DNA ligation during excision repair in yeast cell-free extracts is specifically catalyzed by the CDC9 gene product

Biochemistry

Volumn 38, Issue 9, 1999, Pages 2628-2635

  Wu, Xiaohua ^a   Braithwaite, Elena ^a   Wang, Zhigang ^a  

^a UNIVERSITY OF KENTUCKY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA; GENE PRODUCT; POLYDEOXYRIBONUCLEOTIDE SYNTHASE; PROTEIN CDC9; UNCLASSIFIED DRUG;

ARTICLE; CATALYSIS; CELL VIABILITY; ENZYME ACTIVITY; EXCISION REPAIR; GENE DELETION; GENE OVEREXPRESSION; NONHUMAN; PRIORITY JOURNAL; PROTEIN PROTEIN INTERACTION; SACCHAROMYCES CEREVISIAE; TEMPERATURE SENSITIVE MUTANT; THERMAL STIMULATION;

CATALYSIS; DNA LIGASES; DNA REPAIR; DNA, FUNGAL; GENETIC COMPLEMENTATION TEST; NUCLEOTIDES; SACCHAROMYCES CEREVISIAE; SUBCELLULAR FRACTIONS; SUBSTRATE SPECIFICITY;

EID: 0033515044     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi982592s     Document Type: Article

References (72)

