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Volumn 286, Issue 2, 1999, Pages 403-415

Identification of three aspartic acid residues essential for catalysis by the RusA holliday junction resolvase

Author keywords

DNA repair; E. coli; Endonuclease; Recombination

Indexed keywords

ABC TRANSPORTER; ASPARAGINE; ASPARTIC ACID; MAGNESIUM ION; RESOLVASE;

EID: 0033582616     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1006/jmbi.1998.2499     Document Type: Article
Times cited : (23)

References (44)
  • 1
    • 0029850005 scopus 로고    scopus 로고
    • Modulation of recombination and DNA repair by the RecG and PriA helicases of Escherichia coli K-12
    • Al-Deib A. A., Mahdi A. A., Lloyd R. G. Modulation of recombination and DNA repair by the RecG and PriA helicases of Escherichia coli K-12. J. Bacteriol. 178:1996;6782-6789.
    • (1996) J. Bacteriol. , vol.178 , pp. 6782-6789
    • Al-Deib, A.A.1    Mahdi, A.A.2    Lloyd, R.G.3
  • 2
    • 0028120546 scopus 로고
    • Atomic structure of the RuvC resolvase: A Holliday junction-specific endonuclease from E. coli
    • Ariyoshi M., Vassylyev D. G., Iwasaki H., Nakamura H., Shinagawa H., Morikawa K. Atomic structure of the RuvC resolvase: a Holliday junction-specific endonuclease from E. coli. Cell. 78:1994;1063-1072.
    • (1994) Cell , vol.78 , pp. 1063-1072
    • Ariyoshi, M.1    Vassylyev, D.G.2    Iwasaki, H.3    Nakamura, H.4    Shinagawa, H.5    Morikawa, K.6
  • 3
    • 0029914126 scopus 로고    scopus 로고
    • Resolution of Holliday junctions in genetic recombination: RuvC protein nicks DNA at the point of strand exchange
    • Bennett R. J., West S. C. Resolution of Holliday junctions in genetic recombination: RuvC protein nicks DNA at the point of strand exchange. Proc. Natl Acad. Sci. USA. 93:1996;12217-12222.
    • (1996) Proc. Natl Acad. Sci. USA , vol.93 , pp. 12217-12222
    • Bennett, R.J.1    West, S.C.2
  • 4
    • 0030940299 scopus 로고    scopus 로고
    • Sequence-specificity and biochemical characterization of the RusA Holliday junction resolvase of Escherichia coli
    • Chan S. N., Harris L., Bolt E. L., Whitby M. C., Lloyd R. G. Sequence-specificity and biochemical characterization of the RusA Holliday junction resolvase of Escherichia coli. J. Biol. Chem. 272:1997;14873-14882.
    • (1997) J. Biol. Chem. , vol.272 , pp. 14873-14882
    • Chan, S.N.1    Harris, L.2    Bolt, E.L.3    Whitby, M.C.4    Lloyd, R.G.5
  • 5
    • 0032052829 scopus 로고    scopus 로고
    • Recognition and manipulation of branched DNA by the RusA Holliday junction resolvase of Escherichia coli
    • Chan S. N., Vincent S. D., Lloyd R. G. Recognition and manipulation of branched DNA by the RusA Holliday junction resolvase of Escherichia coli. Nucl. Acids Res. 26:1998;1560-1566.
    • (1998) Nucl. Acids Res. , vol.26 , pp. 1560-1566
    • Chan, S.N.1    Vincent, S.D.2    Lloyd, R.G.3
  • 6
    • 0032482446 scopus 로고    scopus 로고
    • Formation of RuvABC-Holliday junction complexes in vitro
    • Davis A. A., West S. C. Formation of RuvABC-Holliday junction complexes in vitro. Curr. Biol. 8:1998;725-727.
    • (1998) Curr. Biol. , vol.8 , pp. 725-727
    • Davis, A.A.1    West, S.C.2
  • 8
    • 0028953707 scopus 로고
    • Binding of the junction-resolving enzyme bacteriophage T7 endonuclease I to DNA: Separation of binding and catalysis by mutation
    • Duckett D. R., Giraud Panis M. E., Lilley D. M. J. Binding of the junction-resolving enzyme bacteriophage T7 endonuclease I to DNA: separation of binding and catalysis by mutation. J. Mol. Biol. 246:1995;95-107.
