메뉴 건너뛰기




Volumn 264, Issue 3, 1996, Pages 472-483

The donor substrate site within the peptidyl transferase loop of 23 S rRNA and its putative interactions with the CCA-end of N-blocked Aminoacyl-tRNA(Phe)

Author keywords

Clindamycin; Donor substrate site; Peptidyl transferase; rRNA mutants; tRNA rRNA interaction

Indexed keywords

AMINOACYL TRANSFER RNA; PEPTIDYLTRANSFERASE; RNA 23S;

EID: 0030573006     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1006/jmbi.1996.0655     Document Type: Article
Times cited : (33)

References (53)
  • 1
    • 0027438034 scopus 로고
    • Four newly located pseudouridylate residues in E. coli 23 S rRNA are all at the peptidyltransferase center: Analysis by the application of a new sequencing technique
    • Bakin, A. & Ofengand, J. (1993). Four newly located pseudouridylate residues in E. coli 23 S rRNA are all at the peptidyltransferase center: analysis by the application of a new sequencing technique. Biochemistry, 32, 9754-9762.
    • (1993) Biochemistry , vol.32 , pp. 9754-9762
    • Bakin, A.1    Ofengand, J.2
  • 2
    • 0014422075 scopus 로고
    • Translocation in protein synthesis: A hybrid structure model
    • Bretscher, M. S. (1968). Translocation in protein synthesis: a hybrid structure model. Nature, 218, 675-677.
    • (1968) Nature , vol.218 , pp. 675-677
    • Bretscher, M.S.1
  • 3
    • 0027519205 scopus 로고
    • Clustering of modified nucleotides at the functional center of bacterial rRNA
    • Brimacombe, R., Mitchell, P., Osswald, M., Stade, K. & Bochkariov, D. (1993). Clustering of modified nucleotides at the functional center of bacterial rRNA. FASEB J. 7, 161-167.
    • (1993) FASEB J. , vol.7 , pp. 161-167
    • Brimacombe, R.1    Mitchell, P.2    Osswald, M.3    Stade, K.4    Bochkariov, D.5
  • 4
    • 0016763961 scopus 로고
    • Effect of cytidine-5′-monophosphate on peptidyl transferase activity
    • Cerná, J. (1975). Effect of cytidine-5′-monophosphate on peptidyl transferase activity. FEBS Letters, 58, 94-98.
    • (1975) FEBS Letters , vol.58 , pp. 94-98
    • Cerná, J.1
  • 6
    • 0016308742 scopus 로고
    • A contribution to the studies on donor site of peptidyl transferase with acylaminoacyl-nucleoside-5′-monophosphates
    • Cerná, J., Rychlík, I., Krayevsky, A. A. & Gottikh, B. P. (1974). A contribution to the studies on donor site of peptidyl transferase with acylaminoacyl-nucleoside-5′-monophosphates. Acta Biol. Med. Germ. 33, 877-883.
    • (1974) Acta Biol. Med. Germ. , vol.33 , pp. 877-883
    • Cerná, J.1    Rychlík, I.2    Krayevsky, A.A.3    Gottikh, B.P.4
  • 8
    • 0026601409 scopus 로고
    • Functional interactions within 23 S rRNA involving the peptidyl transferase center
    • Douthwaite, S. (1992) Functional interactions within 23 S rRNA involving the peptidyl transferase center. J. Bacteriol. 174, 1333-1338.
    • (1992) J. Bacteriol. , vol.174 , pp. 1333-1338
    • Douthwaite, S.1
  • 9
    • 0020522235 scopus 로고
    • Phe in the free state, in the ternary complex and in the ribosomal A and P sites by chemical probing
    • Phe in the free state, in the ternary complex and in the ribosomal A and P sites by chemical probing. Eur. J. Biochem. 131, 261-269.
    • (1983) Eur. J. Biochem. , vol.131 , pp. 261-269
    • Douthwaite, S.1    Garrett, R.A.2    Wagner, R.3
  • 10
    • 0002476512 scopus 로고
    • Structural map of 23 S rRNA
    • Hill, W., Dahlberg, A., Garrett, R. A., Moore, P., Schlessinger, D. & Warner, J., eds, American Society Microbiology, Washington, DC
    • Egebjerg, J., Larsen, N. & Garrett, R. A. (1990). Structural map of 23 S rRNA. In The Ribosome: Structure, Function and Evolution (Hill, W., Dahlberg, A., Garrett, R. A., Moore, P., Schlessinger, D. & Warner, J., eds), pp. 168-179, American Society Microbiology, Washington, DC.
