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Volumn 13, Issue 1, 1996, Pages 105-114

Estimating synonymous and nonsynonymous substitution rates

Author keywords

evolutionary model; maximum likelihood; rbcL; Silent substitution rate

Indexed keywords

ARTICLE; CODON; EVOLUTION; MAXIMUM LIKELIHOOD METHOD; MOLECULAR GENETICS; NATURAL SELECTION; NUCLEOTIDE SEQUENCE; STATISTICAL MODEL; STATISTICAL PARAMETERS;

EID: 0030054305     PISSN: 07374038     EISSN: None     Source Type: Journal    
DOI: 10.1093/oxfordjournals.molbev.a025549     Document Type: Article
Times cited : (76)

References (24)
  • 1
    • 0026665044 scopus 로고
    • Amino acid substitution of proteins coded for in mitochondrial DNA during mammalian evolution
    • ADACHI, J., and M. HASEGAWA. 1992. Amino acid substitution of proteins coded for in mitochondrial DNA during mammalian evolution. Jpn. J. Genet. 67:187-197.
    • (1992) Jpn. J. Genet. , vol.67 , pp. 187-197
    • Adachi, J.1    Hasegawa, M.2
  • 2
    • 0004128472 scopus 로고
    • The Johns Hopkins University Press, Baltimore
    • EDWARDS, A. W. F. 1992. Likelihood, 2nd ed. The Johns Hopkins University Press, Baltimore.
    • (1992) Likelihood, 2nd Ed.
    • Edwards, A.W.F.1
  • 3
    • 0019797407 scopus 로고
    • Evolutionary trees from DNA sequences: A maximum likelihood approach
    • FELSENSTEIN, J. 1981. Evolutionary trees from DNA sequences: a maximum likelihood approach. J. Mol. Evol. 17:368-376.
    • (1981) J. Mol. Evol. , vol.17 , pp. 368-376
    • Felsenstein, J.1
  • 4
    • 0026469557 scopus 로고
    • Relative rates of nucleotide substitution at the rbcL locus of monocotyledonous plants
    • GAUT, B. S., S. V. MUSE, W. D. CLARK, and M. T. CLEGG. 1992. Relative rates of nucleotide substitution at the rbcL locus of monocotyledonous plants. J. Mol. Evol. 35:292-303.
    • (1992) J. Mol. Evol. , vol.35 , pp. 292-303
    • Gaut, B.S.1    Muse, S.V.2    Clark, W.D.3    Clegg, M.T.4
  • 5
    • 0028168856 scopus 로고
    • A codon-based model of nucleotide substitution for protein-coding DNA sequences
    • GOLDMAN, N., and Z. YANG. 1994. A codon-based model of nucleotide substitution for protein-coding DNA sequences. Mol. Biol. Evol. 11:725-736.
    • (1994) Mol. Biol. Evol. , vol.11 , pp. 725-736
    • Goldman, N.1    Yang, Z.2
  • 6
    • 0022376704 scopus 로고
    • Dating of the human-ape splitting by a molecular clock of mitochondrial DNA
    • HASEGAWA, M., H. KISHINO, and T. YANO. 1985. Dating of the human-ape splitting by a molecular clock of mitochondrial DNA. J. Mol. Evol. 22:160-174.
    • (1985) J. Mol. Evol. , vol.22 , pp. 160-174
    • Hasegawa, M.1    Kishino, H.2    Yano, T.3
  • 7
    • 0023764283 scopus 로고
    • Pattern of nucleotide substitution at major histocompatibility complex class I loci reveals overdominant selection
    • HUGHES, A. L., and M. NEI. 1988. Pattern of nucleotide substitution at major histocompatibility complex class I loci reveals overdominant selection. Nature 335:167-170.
    • (1988) Nature , vol.335 , pp. 167-170
    • Hughes, A.L.1    Nei, M.2
  • 8
    • 0025147562 scopus 로고
    • Positive Darwinian selection promotes charge profile diversity in the antigen-binding cleft of class I major-histocompatibility-complex molecules
    • HUGHES, A. L., T. OTA, and M. NEI. 1990. Positive Darwinian selection promotes charge profile diversity in the antigen-binding cleft of class I major-histocompatibility-complex molecules. Mol. Biol. Evol. 7:515-524.
    • (1990) Mol. Biol. Evol. , vol.7 , pp. 515-524
    • Hughes, A.L.1    Ota, T.2    Nei, M.3
  • 9
    • 0000732090 scopus 로고
    • Evolution of protein molecules
    • H. M. MUNRO, ed. Academic Press, New York
    • JUKES, T. H., and C. R. CANTOR. 1969. Evolution of protein molecules. Pp. 21-132 in H. M. MUNRO, ed. Mammalian protein metabolism. Academic Press, New York.
    • (1969) Mammalian Protein Metabolism , pp. 21-132
    • Jukes, T.H.1    Cantor, C.R.2
  • 10
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
    • KIMURA, M. 1980. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16:111-120.
    • (1980) J. Mol. Evol. , vol.16 , pp. 111-120
    • Kimura, M.1
  • 11
    • 0027163079 scopus 로고