    • (1995) J. Mol. Biol. , vol.246 , pp. 95-107
    • Duckett, D.R.1    Giraud, P.M.E.2    Lilley, D.M.J.3
  • 9
    • 0028050325 scopus 로고
    • Cloning, overexpression, purification and characterization of the Escherichia coli RuvC Holliday junction resolvase
    • Dunderdale H. J., Sharples G. J., Lloyd R. G., West S. C. Cloning, overexpression, purification and characterization of the Escherichia coli RuvC Holliday junction resolvase. J. Biol. Chem. 269:1994;5187-5194.
    • (1994) J. Biol. Chem. , vol.269 , pp. 5187-5194
    • Dunderdale, H.J.1    Sharples, G.J.2    Lloyd, R.G.3    West, S.C.4
  • 10
    • 0030727120 scopus 로고    scopus 로고
    • In vitro reconstitution of the late steps of genetic recombination in E. coli
    • Eggleston A. K., Mitchell A. H., West S. C. In vitro reconstitution of the late steps of genetic recombination in E. coli. Cell. 89:1997;607-617.
    • (1997) Cell , vol.89 , pp. 607-617
    • Eggleston, A.K.1    Mitchell, A.H.2    West, S.C.3
  • 11
    • 0030472767 scopus 로고    scopus 로고
    • T4 endonuclease VII. Importance of a histidine-aspartate cluster within the zinc-binding domain
    • Giraud-Panis M. J., Lilley D. M. T4 endonuclease VII. Importance of a histidine-aspartate cluster within the zinc-binding domain. J. Biol. Chem. 271:1996;33148-33155.
    • (1996) J. Biol. Chem. , vol.271 , pp. 33148-33155
    • Giraud-Panis, M.J.1    Lilley, D.M.2
  • 12
    • 0032562544 scopus 로고    scopus 로고
    • Structural recognition and distortion by the DNA junction-resolving enzyme RusA
    • Giraud-Panis M. J., Lilley D. M. Structural recognition and distortion by the DNA junction-resolving enzyme RusA. J. Mol. Biol. 278:1998;117-133.
    • (1998) J. Mol. Biol. , vol.278 , pp. 117-133
    • Giraud-Panis, M.J.1    Lilley, D.M.2
  • 13
    • 0032493711 scopus 로고    scopus 로고
    • Sequence-specificity of Holliday junction resolution: Identification of RuvC mutants defective in metal binding and target site recognition
    • Hagan N. F. P., Vincent S. D., Ingleston S. M., Sharples G. J., Bennett R. J., West S. C., Lloyd R. G. Sequence-specificity of Holliday junction resolution: identification of RuvC mutants defective in metal binding and target site recognition. J. Mol. Biol. 281:1998;17-29.
    • (1998) J. Mol. Biol. , vol.281 , pp. 17-29
    • Hagan, N.F.P.1    Vincent, S.D.2    Ingleston, S.M.3    Sharples, G.J.4    Bennett, R.J.5    West, S.C.6    Lloyd, R.G.7
  • 15
    • 0026482604 scopus 로고
    • Escherichia coli RuvA and RuvB proteins specifically interact with Holliday junctions and promote branch migration
    • Iwasaki H., Takahagi M., Nakata A., Shinagawa H. Escherichia coli RuvA and RuvB proteins specifically interact with Holliday junctions and promote branch migration. Genes Dev. 6:1992;2214-2220.
    • (1992) Genes Dev. , vol.6 , pp. 2214-2220
    • Iwasaki, H.1    Takahagi, M.2    Nakata, A.3    Shinagawa, H.4
  • 18
    • 0029871788 scopus 로고    scopus 로고
    • Holliday junction resolvases encoded by homologous rusA genes in Escherichia coli K-12 and phage 82
    • Mahdi A. A., Sharples G. J., Mandal T. N., Lloyd R. G. Holliday junction resolvases encoded by homologous rusA genes in Escherichia coli K-12 and phage 82. J. Mol. Biol. 257:1996;561-573.