1. Wang, Z., Wu, X., and Friedberg, E. C. (1997) J. Biol. Chem. 272, 24064-24071.
2. Dianov, G., and Lindahl, T. (1994) Curr. Biol. 4, 1069-1076.
3. Matsumoto, Y., Kim, K., and Bogenhagen, D. F. (1994) Mol. Cell. Biol. 14, 6187-6197.
4. Frosina, G., Fortini, P., Rossi, O., Carrozzino, F., Raspaglio, G., Cox, L. S., Lane, D. P., Abbondandolo, A., and Dogliotti, E. (1996) J. Biol. Chem. 271, 9573-9578.
5. Lindahl, T., Karran, P., and Wood, R. D. (1997) Curr. Opin. Genet. Dev. 7, 158-169.
6. Klungland, A., and Lindahl, T. (1997) EMBO J. 16, 3341-3348.
7. Matsumoto, Y., and Kim, K. (1995) Science 269, 699-702.
8. Dianov, G., Price, A., and Lindahl, T. (1992) Mol. Cell. Biol. 12, 1605-1612.
9. Singhal, R. K., Prasad, R., and Wilson, S. H. (1995) J. Biol. Chem. 270, 949-957.
10. Kubota, Y., Nash, R. A., Klungland, A., Schar, P., Barnes, D. E., and Lindahl, T. (1996) EMBO J. 15, 6662-6670.
11. Nicholl, I. D., Nealon, K., and Kenny, M. K. (1997) Biochemistry 36, 7557-7566.
12. Fortini, P., Pascucci, B., Parlanti, E., Sobol, R. W., Wilson, S. H., and Dogliotti, E. (1998) Biochemistry 37, 3575-3580.
13. Nealon, K., Nicholl, I. D., and Kenny, M. K. (1996) Nucleic Acids Res. 24, 3763-3770.
14. DeMott, M. S., Shen, B., Park, M. S., Bambara, R. A., and Zigman, S. (1996) J. Biol. Chem. 271, 30068-30076.
15. Harrington, J. J., and Lieber, M. R. (1994) Genes Dev. 8, 1344-1355.
16. Biswas, E. E., Zhu, F. X., and Biswas, S. B. (1997) Biochemistry 36, 5955-5962.
17. Wu, X., and Wang, Z. (1999) Nucleic Acids Res. (in press).
18. Kim, K., Biade, S., and Matsumoto, Y. (1998) J. Biol. Chem. 273, 8842-8848.
19. Shimizu, K., Santocanale, C., Ropp, P. A., Longhese, M. P., Plevani, P., Lucchini, G., and Sugino, A. (1993) J. Biol. Chem. 268, 27148-27153.
20. Prasad, R., Widen, S. G., Singhal, R. K., Watkins, J., Prakash, L., and Wilson, S. H. (1993) Nucleic Acids Res. 21, 5301-5307.
21. Wang, Z., Wu, X., and Friedberg, E. C. (1993) Mol. Cell. Biol. 13, 1051-1058.
22. Girard, P. M., and Boiteux, S. (1997) Biochimie 79, 559-566.
23. You, H. J., Swanson, R. L., and Doetsch, P. W. (1998) Biochemistry 37, 6033-6040.
24. Bjoras, M., Luna, L., Johnsen, B., Hoff, E., Haug, T., Rognes, T., and Seeberg, E. (1997) EMBO J. 16, 6314-6322.
25. Sancar, A. (1995) J. Biol. Chem. 270, 15915-15918.
26. Friedberg, E. C. (1996) Annu. Rev. Biochem. 65, 1-28.
27. Wood, R. D. (1997) J. Biol. Chem. 272, 23465-23468.
28. van Houten, B. (1990) Microbiol. Rev. 54, 18-51.
29. Guzder, S. N., Habraken, Y., Sung, P., Prakash, L., and Prakash, S. (1995) J. Biol. Chem. 270, 12973-12976.
30. Mu, D., Park, C.-H., Matsunaga, T., Hsu, D. S., Reardon, J. T., and Sancar, A. (1995) J. Biol. Chem. 270, 2415-2418.
31. Aboussekhra, A., Biggerstaff, M., Shivji, M. K. K., Vilpo, J. A., Moncollin, V., Podust, V. N., Protic, M., Hubscher, U., Egly, J.-M., and Wood, R. D. (1995) Cell 80, 859-868.
32. Verhage, R. A., van Gool, A. J., de Groot, N., Hoeijmakers, J. H., van de Putte, P., and Brouwer, J. (1996) Mol. Cell. Biol. 16, 496-502.
33. Wang, Z., Wei, S., Reed, S. H., Wu, X., Svejstrup, J. Q., Feaver, W. J., Kornberg, R. D., and Friedberg, E. C. (1997) Mol. Cell. Biol. 17, 635-643.
34. Guzder, S. N., Sung, P., Prakash, L., and Prakash, S. (1997) J. Biol. Chem. 272, 21665-21668.
35. Tomkinson, A. E., Roberts, E., Daly, G., Totty, N. F., and Lindahl, T. (1991) J. Biol. Chem. 266, 21728-21735.
36. Wei, Y.-F., Robins, P., Carter, K., Caldecott, K., Pappin, D. J. C., Yu, G.-L., Wang, R.-P., Shell, B. K., Nash, R. A., Schar, P., Barnes, D. E., Haseltine, W. A., and Lindahl, T. (1995) Mol. Cell. Biol. 15, 3206-3216.
