigens 52:9-18.
    • (1998) Tissue Antigens , vol.52 , pp. 9-18
    • Lin, L.1    Jin, L.2    Lin, X.3    Voros, A.4    Underhill, P.5    Mignot, E.6
  • 33
    • 0025916386 scopus 로고
    • How many pols does it take to replicate nuclear DNA?
    • LINN, S. 1991. How many pols does it take to replicate nuclear DNA? Cell 66:185-187.
    • (1991) Cell , vol.66 , pp. 185-187
    • Linn, S.1
  • 34
    • 0027486027 scopus 로고
    • Initiation and termination of DNA replication in human rRNA genes
    • LITTLE, R. D., T. H. PLATT, and C. L. SCHILDKRAUT. 1993. Initiation and termination of DNA replication in human rRNA genes. Mol. Cell. Biol. 13:6600-6613.
    • (1993) Mol. Cell. Biol. , vol.13 , pp. 6600-6613
    • Little, R.D.1    Platt, T.H.2    Schildkraut, C.L.3
  • 36
    • 0008882372 scopus 로고    scopus 로고
    • The initiation of DNA replication in the yeast sacharomyces cerevisiae
    • J. J. BLOW, ed. Oxford University Press, Oxford, England
    • MARAHRENS, Y., and B. STILLMAN. 1996. The initiation of DNA replication in the yeast Sacharomyces cerevisiae. Pp. 66-95 in J. J. BLOW, ed. Eukaryotic DNA replication. Oxford University Press, Oxford, England.
    • (1996) Eukaryotic DNA Replication , pp. 66-95
    • Marahrens, Y.1    Stillman, B.2
  • 37
    • 0026548222 scopus 로고
    • DNA helical stability accounts for mutational defects in a yeast replication origin
    • NATALE, D. A., A. E. SCHUBERT, and D. KOWALSKI. 1992. DNA helical stability accounts for mutational defects in a yeast replication origin. Proc. Natl. Acad. Sci. USA 89: 2654-2658.
    • (1992) Proc. Natl. Acad. Sci. USA , vol.89 , pp. 2654-2658
    • Natale, D.A.1    Schubert, A.E.2    Kowalski, D.3
  • 38
    • 0027267271 scopus 로고
    • Ease of DNA unwinding is a conserved property of yeast replication origins
    • NATALE, D. A., R. M. UMEK, and D. KOWALSKI. 1993. Ease of DNA unwinding is a conserved property of yeast replication origins. Nucleic Acids Res. 21:555-560.
    • (1993) Nucleic Acids Res. , vol.21 , pp. 555-560
    • Natale, D.A.1    Umek, R.M.2    Kowalski, D.3
  • 40
    • 0001317405 scopus 로고    scopus 로고
    • Fidelity of DNA replication
    • M. L. DEPAMPHILIS, ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York
    • ROBERTS, J. D., and T. A. KUNKEL. 1996. Fidelity of DNA replication. Pp. 217-247 in M. L. DEPAMPHILIS, ed. DNA replication in eukaryotic cells. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York.
    • (1996) DNA Replication in Eukaryotic Cells , pp. 217-247
    • Roberts, J.D.1    Kunkel, T.A.2
  • 41
    • 0032972599 scopus 로고    scopus 로고
    • DnaSP version 3: An integrated program for molecular population genetics and molecular evolution analysis
    • ROZAS, J., and R. ROZAS. 1999. DnaSP version 3: an integrated program for molecular population genetics and molecular evolution analysis. Bioinformatics 15:174-175.
    • (1999) Bioinformatics , vol.15 , pp. 174-175
    • Rozas, J.1    Rozas, R.2
  • 42
    • 0022366660 scopus 로고
    • Evolution of the primate β-globin gene region: High rate of variation in CpG dinucleotides and in short repeated sequences between man and chimpanzee
    • SAVATIER, P., G. TRABUCHET, C. FAURE, Y. CHEBLOUNE, M. GOUY, G. VERDIER, and V. M. NIGON. 1985. Evolution of the primate β-globin gene region: high rate of variation in CpG dinucleotides and in short repeated sequences between man and chimpanzee. J. Mol. Biol. 182:21-29.