    • (1990) The Ribosome: Structure, Function and Evolution , pp. 168-179
    • Egebjerg, J.1    Larsen, N.2    Garrett, R.A.3
  • 12
    • 0014020890 scopus 로고
    • The behaviour of acetylphenylalanyl soluble RNA in polyphenylalanine synthesis
    • Haenni, A. L. & Chapeville, F. (1966). The behaviour of acetylphenylalanyl soluble RNA in polyphenylalanine synthesis. Biochim. Biophys. Acta, 114, 135-148.
    • (1966) Biochim. Biophys. Acta , vol.114 , pp. 135-148
    • Haenni, A.L.1    Chapeville, F.2
  • 13
    • 0030904329 scopus 로고    scopus 로고
    • Movement of the 3′-end of tRNA through the peptidyl transferase centre and its inhibition by antibiotics
    • In the press
    • Kirillov, S., Porse, B. T., Vester, B., Woolley, P. & Garrett, R. A. (1997). Movement of the 3′-end of tRNA through the peptidyl transferase centre and its inhibition by antibiotics. FEBS Letters. In the press.
    • (1997) FEBS Letters
    • Kirillov, S.1    Porse, B.T.2    Vester, B.3    Woolley, P.4    Garrett, R.A.5
  • 14
    • 0027973546 scopus 로고
    • Base-pairing between E. coli RNase P RNA and its substrate
    • Kirsebom, L. A. & Svard, S. G. (1994). Base-pairing between E. coli RNase P RNA and its substrate. EMBO J. 1354, 4870-4876.
    • (1994) EMBO J. , vol.1354 , pp. 4870-4876
    • Kirsebom, L.A.1    Svard, S.G.2
  • 15
    • 0029026068 scopus 로고
    • Posttranscriptional modification of the central loop of domain V in E. coli 23 S rRNA
    • Kowalak, J. A., Bruenger, E. & McCloskey, J. A. (1995). Posttranscriptional modification of the central loop of domain V in E. coli 23 S rRNA. J. Biol. Chem. 270, 17758-17764.
    • (1995) J. Biol. Chem. , vol.270 , pp. 17758-17764
    • Kowalak, J.A.1    Bruenger, E.2    McCloskey, J.A.3
  • 17
    • 0017231416 scopus 로고
    • The study of the stimulating mechanism of the peptidyl donor activity of 2′(3′)-O-(N-formylmethionyl)-adenosine-5′-phosphate in peptidyl transferase of the E. coli ribosome
    • Krayevsky, A. A., Victorova, L. S., Kotusov, V. V., Kukhanova, M. K., Treboganov, A. D., Tarussova, N. B. & Gottikh, B. P. (1976). The study of the stimulating mechanism of the peptidyl donor activity of 2′(3′)-O-(N-formylmethionyl)-adenosine-5′-phosphate in peptidyl transferase of the E. coli ribosome. FEBS Letters, 62, 101-104.
    • (1976) FEBS Letters , vol.62 , pp. 101-104
    • Krayevsky, A.A.1    Victorova, L.S.2    Kotusov, V.V.3    Kukhanova, M.K.4    Treboganov, A.D.5    Tarussova, N.B.6    Gottikh, B.P.7
  • 18
    • 0023613953 scopus 로고
    • Rapid and efficient site-specific mutagenesis without phenotypic selection
    • Kunkel, T. A., Roberts, J. D. & Zakour, R. A. (1987). Rapid and efficient site-specific mutagenesis without phenotypic selection. Methods Enzymol. 154, 367-382.
    • (1987) Methods Enzymol. , vol.154 , pp. 367-382
    • Kunkel, T.A.1    Roberts, J.D.2    Zakour, R.A.3
  • 19
    • 0022147039 scopus 로고
    • Constraints on the accuracy of messenger RNA movement
    • Kurland, C. G. & Ehrenberg M. (1985). Constraints on the accuracy of messenger RNA movement. Quart. Rev. Biophys. 18, 423-450.