37. Robins, P., and Lindahl, T. (1996) J. Biol. Chem. 271, 24257-24261.
38. Barnes, D. E., Johnston, L. H., Kodama, K., Tomkinson, A. E., Lasko, D. D., and Lindahl, T. (1990) Proc. Natl. Acad. Sci. U.S.A. 87, 6679-6683.
39. Petrini, J. H. J., Xiao, Y., and Weaver, D. T. (1995) Mol. Cell. Biol. 15, 4303-4308.
40. Waga, S., Bauer, G., and Stillman, B. (1994) J. Biol. Chem. 269, 10923-10934.
41. Mackenney, V. J., Barnes, D. E., and Lindahl, T. (1997) J. Biol. Chem. 272, 11550-11556.
42. Prasad, R., Singhal, R. K., Srivastava, D. K., Molina, J. T., Tomkinson, A. E., and Wilson, S. H. (1996) J. Biol. Chem. 271, 16000-16007.
43. Cappelli, E., Taylor, R., Cevasco, M., Abbondandolo, A., Caldecott, K., and Frosina, G. (1997) J. Biol. Chem. 272, 23970-23975.
44. Chen, J., Tomkinson, A. E., Ramos, W., Mackey, Z. B., Danehower, S., Walter, C. A., Schultz, R. A., Besterman, J. M., and Husain, I. (1995) Mol. Cell. Biol. 15, 5412-5422.
45. Mackey, Z. B., Ramos, W., Levin, D. S., Walter, C. A., McCarrey, J. R., and Tomkinson, A. E. (1997) Mol. Cell. Biol. 17, 989-998.
46. Grawunder, U., Zimmer, D., Fugmann, S., Schwarz, K., and Lieber, M. R. (1998) Mol. Cell. 2, 477-484.
47. Barker, D. G., White, J. H. M., and Johnston, L. H. (1985) Nucleic Acids Res. 13, 8323-8338.
48. Ramos, W., Tappe, N., Talamantez, J., Friedberg, E. C., and Tomkinson, A. E. (1997) Nucleic Acids Res. 25, 1485-1492.
49. Schar, P., Herrmann, G., Daly, G., and Lindahl, T. (1997) Genes Dev. 11, 1912-1924.
50. Teo, S. H., and Jackson, S. P. (1997) EMBO J. 16, 4788-4795.
51. Wilson, T. E., Grawunder, U., and Lieber, M. R. (1997) Nature 388, 495-498.
52. Johnston, L. H., and Nasmyth, K. A. (1978) Nature 274, 891-893.
53. Johnston, L. H. (1983) Mol. Gen. Genet. 190, 315-317.
54. Johnston, L. H. (1979) Mol. Gen. Genet. 170, 89-92.
55. Baranowska, H., Swietlinska, Z., Zaborowska, D., and Zuk, J. (1982) Acta Microbiol. Pol. 31, 119-128.
56. Moore, C. W. (1982) J. Bacteriol. 150, 1227-1233.
57. Moore, C. W. (1982) J. Bacteriol. 151, 1617-1620.
58. Yoon, H., Miller, S. P., Pabich, E. K., and Donahue, T. F. (1992) Genes Dev. 6, 2463-2477.
59. Wang, Z., Wu, X., and Friedberg, E. C. (1992) Biochemistry 31, 3694-3702.
60. Wang, Z., Buratowski, S., Svejstrup, J. Q., Feaver, W. J., Wu, X., Kornberg, R. D., Donahue, T. F., and Friedberg, E. C. (1995) Mol. Cell. Biol. 15, 2288-2293.
61. Budd, M. E., and Campbell, J. L. (1995) Mol. Cell. Biol. 15, 2173-2179.
62. Tomkinson, A. E., Tappe, N. J., and Friedberg, E. C. (1992) Biochemistry 31, 11762-11771.
63. Wang, Z., Wu, X., and Friedberg, E. C. (1995) Methods 7, 177-186.
64. Wang, Z., Wu, X., and Friedberg, E. C. (1993) Proc. Natl. Acad. Sci. U.S.A. 90, 4907-4911.
65. Wang, Z., Wu, X., and Friedberg, E. C. (1996) Mutat. Res. 364, 33-41.
66. Gietz, R. D., and Sugino, A. (1988) Gene 74, 527-534.
67. Herrmann, G., Lindahl, T., and Schar, P. (1998) EMBO J. 17, 4188-4198.
68. Augeri, L., Lee, Y. M., Barton, A. B., and Doetsch, P. W. (1997) Biochemistry 36, 721-729.
69. Levin, D. S., Bai, W., Yao, N., O'Donnell, M., and Tomkinson, A. E. (1997) Proc. Natl. Acad. Sci. U.S.A. 94, 12863-12868.
70. Svejstrup, J. Q., Wang, Z., Feaver, W. J., Wu, X., Bushnell, D. A., Donahue, T. F., Friedberg, E. C., and Kornberg, R. D. (1995) Cell 80, 21-28.
71. Rodriguez, K., Talamantez, J., Huang, W., Reed, S. H., Wang, Z., Chen, L., Feaver, W. J., Friedberg, E. C., and Tomkinson, A. E. (1998) J. Biol. Chem. 273, 34180-34189.
72. Grawunder, U., Wilm, M., Wu, X., Kulesza, P., Wilson, T. E., Mann, M., and Lieber, M. R. (1997) Nature 388, 492-495.