In vivo identification of nuclear factors interacting with the conserved elements of box C/D small nucleolar RNAs

Molecular and Cellular Biology

Volumn 18, Issue 2, 1998, Pages 1023-1028

  Caffarelli, Elisa ^a   Losito, Massimo ^a   Giorgi, Corinna ^a   Fatica, Alessandro ^a   Bozzoni, Irene ^a  

^a SAPIENZA UNIVERSITY OF ROME   (Italy)

Author keywords

[No Author keywords available]

Indexed keywords

NUCLEAR FACTOR; NUCLEAR RNA;

ARTICLE; BIOGENESIS; COMPLEX FORMATION; CROSS LINKING; GENETIC CONSERVATION; IMMUNOPRECIPITATION; INTRON; NONHUMAN; NUCLEOLUS; PRIORITY JOURNAL; PROTEIN ASSEMBLY; PROTEIN FAMILY; PROTEIN PROCESSING; PROTEIN PROTEIN INTERACTION; XENOPUS LAEVIS;

EID: 0031907732     PISSN: 02707306     EISSN: None     Source Type: Journal    
DOI: 10.1128/MCB.18.2.1023     Document Type: Article

References (42)

1. Bachellerie, J. P., B. Michot, M. Nicoloso, A. Balakin, J. Ni, and M. J. Fournier. 1995. Antisense snoRNAs: a family of nucleolar RNAs with long complementarities to rRNA. Trends Biochem. Sci. 20:261-264.
2. Balakin, A. G., L. Smith, and M. J. Fournier. 1996. The RNA world of the nucleolus: two major families of small RNAs defined by different box elements with related functions. Cell 86:823-834.
3. Baserga, S. J., X. W. Yang, and J. A. Steitz. 1991. An intact box C sequence in the U3 snRNA is required for binding of fibrillarin, the protein common to the major family of nucleolar snRNPs. EMBO J. 10:2645-2651.
4. Baserga, S. J., M. Gilmore-Hebert, and X. W. Yang. 1992. Distinct molecular signals for nuclear import of the nucleolar snRNA, U3. Genes Dev. 6:1120-1130.
5. Bousquet-Antonelli, C., Y. Henry, J. P. Gélugne, M. Caizergues-Ferrer, and T. Kiss. 1997. A small nucleolar RNP protein is required for pseudouridylation of eukaryotic ribosomal RNAs. EMBO J. 16:4770-4776.
6. Caffarelli, E., P. Fragapane, C. Gehring, and I. Bozzoni. 1987. The accumulation of mature RNA for the Xenopus laevis ribosomal protein L1 is controlled at the level of splicing and turnover of the precursor RNA. EMBO J. 6:3493-3498.
7. Caffarelli, E., M. Arese, B. Santoro, P. Fragapane, and I. Bozzoni. 1994. In vitro study of processing of the intron-encoded U16 small nucleolar RNA in Xenopus laevis. Mol. Cell. Biol. 14:2966-2974.
8. Caffarelli, E., A. Fatica, S. Prislei, E. De Gregorio, P. Fragapane, and I. Bozzoni. 1996. Processing of intron-encoded U16 and U18 snoRNAs: the conserved C and D boxes control both the processing reaction and the stability of the mature snoRNA. EMBO J. 15:1121-1131.
9. ++-dependent ribonuclease that functions in U16 snoRNA processing in X. laevis. Biochem. Biophys. Res. Commun. 233:514-517.
10. Cavaillé, J., M. Nicoloso, and J. P. Bachellerie. 1996. Targeted ribose methylation of RNA in vivo directed by tailored antisense RNA guides. Nature 383:732-735.
11. Fournier, M. J., and E. S. Maxwell. 1993. The nucleolar snRNAs: catching up with the spliceosomal snRNAs. Trends Biochem. Sci. 18:131-135.
12. Fragapane, P., E. Caffarelli, M. Lener, S. Prislei, B. Santoro, and I. Bozzoni. 1992. Identification of the sequences responsible for the splicing phenotype of the regulatory intron of the L1 ribosomal protein gene of Xenopus laevis. Mol. Cell. Biol. 12:1117-1125.
13. Fragapane, P., S. Prislei, A. Michienzi, E. Caffarelli, and I. Bozzoni. 1993. A novel small nucleolar RNA (U16) is encoded inside a ribosomal protein intron and originates by processing of the pre-mRNA. EMBO J. 12:2921-2928.
14. Ganot, P., M.-L. Bortolin, and T. Kiss. 1997. Site specific pseudouridine formation in preribosomal RNA is guided by small nucleolar RNAs. Cell 89:799-809.
15. Ganot, P., M. Caizergues-Ferrer, and T. Kiss. 1997. The family of box ACA small nucleolar RNAs is defined by an evolutionary conserved secondary structure and ubiquitous sequence elements essential for RNA accumulation. Genes Dev. 11:941-956.
16. Huang, G. M., A. Jarmolowski, J. C. R. Struck, and M. J. Fournier. 1992. Accumulation of U14 small nuclear RNA in Saccharomyces cerevisiae requires box C, box D, and a 5′,3′ terminal stem. Mol. Cell. Biol. 12:4456-4463.
17. Kiss-Laszlò, Z., Y. Henry, J. P. Bachellerie, M. Caizergues-Ferrer, and T. Kiss. 1996. Site-specific ribose methylation of preribosomal RNA: a novel function for small nucleolar RNAs. Cell 85:1077-1088.
18. Lapeyre, B., P. Mariottini, C. Mathieu, P. Ferrer, F. Amaldi, F. Amalric, and M. Caizergues-Ferrer. 1990. Molecular cloning of Xenopus fibrillarin, a conserved U3 small nuclear ribonucleoprotein recognized by antisera from humans with autoimmune disease. Mol. Cell. Biol. 10:430-434.
