Alternative 3'-end processing of U5 snRNA by RNase III

Genes and Development

Volumn 11, Issue 20, 1997, Pages 2741-2751

  Chanfreau, Guillaume ^a,c   Elela, Sherif Abou ^b   Ares Jr , Manuel ^b   Guthrie, Christine ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

^c INSTITUT PASTEUR   (France)

Author keywords

Endonuclease; RNT1; Saccharomyces cerevisiae; snRNP; Spliceosomal snRNA

Indexed keywords

RIBONUCLEASE III; RNA PRECURSOR; SMALL NUCLEAR RNA; TRANS ACTING FACTOR;

ARTICLE; CELL FREE SYSTEM; CONTROLLED STUDY; IMMUNOPRECIPITATION; NONHUMAN; NORTHERN BLOTTING; PRIORITY JOURNAL; RNA PROCESSING; SACCHAROMYCES CEREVISIAE; TEMPERATURE SENSITIVE MUTANT;

SACCHAROMYCES CEREVISIAE;

EID: 0030859441     PISSN: 08909369     EISSN: None     Source Type: Journal    
DOI: 10.1101/gad.11.20.2741     Document Type: Article

References (46)

1. Abou Elela, S.A., H. Igel, and M. Ares, Jr. 1996. RNase III cleaves eukaryotic preribosomal RNA at a U3 snoRNP-dependent site. Cell 85: 115-124.
2. Bram, R.J., R.A. Young, and J.A. Steitz. 1980. The ribonuclease III site flanking 23S sequences in the 30S ribosomal precursor RNA of E. coli. Cell 19: 393-401.
3. Chanfreau, G. and A. Jacquier. 1996. An RNA conformational change between the two chemical steps of group II self-splicing. EMBO J. 15: 3466-3476.
4. Chanfreau, G., S.M. Noble, and C. Guthrie. 1996. Essential yeast protein with unexpected similarity to subunits of mammalian cleavage and polyadenylation specificity factor (CPSF). Science 274: 1511-1514.
5. Christian, E.L. and M. Yarus. 1992. Analysis of the role of phosphate oxygens in the group I intron from Tetrahymena. J. Mol. Biol. 228: 743-758.
6. Ciliberto, G., N. Dathan, R. Frank, L. Philipson, and I.W. Mattaj. 1986. Formation of the 3′ end on U snRNAs requires at least three sequence elements. EMBO J. 5: 2931-2937.
7. Court, D. 1993. RNase III: A double-strand processing enzyme. In Control of mRNA stability (ed. G. Brawerman and J. Belasco), pp. 70-116. Academic Press, New York, NY.
8. Dahlberg, J.E. and E. Lund. 1988. The genes and transcription of the major small nuclear RNAs. In Structure and function of major and minor small nuclear ribonucleoprotein particles (ed. M.-L. Birnstiel), pp. 38-70. Springer-Verlag, New York, NY.
9. Frank, D.N., H. Roiha, and C. Guthrie. 1994. Architecture of the U5 small nuclear RNA. Mol. Cell. Biol. 14: 2180-2190.
10. Good, L., S. Abou Elela, and R.N. Nazar. 1994. Tetrahymena ribozyme disrupts rRNA processing in yeast. J. Biol. Chem. 269: 22169-22172.
11. Guthrie, C. and G.R. Fink. 1991. Guide to yeast genetics and molecular biology. Academic Press, San Diego, CA.
12. Guthrie, C. and B. Patterson. 1988. Spliceosomal snRNAs. Annu. Rev. Genet. 22:387-419.
13. Haltiner-Jones, M. and C. Guthrie. 1990. Unexpected flexibility in an evolutionarily conserved protein-RNA interaction: Genetic analysis of the Sm binding site. EMBO J. 9: 2555-2561.
14. Hernandez, N. and A.M. Weiner. 1986. Formation of the 3′ end of U1 snRNA requires compatible snRNA promoter elements. Cell 47: 249-258.
15. Hughes, J.M. and M. Ares, Jr. 1991. Depletion of U3 small nucleolar RNA inhibits cleavage in the 5′ external transcribed spacer of yeast pre-ribosomal RNA and impairs formation of 18S ribosomal RNA. EMBO J. 10: 4231-4239.
16. Iino, Y., A. Sugimoto, and M. Yamamoto. 1991. S. pombe pacl+, whose overexpression inhibits sexual development, encodes a ribonuclease III-like RNase. EMBO J. 10: 221-226.
17. Jenny, A., L. Minvielle-Sebastia, P.J. Preker, and W. Keller. 1996. Sequence similarity between the 73-kilodalton protein of mammalian CPSF and a subunit of yeast polyadenylation factor I. Science 274: 1514-1517.
18. Kleinschmidt, A.M. and T. Pederson. 1987. Accurate and efficient 3′ processing of U2 small nuclear RNA precursor in a fractionated cytoplasmic extract. Mol. Cell. Biol. 7:3131-3137.
19. Krainer, A.R. 1988. Pre-mRNA splicing by complementation with purified human Ul, U2, U4/U6 and U5 snRNPs. Nucleic Acids Res. 16: 9415-9429.
20. Madhani, H.D., R. Bordonne, and C. Guthrie. 1990. Multiple roles for U6 snRNA in the splicing pathway. Genes & Dev. 4: 2264-2277.
21. Madore, S.J., E.D. Wieben, and T. Pederson. 1984a. Intracellular site of U1 small nuclear RNA processing and ribonucleoprotein assembly. J. Cell. Biol. 98: 188-192.