    • (1985) Quart. Rev. Biophys. , vol.18 , pp. 423-450
    • Kurland, C.G.1    Ehrenberg, M.2
  • 20
    • 0029074526 scopus 로고
    • Role of the highly conserved region of DIV of 23 S-like rRNA in subunit-subunit interactions at the peptidyl transferase centre
    • Leviev, I., Levieva, S. & Garrett, R. A. (1995). Role of the highly conserved region of DIV of 23 S-like rRNA in subunit-subunit interactions at the peptidyl transferase centre. Nucl. Acids Res. 23, 1512-1517.
    • (1995) Nucl. Acids Res. , Issue.23 , pp. 1512-1517
    • Leviev, I.1    Levieva, S.2    Garrett, R.A.3
  • 21
    • 0028292389 scopus 로고
    • The importance of conserved nucleotides of 23 S rRNA and tRNA in ribosome catalyzed peptide bond formation
    • Lieberman, K. R. & Dahlberg, A. E. (1994). The importance of conserved nucleotides of 23 S rRNA and tRNA in ribosome catalyzed peptide bond formation. J. Biol. Chem. 269, 16163-16169.
    • (1994) J. Biol. Chem. , vol.269 , pp. 16163-16169
    • Lieberman, K.R.1    Dahlberg, A.E.2
  • 23
    • 0028033045 scopus 로고
    • Functional tRNAs with modifications in the 3′-CCA end: Differential effects on aminoacylation and polypeptide synthesis
    • Liu, M. & Horowitz, J. (1994). Functional tRNAs with modifications in the 3′-CCA end: differential effects on aminoacylation and polypeptide synthesis. Proc. Natl Acad. Sci. USA, 91, 10389-10393.
    • (1994) Proc. Natl Acad. Sci. USA , vol.91 , pp. 10389-10393
    • Liu, M.1    Horowitz, J.2
  • 26
    • 0024819449 scopus 로고
    • Synthesis of small RNAs using T7 RNA polymerase
    • Milligan, J. F. & Uhlenbeck, O. C. (1989). Synthesis of small RNAs using T7 RNA polymerase. Methods Enzymol. 180, 51-62.
    • (1989) Methods Enzymol. , vol.180 , pp. 51-62
    • Milligan, J.F.1    Uhlenbeck, O.C.2
  • 27
    • 0023604799 scopus 로고
    • Chloramphenicol, erythromycin, carbomycin, and vernamycin B protect overlapping sites in the peptidyl transferase region of 23 S rRNA
    • Moazed, D. & Noller, H. F. (1987). Chloramphenicol, erythromycin, carbomycin, and vernamycin B protect overlapping sites in the peptidyl transferase region of 23 S rRNA. Biochimie, 69, 879-884.
    • (1987) Biochimie , vol.69 , pp. 879-884
    • Moazed, D.1    Noller, H.F.2
  • 28
    • 0024458904 scopus 로고
    • Intermediate states in the movement of transfer RNA in the ribosome
    • Moazed D. & Noller, H. F. (1989a). Intermediate states in the movement of transfer RNA in the ribosome. Nature, 342, 142-148.
    • (1989) Nature , vol.342 , pp. 142-148
    • Moazed, D.1    Noller, H.F.2
  • 29
    • 0024334898 scopus 로고
    • Interaction of tRNA with 23 S rRNA in the ribosomal A, P, and E sites
    • Moazed D. & Noller, H. F. (1989b). Interaction of tRNA with 23 S rRNA in the ribosomal A, P, and E sites. Cell, 57, 585-597.
    • (1989) Cell , vol.57 , pp. 585-597
    • Moazed, D.1    Noller, H.F.2
  • 30
    • 0014219466 scopus 로고
    • Catalysis of peptide bond formation by 50 S ribosomal subunits from E. coli
    • Monro, R. E. (1967). Catalysis of peptide bond formation by 50 S ribosomal subunits from E. coli. J. Mol. Biol. 26, 147-151.
    • (1967) J. Mol. Biol. , vol.26 , pp. 147-151
    • Monro, R.E.1
  • 31
    • 0011289433 scopus 로고
    • Ribosomal peptidyl transferase: The fragment reaction
    • Monro, R. E. (1971). Ribosomal peptidyl transferase: the fragment reaction. Methods Enzymol. 20, 472-481.