19. Lubben, B., C. Marshallsay, N. Rottmann, and R. Luhrmann. 1993. Isolation of U3 snoRNP from CHO cells: a novel 55 kDa protein binds to the central part of U3 snoRNA. Nucleic Acids Res. 21:5377-5385.
20. Lubben, B., P. Fabrizio, B. Kastner, and R. Luhrmann. 1995. Isolation and characterization of the small nucleolar ribonucleoprotein particle snR30 from Saccharomyces cerevisiae. J. Biol. Chem. 270:11549-11554.
21. Maxwell, E. S., and M. J. Fournier. 1995. The small nucleolar RNAs. Annu. Rev. Biochem. 35:897-934.
22. Melton, D. A., P. A. Krieg, M. R. Rebagliati, T. Maniatis, K. Zinn, and M. R. Green. 1984. Efficient in vitro synthesis of biologically active RNA and RNA hybridization probes from plasmids containing a bacteriophage SP6 promoter. Nucleic Acids Res. 12:7035-7056.
23. Milligan, J. F., D. R. Groebe, G. W. Witherell, and O. C. Uhlembeck. 1987. Oligoribonucleotide synthesis using T7 RNA polymerase and synthetic DNA templates. Nucleic Acids Res. 15:8783-8798.
24. Ni, J., A. L. Tien, and M. J. Fournier. 1997. Small nucleolar RNAs direct site-specific synthesis of pseudouridines in ribosomal RNA. Cell 89:565-573.
25. Nicoloso, M., M. Caizergues-Ferrer, B. Michot, M. C. Azum, and J. P. Bachellerie. 1994. U20, a novel small nucleolar RNA, is encoded in an intron of the nucleolin gene in mammals. Mol. Cell. Biol. 14:5766-5776.
26. Nicoloso, M., L. H. Qu, B. Michot, and J. P. Bachellerie. 1996. Intron-encoded, antisense small nucleolar RNAs: the characterization of nine novel species points to their direct role as guides for the 2′-O-ribose methylation of rRNAs. J. Mol. Biol. 260:178-195.
27. Peculis, B. A., and J. A. Steiz. 1993. Disruption of U8 nucleolar snRNA inhibits 5.8S and 28S rRNA processing in the Xenopus oocyte. Cell 73:1233-1245.
28. Peculis, B. A., and J. A. Steiz. 1994. Sequence and structural elements critical for U8 snRNP function in Xenopus oocytes are evolutionarily conserved. Genes Dev. 8:2241-2255.
29. Peek, R., G. J. M. Pruijn, and W. J. Van Venrooij. 1996. Interaction of the La (SS-B) autoantigen with small ribosomal subunits. Eur. J. Biochem. 236:649-655.
30. Prislei, S., S. Sperandio, P. Fragapane, E. Caffarelli, C. Presutti, and I. Bozzoni. 1992. The mechanisms controlling ribosomal protein L1 pre-mRNA splicing are maintained in evolution and rely on conserved intron sequences. Nucleic Acids Res. 20:4473-4479.
31. Prislei, S., A. Michienzi, C. Presutti, P. Fragapane, and I. Bozzoni. 1993. Two different snoRNAs are encoded in introns of amphibian and human L1 ribosomal protein genes. Nucleic Acids Res. 21:5824-5830.
32. Reddy, R., and H. Busch. 1988. Small nuclear ribonucleoprotein particles, p. 1-37. In M. L. Birnstiel (ed.), Structure and function of major and minor small nuclear ribonucleotide particles. Springer-Verlag, Berlin, Germany.
33. Smith, C. M., and J. A. Steitz. 1997. Sno storm in the nucleolus: new roles for myriad small RNPs. Cell 89:669-672.
34. Terns, M. P., E. Lund, and J. E. Dahlberg. 1992. 3′-end-dependent formation of U6 small nuclear ribonucleoprotein particles in Xenopus laevis oocyte nuclei. Mol. Cell. Biol. 12:3032-3040.
35. Terns, M. P., and J. E. Dahlberg. 1994. Retention and 5′ cap trimethylation of U3 snRNA in the nucleus. Science 264:959-961.
36. Terns, M. P., C. Grimm, E. Lund, and J. E. Dahlberg. 1995. A common maturation pathway for small nucleolar RNAs. EMBO J. 14:4860-4871.
37. Tollervey, D., H. Lehtonen, R. Jansen, H. Kern, and E. C. Hurt. 1993. Temperature-sensitive mutations demonstrate roles for yeast fibrillarin in pre-rRNA processing, pre-rRNA methylation, and ribosome assembly. Cell 72:443-457.
38. Tollervey, D., and T. Kiss. 1997. Function and synthesis of small nucleolar RNAs. Curr. Opin. Cell Biol. 9:337-342.
39. Tyc, K., and J. A. Steitz. 1989. U3, U8 and U13 comprise a new class of mammalian snRNPs localized in the cell nucleolus. EMBO J. 8:3113-3119.
40. Tycowski, K. T., M. D. Shu, and J. A. Steitz. 1993. A small nucleolar RNA is processed from an intron of the human gene encoding ribosomal protein S3. Genes Dev. 7:1176-1190.
41. Watkins, N. J., R. D. Leverette, L. Xia, M. T. Andrews, and E. S. Maxwell. 1996. Elements essential for processing intronic U14 snoRNA are located at the termini of the mature snoRNA sequence and include conserved nucleotide boxes C and D. RNA 2:118-133.
42. Xia, L., N. J. Watkins, and E. S. Maxwell. 1997. Identification of specific nucleotide sequences and structural elements required for intronic U14 snoRNA processing. RNA 3:17-26.