22. Madore, S.J., E.D. Wieben, G.R. Kunkel, and T. Pederson. 1984b. Precursors of U4 small nuclear RNA. J. Cell. Biol. 99: 1140-1144.
23. Mattaj, I.W. 1988. U snRNP assembly and transport. In Structure and function of major and minor small nuclear ribonucleoprotein particles (ed. M.-L. Birnstiel), pp. 100-114. Springer-Verlag, New York, NY.
24. McCracken, S., N. Fong, K. Yankulov, S. Ballantyne, G. Pan, J. Greenblatt, S.D. Patterson, M. Wickens, and D.L. Bentley. 1997. The C-terminal domain of RNA polymerase II couples mRNA processing to transcription. Nature 385: 357-361.
25. Minvielle-Sebastia, L., P.J. Preker, and W. Keller. 1994. RNA14 and RNA15 proteins as components of a yeast pre-mRNA 3′-end processing factor. Science 266: 1702-1705.
26. Miraglia, L., S. Seiwert, A.H. Igel, and M. Ares, Jr. 1991. Limited functional equivalence of phylogenetic variation in small nuclear RNA: Yeast U2 RNA with altered branchpoint complementarity inhibits splicing and produces a dominant lethal phenotype. Proc. Natl. Acad. Sci. 88: 7061-7065.
27. Nagai, K. and I.W. Mattaj. 1994. RNA-protein interactions in the splicing snRNPs. In RNA-protein interactions (ed. K. Nagai and I.W. Mattaj), pp. 150-177. IRL Press, Oxford, UK.
28. Neuman de Vegvar, H.E. and J.E. Dahlberg. 1990. Nucleocytoplasmic transport and processing of small nuclear RNA precursors. Mol. Cell. Biol. 10: 3365-3375.
29. Neuman de Vegvar, H.E., E. Lund, and J.E. Dahlberg. 1986. 3′ end formation of U1 snRNA precursors is coupled to transcription from snRNA promoters. Cell 47: 259-266.
30. Noble, S.M. and C. Guthrie. 1996a. Identification of novel genes required for yeast pre-mRNA splicing by means of cold-sensitive mutations. Genetics 143: 67-80.
31. _. 1996b. Transcriptional pulse-chase analysis reveals a role for a novel snRNP-associated protein in the manufacture of spliceosomal snRNPs. EMBO J. 15: 4368-4379.
32. Patterson, B. and C. Guthrie. 1987. An essential yeast snRNA with a U5-like domain is required for splicing in vivo. Cell 49: 613-624.
33. Potashkin, J. and D. Frendewey. 1990. A mutation in a single gene of Schizosaccharomyces pombe affects the expression of several snRNAs and causes defects in RNA processing. EMBO J. 9: 525-534.
34. Ramamurthy, L., T.C. Ingledue, D.R. Pilch, B.K. Kay, and W.F. Marzluff. 1996. Increasing the distance between the snRNA promoter and the 3′ box decreases the efficiency of snRNA 3′-end formation. Nucleic Acids Res. 24: 4525-4534.
35. Rotondo, G. and D. Frendewey. 1996. Purification and characterization of the Pac1 ribonuclease of Schizosaccharomyces pombe. Nucleic Acids Res. 24: 2377-2386.
36. Rotondo, G., M. Gillespie, and D. Frendewey. 1995. Rescue of the fission yeast snRNA synthesis mutant snm1 by overexpression of the double-strand-specific Pac1 ribonuclease. Mol. Gen. Genet. 247: 698-708.
37. Seraphin, B. and M. Rosbash. 1989. Identification of functional U1 snRNA-pre-mRNA complexes committed to spliceosome assembly and splicing. Cell 59: 349-358.
38. Seraphin, B., N. Abovich, and M. Rosbash. 1991. Genetic depletion indicates a late role for U5 snRNP during in vitro spliceosome assembly. Nucleic Acids Res. 19: 3857-3860.
39. Siebel, C.W., R. Kanaar, and D.C. Rio. 1994. Regulation of tissue-specific P-element pre-mRNA splicing requires the RNA-binding protein PSI. Genes & Dev. 8: 1713-1725.
40. Siliciano, P.G., M.H. Jones, and C. Guthrie. 1987. Saccharomyces cerevisiae has a U1-like small nuclear RNA with unexpected properties. Science 237: 1484-1487.
41. Umen, J.G. and C. Guthrie. 1995. A novel role for a U5 snRNP protein in 3′ splice site selection. Genes & Dev. 9: 855-868.
42. Wise, J.A., D. Tollervey, D. Maloney, H. Swerdlow, E.J. Dunn, and C. Guthrie. 1983. Yeast contains small nuclear RNAs encoded by single copy genes. Cell 35: 743-751.
43. Xu, H.P., M. Riggs, L. Rodgers, and M. Wigler. 1990. A gene from S. pombe with homology to E. coli RNase III blocks conjugation and sporulation when overexpressed in wild-type cells. Nucleic Acids Res. 18: 5304.
44. Yoo, C.J. and S.L. Wolin. 1997. The yeast La protein is required for the 3′ endonucleolytic cleavage that matures tRNA precursors. Cell 89: 393-402.
45. Yuo, C.Y., M. Ares, Jr., and A.M. Weiner. 1985. Sequences required for 3′ end formation of human U2 small nuclear RNA. Cell 42: 193-202.
46. Zuker, M. 1994. Prediction of RNA secondary structure by energy minimization. Methods Mol. Biol. 25: 267-294.