    • (1996) J. Mol. Biol. , vol.257 , pp. 561-573
    • Mahdi, A.A.1    Sharples, G.J.2    Mandal, T.N.3    Lloyd, R.G.4
  • 19
    • 0027236687 scopus 로고
    • Resolution of Holliday intermediates in recombination and DNA repair: Indirect suppression of ruvA, ruvB andruvC mutations
    • Mandal T. N., Mahdi A. A., Sharples G. J., Lloyd R. G. Resolution of Holliday intermediates in recombination and DNA repair: indirect suppression of ruvA, ruvB andruvC mutations. J. Bacteriol. 175:1993;4325-4334.
    • (1993) J. Bacteriol. , vol.175 , pp. 4325-4334
    • Mandal, T.N.1    Mahdi, A.A.2    Sharples, G.J.3    Lloyd, R.G.4
  • 20
    • 0030852247 scopus 로고    scopus 로고
    • The DNA replication protein PriA and the recombination protein RecG bind D-loops
    • McGlynn P., Al-Deib A. A., Liu J., Marians K. J., Lloyd R. G. The DNA replication protein PriA and the recombination protein RecG bind D-loops. J. Mol. Biol. 270:1997;212-221.
    • (1997) J. Mol. Biol. , vol.270 , pp. 212-221
    • McGlynn, P.1    Al-Deib, A.A.2    Liu, J.3    Marians, K.J.4    Lloyd, R.G.5
  • 21
    • 0028298842 scopus 로고
    • Structure of restriction endonuclease Bam HI and its relationship to Eco RI
    • Newman M., Strzelecka T., Dorner L. F., Schildkraut I., Aggarwal A. K. Structure of restriction endonuclease Bam HI and its relationship to Eco RI. Nature. 368:1994;660-664.
    • (1994) Nature , vol.368 , pp. 660-664
    • Newman, M.1    Strzelecka, T.2    Dorner, L.F.3    Schildkraut, I.4    Aggarwal, A.K.5
  • 22
    • 0025359444 scopus 로고
    • Interaction of a four-way junction in DNA with T4 endonuclease VII
    • Parsons C. A., Kemper B., West S. C. Interaction of a four-way junction in DNA with T4 endonuclease VII. J. Biol. Chem. 265:1990;9285-9289.
    • (1990) J. Biol. Chem. , vol.265 , pp. 9285-9289
    • Parsons, C.A.1    Kemper, B.2    West, S.C.3
  • 23
    • 0026741832 scopus 로고
    • Interaction of E. coli RuvA and RuvB proteins with synthetic Holliday junctions
    • Parsons C. A., Tsaneva I., Lloyd R. G., West S. C. Interaction of E. coli RuvA and RuvB proteins with synthetic Holliday junctions. Proc. Natl Acad. Sci. USA. 89:1992;5452-5456.
    • (1992) Proc. Natl Acad. Sci. USA , vol.89 , pp. 5452-5456
    • Parsons, C.A.1    Tsaneva, I.2    Lloyd, R.G.3    West, S.C.4
  • 24
    • 0030564937 scopus 로고    scopus 로고
    • T4 endonuclease VII selects and alters the structure of the four-way DNA junction: Binding of a resolution-defective mutant enzyme
    • Pohler J. R. G., Giraud-Panis M. E., Lilley D. M. J. T4 endonuclease VII selects and alters the structure of the four-way DNA junction: binding of a resolution-defective mutant enzyme. J. Mol. Biol. 260:1996;678-696.
    • (1996) J. Mol. Biol. , vol.260 , pp. 678-696
    • Pohler, J.R.G.1    Giraud-Panis, M.E.2    Lilley, D.M.J.3
  • 26
    • 0029142820 scopus 로고
    • Identification of four acidic amino acids that constitute the catalytic center of the RuvC Holliday junction resolvase
    • Saito A., Iwasaki H., Ariyoshi M., Morikawa K., Shinagawa H. Identification of four acidic amino acids that constitute the catalytic center of the RuvC Holliday junction resolvase. Proc. Natl Acad. Sci. USA. 92:1995;7470-7474.