    • (1985) J. Mol. Biol. , vol.182 , pp. 21-29
    • Savatier, P.1    Trabuchet, G.2    Faure, C.3    Chebloune, Y.4    Gouy, M.5    Verdier, G.6    Nigon, V.M.7
  • 43
    • 0024966756 scopus 로고
    • Chromosomal location and evolutionary rate variation in enterobacterial genes
    • SHARP, P. M., D. C. SHIELDS, K. H. WOLFE, and W. H. LI. 1989. Chromosomal location and evolutionary rate variation in enterobacterial genes. Science 246:808-810.
    • (1989) Science , vol.246 , pp. 808-810
    • Sharp, P.M.1    Shields, D.C.2    Wolfe, K.H.3    Li, W.H.4
  • 44
    • 0032403420 scopus 로고    scopus 로고
    • Recombination breakpoints in the human β-globin gene cluster
    • SMITH, R. A., P. J. HO, J. B. CLEGG, J. R. KIDD, and S. L. THEIN. 1998. Recombination breakpoints in the human β-globin gene cluster. Blood 92:4415-4421.
    • (1998) Blood , vol.92 , pp. 4415-4421
    • Smith, R.A.1    Ho, P.J.2    Clegg, J.B.3    Kidd, J.R.4    Thein, S.L.5
  • 45
    • 0031953203 scopus 로고    scopus 로고
    • Structural and functional implications of sequence diversity of Pseudomonas aeruginosa genes oriC, ampC, and fliC
    • SPANGENBERG, C., T. C. MONTIE, and B. TUMMLER. 1998. Structural and functional implications of sequence diversity of Pseudomonas aeruginosa genes oriC, ampC, and fliC. Electrophresis 19:545-550.
    • (1998) Electrophresis , vol.19 , pp. 545-550
    • Spangenberg, C.1    Montie, T.C.2    Tummler, B.3
  • 46
    • 0024313579 scopus 로고
    • Statistical method for testing the neutral mutation hypothesis by DNA polymorphism
    • TAJIMA, F. 1989. Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123: 585-595.
    • (1989) Genetics , vol.123 , pp. 585-595
    • Tajima, F.1
  • 47
    • 0032807435 scopus 로고    scopus 로고
    • DNA sequence and functional analysis of homologous ARS elements of Saccharomyces cerevisiae and S. carlsbergensis
    • THEIS, J. F., C. YANG, C. B. SCHAEFER, and C. S. NEWLON. 1999. DNA sequence and functional analysis of homologous ARS elements of Saccharomyces cerevisiae and S. carlsbergensis. Genetics 152:943-952.
    • (1999) Genetics , vol.152 , pp. 943-952
    • Theis, J.F.1    Yang, C.2    Schaefer, C.B.3    Newlon, C.S.4
  • 48
    • 0029903164 scopus 로고    scopus 로고
    • DNA-replication fidelity, mismatch repair and genome instability in cancer cells
    • UMAR, A., and T. A. KUNKEL. 1996. DNA-replication fidelity, mismatch repair and genome instability in cancer cells. Eur. J. Biochem. 238:297-307.
    • (1996) Eur. J. Biochem. , vol.238 , pp. 297-307
    • Umar, A.1    Kunkel, T.A.2
  • 49
    • 0016491430 scopus 로고
    • On the number of segregating sites in genetical models without recombination
    • WATTERSON, G. A. 1975. On the number of segregating sites in genetical models without recombination. Theor. Popul. Biol. 7:256-276.
    • (1975) Theor. Popul. Biol. , vol.7 , pp. 256-276
    • Watterson, G.A.1
  • 50
    • 0032573432 scopus 로고    scopus 로고
    • Heterogeneous repair of N-methylpurines at the nucleotide level in normal human cells
    • YE, N., G. P. HOLMQUIST, and T. R. O'CONNOR. 1998. Heterogeneous repair of N-methylpurines at the nucleotide level in normal human cells. J. Mol. Biol. 284:269-285.
    • (1998) J. Mol. Biol. , vol.284 , pp. 269-285
    • Ye, N.1    Holmquist, G.P.2    O'Connor, T.R.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.