Prediction of protein side chain conformations: A study on the influence of backbone accuracy on conformation stability in the rotamer space

Protein Engineering

Volumn 10, Issue 4, 1997, Pages 361-372

  Tuffery P ^a   Etchebest, C ^b   Hazout, S ^a  

^a INSERM   (France)

^b INST DE BIOLOGIE PHYSICO CHIMIQUE   (France)

Author keywords

Modelling; Protein; Rotamers; Side chains

Indexed keywords

ARTICLE; CONTROLLED STUDY; CRYSTALLOGRAPHY; MOLECULAR MODEL; PRIORITY JOURNAL; PROTEIN CONFORMATION; PROTEIN STABILITY; PROTEIN STRUCTURE;

EID: 0142140800     PISSN: 02692139     EISSN: None     Source Type: Journal    
DOI: 10.1093/protein/10.4.361     Document Type: Article

References (26)

1. Bernstein, F.C., Koetzle, T.F., Williams, G.J.B., Meyer, E.F., Brice, M.D., Rodgers, H.R., Kennard, O., Shimanouchi, T. and Tasumi, M. (1977) J. Mol. Biol., 112, 535-542.
2. Chung, S.Y. and Subbiah, S. (1996) In Hunter, L. and Klein, T.E. (eds), Pacific Symposium Biocomputing, pp. 126-141. World Scientific, Hawaii, USA.
3. Desmet, J., Maeyer, B.M.D., Hazes, B. and Lasters, I. (1992) Nature, 356, 539-542.
4. Eisenmenger, F., Argos, P. and Abagyan, R. (1993) J. Mol. Biol., 231, 849-860.
5. Hobohm, U. and Sander, C. (1994) Protein Sci., 3, 522-524.
6. Holm, L. and Sander, C. (1991) J. Mol. Biol., 218, 183-194.
7. Holm, L. and Sander, C. (1992) Proteins, 14, 213-223.
8. Hwang, J.-K. and Liao, W.-F. (1995) Protein Engng, 8, 363-370.
9. Laughton, C.A. (1994) J. Mol. Biol., 235, 1088-1097.
10. Lavery, R., Sklenar, H., Zakrzewska, K. and Pullman, B. (1986a) J. Biomol. Struct. Dynam., 3, 989-1014.
11. Lavery, R., Parker, I. and Kendrickn, J. (1986b) J. Biomol. Struct. Dyn., 4, 443-462.
12. Lee, C. and Subbiah, S. (1991) J. Mol. Biol., 217, 373-388.
13. Niugles, M. and Brunner, A.T. (1991) Protein Engng, 4, 649-650.
14. Orengo, C.A., Flores, T.P., Taylor, W.R. and Thornton, J.M. (1993) Protein Engng, 6, 485-500.
15. Orengo, C.A., Jones, D.T. and Thornton, J.M. (1994) Nature, 372, 631-634.
16. Ponder, J.W. and Richards, F.M. (1987) J. Mol. Biol., 193, 775-791.
17. Reid, L.S. and Thornton, J.M. (1989) Proteins, 5, 170-182.
18. Richmond, T. (1984) J. Mol. Biol., 178, 63-69.
19. Schrauber, H., Eisenhaber, F. and Argos, P. (1993) J. Mol. Biol., 230, 592-612.
20. Sippl, M.J. and Stegbuchner, H. (1991) Comput. Chem., 15, 73-78.
21. Summers, N.L. and Karplus, M. (1989) J. Mol. Biol., 210, 785-811.
22. Summers, N.L., Carlson, W.D. and Karplus, M. (1987) J. Mol. Biol., 196, 175-198.
23. Tuffery, P. (1995) J. Mol. Graphics, 13, 67-72.
24. Tuffery, P., Etchebest, C., Hazout, S. and Lavery, R. (1991) J. Biomol. Struct. Dyn., 8, 1267-1289.
25. Tuffery, P., Etchebest, C., Hazout, S. and Lavery, R. (1993) J. Comput. Chem., 14, 790-798.
26. Wilson, C., Gregoy, L.M. and Agard, D.A. (1993) J. Mol. Biol., 229, 996-1006.