    • (1995) Proc. Natl Acad. Sci. USA , vol.92 , pp. 7470-7474
    • Saito, A.1    Iwasaki, H.2    Ariyoshi, M.3    Morikawa, K.4    Shinagawa, H.5
  • 29
    • 0028043346 scopus 로고
    • Genetic recombination in E. coli: RuvC protein cleaves Holliday junctions at resolution hotspots in vitro
    • Shah R., Bennett R. J., West S. C. Genetic recombination in E. coli: RuvC protein cleaves Holliday junctions at resolution hotspots in vitro. Cell. 79:1994;853-864.
    • (1994) Cell , vol.79 , pp. 853-864
    • Shah, R.1    Bennett, R.J.2    West, S.C.3
  • 30
    • 0030936839 scopus 로고    scopus 로고
    • The RuvC protein dimer resolves Holliday junctions by a dual incision mechanism that involves base-specific contacts
    • Shah R., Cosstick R., West S. C. The RuvC protein dimer resolves Holliday junctions by a dual incision mechanism that involves base-specific contacts. EMBO J. 16:1997;1464-1472.
    • (1997) EMBO J. , vol.16 , pp. 1464-1472
    • Shah, R.1    Cosstick, R.2    West, S.C.3
  • 31
    • 0028590083 scopus 로고
    • Processing of intermediates in recombination and DNA repair: Identification of a new endonuclease that specifically cleaves Holliday junctions
    • Sharples G. J., Chan S. C., Mahdi A. A., Whitby M. C., Lloyd R. G. Processing of intermediates in recombination and DNA repair: identification of a new endonuclease that specifically cleaves Holliday junctions. EMBO J. 13:1994;6133-6142.
    • (1994) EMBO J. , vol.13 , pp. 6133-6142
    • Sharples, G.J.1    Chan, S.C.2    Mahdi, A.A.3    Whitby, M.C.4    Lloyd, R.G.5
  • 33
    • 0032518374 scopus 로고    scopus 로고
    • A mechanism for all polymerases
    • Steitz T. A. A mechanism for all polymerases. Nature. 391:1998;231-232.
    • (1998) Nature , vol.391 , pp. 231-232
    • Steitz, T.A.1
  • 34
    • 0025283867 scopus 로고
    • Use of T7 RNA polymerase to direct the expression of cloned genes
    • Studier F. W., Rosenberg A. H., Dunn J. J. Use of T7 RNA polymerase to direct the expression of cloned genes. Methods Enzymol. 185:1991;60-89.
    • (1991) Methods Enzymol. , vol.185 , pp. 60-89
    • Studier, F.W.1    Rosenberg, A.H.2    Dunn, J.J.3
  • 35
    • 0021919826 scopus 로고
    • A bacteriophage T7-RNA polymerase promoter system for controlled exclusive expression of specific genes
    • Tabor S., Richardson C. C. A bacteriophage T7-RNA polymerase promoter system for controlled exclusive expression of specific genes. Proc. Natl Acad. Sci. USA. 82:1985;1074-1078.
    • (1985) Proc. Natl Acad. Sci. USA , vol.82 , pp. 1074-1078
    • Tabor, S.1    Richardson, C.C.2
  • 36
    • 0026444104 scopus 로고
    • Purification and physical properties of the RuvA and RuvB proteins of Escherichia coli
    • Tsaneva I. R., Illing G. T., Lloyd R. G., West S. C. Purification and physical properties of the RuvA and RuvB proteins of Escherichia coli. Mol. Gen. Genet. 235:1992a;1-10.
    • (1992) Mol. Gen. Genet. , vol.235 , pp. 1-10
    • Tsaneva, I.R.1    Illing, G.T.2    Lloyd, R.G.3    West, S.C.4
  • 37
    • 0026633047 scopus 로고
    • ATP-dependent branch migration of Holliday junctions promoted by the RuvA and RuvB proteins of E. coli
    • Tsaneva I. R., Müller B., West S. C. ATP-dependent branch migration of Holliday junctions promoted by the RuvA and RuvB proteins of E. coli. Cell. 69:1992b;1171-1180.