    • Evolution of hominoid mitochondrial DNA with special reference to the silent substitution rate over the genome
    • KONDO, R., S. HORAI, Y. SATTA, and N. TAKAHATA. 1993. Evolution of hominoid mitochondrial DNA with special reference to the silent substitution rate over the genome. J. Mol. Evol. 36:517-531.
    • (1993) J. Mol. Evol. , vol.36 , pp. 517-531
    • Kondo, R.1    Horai, S.2    Satta, Y.3    Takahata, N.4
  • 12
    • 0024488925 scopus 로고
    • Inferring the number of evolutionary events from DNA coding sequence differences
    • LEWONTIN, R. C. 1989. Inferring the number of evolutionary events from DNA coding sequence differences. Mol. Biol. Evol. 6:15-32.
    • (1989) Mol. Biol. Evol. , vol.6 , pp. 15-32
    • Lewontin, R.C.1
  • 13
    • 0027403961 scopus 로고
    • Unbiased estimation of the rates of synonymous and nonsynonymous substitution
    • LI, W.-H. 1993. Unbiased estimation of the rates of synonymous and nonsynonymous substitution. J. Mol. Evol. 36: 96-99.
    • (1993) J. Mol. Evol. , vol.36 , pp. 96-99
    • Li, W.-H.1
  • 14
    • 0022005270 scopus 로고
    • A new method for estimating synonymous and nonsynonymous rates of nucleotide substitution considering the relative likelihood of nucleotide and codon changes
    • LI, W.-H., C.-I. WU, and C.-C. LUO. 1985. A new method for estimating synonymous and nonsynonymous rates of nucleotide substitution considering the relative likelihood of nucleotide and codon changes. Mol. Biol. Evol. 2:150-174.
    • (1985) Mol. Biol. Evol. , vol.2 , pp. 150-174
    • Li, W.-H.1    Wu, C.-I.2    Luo, C.-C.3
  • 15
    • 0019134329 scopus 로고
    • Molecular evolution of mRNA: A method for estimating evolutionary rates of synonymous and amino acid substitution from homologous sequences and its application
    • MIYATA, T., and T. YASUNAGA. 1980. Molecular evolution of mRNA: a method for estimating evolutionary rates of synonymous and amino acid substitution from homologous sequences and its application. J. Mol. Evol. 16:23-26.
    • (1980) J. Mol. Evol. , vol.16 , pp. 23-26
    • Miyata, T.1    Yasunaga, T.2
  • 16
    • 0028900996 scopus 로고
    • Evolutionary analyses of DNA sequences subject to constraints on secondary structure
    • MUSE, S. V. 1995. Evolutionary analyses of DNA sequences subject to constraints on secondary structure. Genetics 139: 1429-1439.
    • (1995) Genetics , vol.139 , pp. 1429-1439
    • Muse, S.V.1
  • 17
    • 0028024626 scopus 로고
    • A likelihood approach for comparing synonymous and nonsynonymous nucleotide substitution rates with application to the chloroplast genome
    • MUSE, S. V., and B. S. GAUT. 1994. A likelihood approach for comparing synonymous and nonsynonymous nucleotide substitution rates with application to the chloroplast genome. Mol. Biol. Evol. 11:715-724.
    • (1994) Mol. Biol. Evol. , vol.11 , pp. 715-724
    • Muse, S.V.1    Gaut, B.S.2
  • 18
    • 0026670564 scopus 로고
    • Testing for equality of evolutionary rates
    • MUSE, S. V., and B. S. WEIR. 1992. Testing for equality of evolutionary rates. Genetics 132:269-276.
    • (1992) Genetics , vol.132 , pp. 269-276
    • Muse, S.V.1    Weir, B.S.2
  • 20
    • 0022507362 scopus 로고
    • Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions
    • NEI, M., and T. GOJOBORI. 1986. Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions. Mol. Biol. Evol. 3:418-426.
    • (1986) Mol. Biol. Evol. , vol.3 , pp. 418-426
    • Nei, M.1    Gojobori, T.2
  • 21
    • 0028286120 scopus 로고
    • Variance and covariances of the number of synonymous substitutions per site
    • OTA, T., and M. NEI. 1994. Variance and covariances of the number of synonymous substitutions per site. J. Mol. Evol. 11:613-619.
    • (1994) J. Mol. Evol. , vol.11 , pp. 613-619
    • Ota, T.1    Nei, M.2
  • 22
    • 0027533924 scopus 로고
    • Evolution of the Zfx and Zfy genes: Rates and interdependence between the genes
    • PAMILO, P., and N. O. BIANCHI. 1993. Evolution of the Zfx and Zfy genes: rates and interdependence between the genes. Mol. Biol. Evol. 10:271-281.
    • (1993) Mol. Biol. Evol. , vol.10 , pp. 271-281
    • Pamilo, P.1    Bianchi, N.O.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.