    • (1971) Methods Enzymol. , vol.20 , pp. 472-481
    • Monro, R.E.1
  • 34
    • 0025679294 scopus 로고
    • Movement of tRNA but not the nascent peptide during peptide bond formation on ribosomes
    • Odom, O. W., Picking, W. D. & Hardesty, B. (1990). Movement of tRNA but not the nascent peptide during peptide bond formation on ribosomes. Biochemistry, 29, 10734-10744.
    • (1990) Biochemistry , vol.29 , pp. 10734-10744
    • Odom, O.W.1    Picking, W.D.2    Hardesty, B.3
  • 35
    • 0008683619 scopus 로고
    • Phe and its fragments with E. coli ribosomes. II. Location of P-site-binding tRNA centers
    • Phe and its fragments with E. coli ribosomes. II. Location of P-site-binding tRNA centers. Mol. Biol. 27, 507-510.
    • (1993) Mol. Biol. , vol.27 , pp. 507-510
    • Parfenov, D.V.1    Saminskii, E.M.2
  • 36
    • 0019558180 scopus 로고
    • Chemical probing of the tRNA-ribosome complex
    • Peattie, D. A. & Herr, W. (1981). Chemical probing of the tRNA-ribosome complex. Proc. Natl Acad. Sci. USA, 78, 2273-2277.
    • (1981) Proc. Natl Acad. Sci. USA , vol.78 , pp. 2273-2277
    • Peattie, D.A.1    Herr, W.2
  • 37
    • 0026482716 scopus 로고
    • Determination of recognition nucleotides for E. coli phenylalanyl-tRNA synthetase
    • Peterson, E. T. & Uhlenbeck, O. C. (1992). Determination of recognition nucleotides for E. coli phenylalanyl-tRNA synthetase. Biochemistry, 31, 10380-10389.
    • (1992) Biochemistry , vol.31 , pp. 10380-10389
    • Peterson, E.T.1    Uhlenbeck, O.C.2
  • 38
    • 0029011424 scopus 로고
    • Mapping important nucleotides in the peptidyl transferase centre of 23 S rRNA using a random mutagenesis approach
    • Porse, B. T. & Garrett, R. A. (1995). Mapping important nucleotides in the peptidyl transferase centre of 23 S rRNA using a random mutagenesis approach. J. Mol. Biol. 249, 1-10.
    • (1995) J. Mol. Biol. , vol.249 , pp. 1-10
    • Porse, B.T.1    Garrett, R.A.2
  • 39
    • 0029403050 scopus 로고
    • Antibiotic inhibition of the movement of tRNA substrates through a peptidyl transferase cavity
    • Porse, B. T., Rodriguez-Fonseca, C., Leviev, I. & Garrett, R. A. (1995). Antibiotic inhibition of the movement of tRNA substrates through a peptidyl transferase cavity. Biochem. Cell Biol. 73, 877-885.
    • (1995) Biochem. Cell Biol. , vol.73 , pp. 877-885
    • Porse, B.T.1    Rodriguez-Fonseca, C.2    Leviev, I.3    Garrett, R.A.4
  • 40
    • 0025012472 scopus 로고
    • Dominant lethal mutations in a conserved loop in 16 S rRNA
    • Powers, T. & Noller, H. F. (1990). Dominant lethal mutations in a conserved loop in 16 S rRNA. Proc. Natl Acad. Sci. USA, 87, 1042-1046.
    • (1990) Proc. Natl Acad. Sci. USA , vol.87 , pp. 1042-1046
    • Powers, T.1    Noller, H.F.2
  • 41
    • 0020541811 scopus 로고
    • Improved plasmid vectors with a thermoinducible expression and temperature-regulated runaway replication
    • Remaut, E., Tsao, H. & Fiers, W. (1983). Improved plasmid vectors with a thermoinducible expression and temperature-regulated runaway replication. Gene, 22, 103-113.