    • (1992) Cell , vol.69 , pp. 1171-1180
    • Tsaneva, I.R.1    Müller, B.2    West, S.C.3
  • 38
    • 0032536901 scopus 로고    scopus 로고
    • Functional interactions between the Holliday junction resolvase and the branch migration motor of Escherichia coli
    • van Gool A. J., Shah R., Mezard C., West S. C. Functional interactions between the Holliday junction resolvase and the branch migration motor of Escherichia coli. EMBO J. 17:1998;1838-1845.
    • (1998) EMBO J. , vol.17 , pp. 1838-1845
    • Van Gool, A.J.1    Shah, R.2    Mezard, C.3    West, S.C.4
  • 39
    • 0031453378 scopus 로고    scopus 로고
    • Processing of recombination intermediates by the RuvABC proteins
    • West S. C. Processing of recombination intermediates by the RuvABC proteins. Annu. Rev. Genet. 31:1997;213-244.
    • (1997) Annu. Rev. Genet. , vol.31 , pp. 213-244
    • West, S.C.1
  • 40
    • 0030596061 scopus 로고    scopus 로고
    • Interactions between RuvA and RuvC at Holliday junctions: Inhibition of junction cleavage and formation of a RuvA-RuvC-DNA complex
    • Whitby M. C., Bolt E. L., Chan S. N., Lloyd R. G. Interactions between RuvA and RuvC at Holliday junctions: inhibition of junction cleavage and formation of a RuvA-RuvC-DNA complex. J. Mol. Biol. 264:1996;878-890.
    • (1996) J. Mol. Biol. , vol.264 , pp. 878-890
    • Whitby, M.C.1    Bolt, E.L.2    Chan, S.N.3    Lloyd, R.G.4
  • 41
    • 0029880444 scopus 로고    scopus 로고
    • The structure-selectivity and sequence-preference of the junction-resolving enzyme CCE1 of Saccharomyces cerevisiae
    • White M. F., Lilley D. M. J. The structure-selectivity and sequence-preference of the junction-resolving enzyme CCE1 of Saccharomyces cerevisiae. J. Mol. Biol. 257:1996;330-341.
    • (1996) J. Mol. Biol. , vol.257 , pp. 330-341
    • White, M.F.1    Lilley, D.M.J.2
  • 42
    • 0031588022 scopus 로고    scopus 로고
    • Recognition and manipulation of branched DNA structure by junction-resolving enzymes
    • White M. F., Giraud-Panis M.-J. E., Pohler J. R. G., Lilley D. M. J. Recognition and manipulation of branched DNA structure by junction-resolving enzymes. J. Mol. Biol. 269:1997;647-664.
    • (1997) J. Mol. Biol. , vol.269 , pp. 647-664
    • White, M.F.1    Giraud-Panis, M.-J.E.2    Pohler, J.R.G.3    Lilley, D.M.J.4
  • 43
    • 0025129937 scopus 로고
    • Structure of ribonuclease H phased at 2 A resolution by MAD analysis of the selenomethionyl protein
    • Yang W., Hendrickson W. A., Crouch R. J., Satow Y. Structure of ribonuclease H phased at 2 A resolution by MAD analysis of the selenomethionyl protein. Science. 249:1990;1398-1405.
    • (1990) Science , vol.249 , pp. 1398-1405
    • Yang, W.1    Hendrickson, W.A.2    Crouch, R.J.3    Satow, Y.4
  • 44
    • 0032575757 scopus 로고    scopus 로고
    • Coordinated actions of RuvABC in Holliday junction processing
    • Zerbib D., Mézard C., George H., West S. C. Coordinated actions of RuvABC in Holliday junction processing. J. Mol. Biol. 281:1998;621-630.
    • (1998) J. Mol. Biol. , vol.281 , pp. 621-630
    • Zerbib, D.1    Mézard, C.2    George, H.3    West, S.C.4


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