-
1
-
-
0029039263
-
Improved dating of the human/ chimpanzee separation in the mitochondrial DNA tree: Heterogeneity among amino acid sites
-
Adachi J, Hasegawa M (1995) Improved dating of the human/ chimpanzee separation in the mitochondrial DNA tree: heterogeneity among amino acid sites. J Mol Evol 40:622-628
-
(1995)
J Mol Evol
, vol.40
, pp. 622-628
-
-
Adachi, J.1
Hasegawa, M.2
-
3
-
-
0027493250
-
HY4 gene of A. thaliana encodes a protein with characteristics of a blue-light photoreceptor
-
Ahmad M, Cashmore AR (1993) HY4 gene of A. thaliana encodes a protein with characteristics of a blue-light photoreceptor. Nature 366:162-166
-
(1993)
Nature
, vol.366
, pp. 162-166
-
-
Ahmad, M.1
Cashmore, A.R.2
-
4
-
-
0016355478
-
A new look at the statistical model identification
-
Akaike H (1974) A new look at the statistical model identification. IEEE Trans Autom Contr 19:716-723
-
(1974)
IEEE Trans Autom Contr
, vol.19
, pp. 716-723
-
-
Akaike, H.1
-
5
-
-
0027673186
-
A plant gene for photolyase: An enzyme catalyzing the repair of UV-light-induced DNA damage
-
Batschauer A (1993) A plant gene for photolyase: an enzyme catalyzing the repair of UV-light-induced DNA damage. Plant J 4:705-709
-
(1993)
Plant J
, vol.4
, pp. 705-709
-
-
Batschauer, A.1
-
6
-
-
0024049252
-
UV mutagenic photoproducts in Escherichia coli and human cells: A molecular genetics perspective on human skin cancer
-
Brash DE (1988) UV mutagenic photoproducts in Escherichia coli and human cells: a molecular genetics perspective on human skin cancer. Photochem Photobiol 48:59-66
-
(1988)
Photochem Photobiol
, vol.48
, pp. 59-66
-
-
Brash, D.E.1
-
7
-
-
0000228203
-
A model of evolutionary change in proteins
-
Dayhoff MO (ed) National Biomedical Research Foundation, Washington, DC
-
Dayhoff MO, Schwartz RM, Orcutt BC (1978) A model of evolutionary change in proteins. In: Dayhoff MO (ed) Atlas of protein sequence structure. National Biomedical Research Foundation, Washington, DC, p 345
-
(1978)
Atlas of Protein Sequence Structure
, pp. 345
-
-
Dayhoff, M.O.1
Schwartz, R.M.2
Orcutt, B.C.3
-
8
-
-
0019446467
-
Photoreactivating enzyme from Streptomyces griseus - IV. On the nature of the chromophoric cofactor in Streptomyces griseus photoreactivating enzyme
-
Eker APM, Dekker RH, Berends W (1981) Photoreactivating enzyme from Streptomyces griseus - IV. On the nature of the chromophoric cofactor in Streptomyces griseus photoreactivating enzyme. Photochem Photobiol 33:65-72
-
(1981)
Photochem Photobiol
, vol.33
, pp. 65-72
-
-
Eker, A.P.M.1
Dekker, R.H.2
Berends, W.3
-
9
-
-
0025272139
-
DNA photoreactivating enzyme from the cyanobacterium Anacystis nidulans
-
Eker APM, Kooiman P, Hessels JK, Yasui A (1990) DNA photoreactivating enzyme from the cyanobacterium Anacystis nidulans. J Biol Chem 265:8009-8015
-
(1990)
J Biol Chem
, vol.265
, pp. 8009-8015
-
-
Eker, A.P.M.1
Kooiman, P.2
Hessels, J.K.3
Yasui, A.4
-
10
-
-
0028484049
-
DNA photolyase from the fungus Neurospora crassa. Purification, characterization and comparison with other photolyases
-
Eker APM, Yajima H, Yasui A (1994) DNA photolyase from the fungus Neurospora crassa. Purification, characterization and comparison with other photolyases. Photochem Photobiol 60:125-133
-
(1994)
Photochem Photobiol
, vol.60
, pp. 125-133
-
-
Eker, A.P.M.1
Yajima, H.2
Yasui, A.3
-
11
-
-
0019797407
-
Evolutionary trees from DNA sequences: A maximum likelihood approach
-
Felsenstein J (1981) Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17:368-376
-
(1981)
J Mol Evol
, vol.17
, pp. 368-376
-
-
Felsenstein, J.1
-
12
-
-
0000461280
-
Confidence limits on phylogenies: An approach using the bootstrap
-
Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783-791
-
(1985)
Evolution
, vol.39
, pp. 783-791
-
-
Felsenstein, J.1
-
14
-
-
0029901637
-