    • (1983) Gene , vol.22 , pp. 103-113
    • Remaut, E.1    Tsao, H.2    Fiers, W.3
  • 42
    • 0028924641 scopus 로고
    • Fine structure of the peptidyl transferase centre on 23 S-like rRNAs deduced from chemical probing of antibiotic-ribosome complexes
    • Rodriguez-Fonseca, C., Amils, R. & Garrett, R. A. (1995). Fine structure of the peptidyl transferase centre on 23 S-like rRNAs deduced from chemical probing of antibiotic-ribosome complexes. J. Mol. Biol. 247, 224-235.
    • (1995) J. Mol. Biol. , vol.247 , pp. 224-235
    • Rodriguez-Fonseca, C.1    Amils, R.2    Garrett, R.A.3
  • 43
    • 0026771498 scopus 로고
    • Novel mutants of 23 S RNA: Characterization of functional properties
    • Saarma, U. & Remme, J. (1992). Novel mutants of 23 S RNA: characterization of functional properties. Nucl. Acids Res. 20, 3147-3152.
    • (1992) Nucl. Acids Res. , vol.20 , pp. 3147-3152
    • Saarma, U.1    Remme, J.2
  • 44
    • 0029085929 scopus 로고
    • A base-pair between tRNA and 23 S rRNA in the peptidyl transferase centre of the ribosomes
    • Samaha, R. R., Green, R. & Noller, H. F. (1995). A base-pair between tRNA and 23 S rRNA in the peptidyl transferase centre of the ribosomes. Nature, 377, 309-314.
    • (1995) Nature , vol.377 , pp. 309-314
    • Samaha, R.R.1    Green, R.2    Noller, H.F.3
  • 46
    • 85030287718 scopus 로고
    • Puromycin reaction at the ribosomal A site
    • Leningrad Nuclear Physics Institute, preprint no. 1495
    • Semenkov, Y. P., Shapkina, T. G. & Kirillov, S. V. (1989). Puromycin reaction at the ribosomal A site. Acad. Sci. USSR. Leningrad Nuclear Physics Institute, preprint no. 1495.
    • (1989) Acad. Sci. USSR
    • Semenkov, Y.P.1    Shapkina, T.G.2    Kirillov, S.V.3
  • 48
    • 0024271795 scopus 로고
    • Antibiotic resistance mutations in rRNA genes of E. coli
    • Sigmund, C. D., Ettayebi, M., Borden, A. & Morgan, E. A. (1988). Antibiotic resistance mutations in rRNA genes of E. coli. Methods Enzymol. 164, 673-690.
    • (1988) Methods Enzymol. , vol.164 , pp. 673-690
    • Sigmund, C.D.1    Ettayebi, M.2    Borden, A.3    Morgan, E.A.4
  • 49
    • 0000708390 scopus 로고
    • The use of puromycin analogs and related compounds to probe the active center of peptidyl transferase on E. coli ribosomes
    • Symons, R. H., Harris, R. J., Greenwell, P., Eckermann, D. J. & Vanin, E. F. (1978). The use of puromycin analogs and related compounds to probe the active center of peptidyl transferase on E. coli ribosomes. In Bioinorg. Chem. 4(Suppl.), 409-436.
    • (1978) Bioinorg. Chem. , vol.4 , Issue.SUPPL. , pp. 409-436
    • Symons, R.H.1    Harris, R.J.2    Greenwell, P.3    Eckermann, D.J.4    Vanin, E.F.5
  • 50
    • 0028054033 scopus 로고
    • The role of the CCA sequence of tRNA in the peptidyl transfer reaction
    • Tamura, K. (1994). The role of the CCA sequence of tRNA in the peptidyl transfer reaction. FEBS Letters, 353, 173-176.
    • (1994) FEBS Letters , vol.353 , pp. 173-176
    • Tamura, K.1
  • 52
    • 0023587832 scopus 로고
    • A plasmid-coded and site-directed mutation in Escherichia coli 23 S RNA that confers resistance to erythromycin: Implications for the mechanism of action of erythromycin
    • Vester, B. & Garrett, R. A. (1987). A plasmid-coded and site-directed mutation in Escherichia coli 23 S RNA that confers resistance to erythromycin: implications for the mechanism of action of erythromycin. Biochimie, 69, 891-900.
    • (1987) Biochimie , vol.69 , pp. 891-900
    • Vester, B.1    Garrett, R.A.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.