Determination of protein secondary structure and solvent accessibility using site-directed fluorescence labeling. Studies of T4 lysozyme using the fluorescent probe monobromobimane

Biochemistry

Volumn 38, Issue 49, 1999, Pages 16383-16393

  Mansoor, Steven E ^a   Mchaourab, Hassane S ^b   Farrens, David L ^a  

^a OREGON HEALTH AND SCIENCE UNIVERSITY   (United States)

^b MEDICAL COLLEGE OF WISCONSIN   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BROMOBIMANE; FLUORESCENT DYE; LYSOZYME; MUTANT PROTEIN; SOLVENT;

AMINO ACID SUBSTITUTION; ANISOTROPY; ARTICLE; CRYSTAL STRUCTURE; ENZYME STRUCTURE; EXCITATION; FLUORESCENCE ANALYSIS; PRIORITY JOURNAL; PROTEIN SECONDARY STRUCTURE; THERMOSTABILITY;

EID: 0033534145     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi991331v     Document Type: Article

References (43)

1. Stryer, L. (1968) Science 162, 526-533.
2. Lakowicz, J. R. (1999) Principles of Fluorescence Spectroscopy, 2nd ed., Plenum Press, New York.
3. Eftink, M. R. (1991) in Protein Structural Determination: Methods of Biochemical Analysis (Suelter, C. H., Ed.) Vol. 35, pp 127-205, John Wiley & Sons, New York.
4. Weber, G. (1997) Methods Enzymol. 278, 1-15.
5. Beechem, J. M. (1997) Methods Enzymol. 278, 24-49.
6. Barry, J. K., and Matthews, K. S. (1997) Biochemistry 36, 15632-15642.
7. Shepard, L. A., Heuck, A. P., Hamman, B. D., Rossjohn, J., Parker, M. W., Ryan, K. R., Johnson, A. E., and Tweten, R. K. (1998) Biochemistry 37, 14563-14574.
8. Jung, K., Jung, H., Wu, J., Prive, G. G., and Kaback, H. R. (1993) Biochemistry 32, 12273-12278.
9. Gasymov, O. K., Abduragimov, A. R., Yusifov, T. N., and Glasgow, B. J. (1997) Biochem. Biophys. Res. Commun. 239, 191-196.
10. Hubbell, W. L., Mchaourab, H. S., Altenbach, C., and Lietzow, M. A. (1996) Structure 4, 779-783.
11. Farrens, D. L., Altenbach, C., Yang, K., Hubbel, W. L., and Khorana, H. G. (1996) Science 274, 768-770.
12. Yang, K., Farrens, D. L., Hubbell, W. L., and Khorana, H. G. (1996) Biochemistry 35, 12464-12469.
13. Poirier, M. A., Xiao, W., Macosko, J. C., Chan, C., Shin, Y.-K., and Bennett, M. K. (1998) Nat. Struct. Biol. 5, 765-769.
14. Perozo, E., Cortes, D. M., and Cuello, L. G. (1998) Nat. Struct. Biol. 5, 459-469.
15. Koteiche, H. A., Berengian, A. R., and Mchaourab, H. S. (1998) Biochemistry 37, 12681-12688.
16. Kosower, E. M., and Kosower, N. S. (1995) Methods Enzymol. 251, 133.
17. Wang, Y., Malenbaum, S. E., Kachel, K., Zhan. H., Collier, R. J., and London, E. (1997) J. Biol. Chem. 272, 25091-25098.
18. Matsumara, M., and Matthews, B. W. (1989) Science 243, 792-794.
19. Ho, S. N., Hunt, H. D., Horton, R. M., Pullen, J. K., and Pease, L. R. (1989) Gene 77, 51-59.
20. Sauer, U. H., Dao-pin, S., and Matthews, B. W. (1992) J. Biol. Chem. 267, 2393-2399.
21. Inoue, H., Nojima, H., and Okayama, H. (1996) Gene 96, 23-28.
22. Tsugita, A., Inouye, M., Terzaghi, E., and Streisinger, G. (1968) J. Biol. Chem. 243, 391-397.
23. Becktel, W. J., and Baase, W. A. (1985) Anal. Biochem. 150, 258-263.
24. Eftink, M. R. (1994) Biophys. J. 66, 482-501.
25. Pace, C. N., and Scholtz, J. M. (1997) in Protein Structure: A Practical Approach (Creighton, T. E., Ed.) Chapter 12, Oxford University Press, New York.
26. Novokhatny, V., Medved, L., Mazar, A., Marcotte, P., Henkin, J., and Ingham, K. (1992) J. Biol. Chem. 267, 3878-3885.
27. Becktel, W. J., and Schellman, J. A. (1987) Biopolymers 26, 1859-1877.
28. Chen, R. (1965) Science 150, 1593-1595.
29. Ware, W. R., Doemeny, L. J., and Nemzek, T. L. (1973) J. Phys. Chem. 77, 2038-2048.
30. Hui, M. H., and Ware, W. R. (1976) J. Am. Chem. Soc. 98, 4712-4717.
31. O'Connor, D., and Phillips, D. (1984) in Time Correlated Single Photon Counting, Academic Press, San Diego, CA.
32. Holzwarth, A. R. (1995) Methods Enzymol. 246, 334-362.
33. Abagyan, R. A., and Totrov, M. M. (1994) J. Mol. Biol. 235, 983-1002.
34. Abagyan, R. A., Totrov, M. M., and Kuznetsov, D. N. (1994) J. Comput. Chem. 15, 488-506.
35. Nicholson, H., Anderson, D. E., Dao-pin, S., and Matthews, B. W. (1991) Biochemistry 30, 9816-9828.
36. Cornette, J. L., Cease, K. B., Margalit, H., Spouge, J. L., Berzofsky, J. A., and DeLisi, C. (1987) J. Mol. Biol. 195, 659-685.
37. Donnelly, D., Overington, J. P., and Blundell, T. L. (1994) Protein Eng. 7, 645-653.
38. Weaver, L. H., and Matthews, B. W. (1987) J. Mol. Biol. 193, 189-199.
39. Kosower, E. M., Giniger, R., Radkowsky, A., Hebel, D., and Shusterman, A. (1986) J. Phys. Chem. 90, 5552-5557.
40. Mchaourab, H. S., Lietzow, M. A., Hideg, K., and Hubbel, W. L. (1996) Biochemistry 35, 7692-7704.
41. Matthews, B. W. (1995) Adv. Protein Chem. 46, 249-278.
42. McLaughlin, M. L., and Barkley, M. D. (1997) Methods Enzymol. 278, 190-202.
43. Chen, Y., Liu, B., Yu, H.-T., and Barkley, M. D. (1996) J. Am. Chem. Soc. 118, 9271-9278.