Inferring phylogenies from protein sequences by parsimony, distance, and likelihood methods
-
Doolittle RF (ed) Academic Press, San Diego
-
Felsenstein J (1996) Inferring phylogenies from protein sequences by parsimony, distance, and likelihood methods. In: Doolittle RF (ed) Methods in enzymology, vol 266. Academic Press, San Diego, p 418
-
(1996)
Methods in Enzymology
, vol.266
, pp. 418
-
-
Felsenstein, J.1
-
15
-
-
0029054227
-
The structure of photolyase: Using photon energy for DNA repair
-
Hearst JE (1995) The structure of photolyase: using photon energy for DNA repair. Science 268:1858-1859
-
(1995)
Science
, vol.268
, pp. 1858-1859
-
-
Hearst, J.E.1
-
16
-
-
0026605537
-
CLUSTAL V: Improved software for multiple sequence alignment
-
Higgins DG, Bleasby AJ, Fuchs R (1991) CLUSTAL V: improved software for multiple sequence alignment. Comput Appl Biosci 8:189-191
-
(1991)
Comput Appl Biosci
, vol.8
, pp. 189-191
-
-
Higgins, D.G.1
Bleasby, A.J.2
Fuchs, R.3
-
17
-
-
0029903498
-
Putative human blue-light photoreceptors hCRY1 and hCRY2 are flavoproteins
-
Hsu DS, Zhao X, Zhao S, Kazantsev A, Wang RP, Todo T, Wei YF, Sancar A (1996) Putative human blue-light photoreceptors hCRY1 and hCRY2 are flavoproteins. Biochemistry 35:13871-13877
-
(1996)
Biochemistry
, vol.35
, pp. 13871-13877
-
-
Hsu, D.S.1
Zhao, X.2
Zhao, S.3
Kazantsev, A.4
Wang, R.P.5
Todo, T.6
Wei, Y.F.7
Sancar, A.8
-
18
-
-
0024358140
-
Evolutionary relationship of archaebacteria, eubacteria, and eukaryotes inferred from phylogenetic trees of duplicated genes
-
Iwabe N, Kuma K, Hasegawa M, Osawa S, Miyata T (1989) Evolutionary relationship of archaebacteria, eubacteria, and eukaryotes inferred from phylogenetic trees of duplicated genes. Proc Natl Acad Sci USA 86:9355-9359
-
(1989)
Proc Natl Acad Sci USA
, vol.86
, pp. 9355-9359
-
-
Iwabe, N.1
Kuma, K.2
Hasegawa, M.3
Osawa, S.4
Miyata, T.5
-
19
-
-
84989762360
-
Photoreactivation of Halobacterium halobium: Action spectrum and role of pigmentation
-
Iwasa T, Tokutomi S, Tokunaga F (1988) Photoreactivation of Halobacterium halobium: action spectrum and role of pigmentation. Photochem Photobiol 47:267-270
-
(1988)
Photochem Photobiol
, vol.47
, pp. 267-270
-
-
Iwasa, T.1
Tokutomi, S.2
Tokunaga, F.3
-
20
-
-
0024121590
-
Identification of the second chromophore of Escherichia coli and yeast DNA photolyases as 5,10-methenyltetrahydrofolate
-
Johnson JL, Hamm-Alvarez S, Payne G, Sancar GB, Rajagopalan KV, Sancar A (1988) Identification of the second chromophore of Escherichia coli and yeast DNA photolyases as 5,10-methenyltetrahydrofolate. Proc Natl Acad Sci USA 85:2046-2050
-
(1988)
Proc Natl Acad Sci USA
, vol.85
, pp. 2046-2050
-
-
Johnson, J.L.1
Hamm-Alvarez, S.2
Payne, G.3
Sancar, G.B.4
Rajagopalan, K.V.5
Sancar, A.6
-
21
-
-
0026691182
-
The rapid generation of mutation data matrices from protein sequences
-
Jones DT, Taylor WR, Thornton JM (1992) The rapid generation of mutation data matrices from protein sequences. Comput Appl Biosci 8:275-282
-
(1992)
Comput Appl Biosci
, vol.8
, pp. 275-282
-
-
Jones, D.T.1
Taylor, W.R.2
Thornton, J.M.3
-
22
-
-
0001249607
-
Transduction of blue-light signals
-
Kaufman LS (1993) Transduction of blue-light signals. Plant Physiol 102:333-337
-
(1993)
Plant Physiol
, vol.102
, pp. 333-337
-
-
Kaufman, L.S.1
-
23
-
-
0024971180
-
Purification and properties of Methanobacterium thermoautotrophicum DNA photolyase
-
Kiener A, Husain I, Sancar A, Walsh C (1989) Purification and properties of Methanobacterium thermoautotrophicum DNA photolyase. J Biol Chem 264:13880-13887
-
(1989)
J Biol Chem
, vol.264
, pp. 13880-13887
-
-
Kiener, A.1
Husain, I.2
Sancar, A.3
Walsh, C.4
-
24
-
-
0026334916
-
Determination of rates and yields of interchromophore (folate → flavin) energy transfer and intermolecular (flavin → DNA) electron transfer in Escherichia coli photolyase by time-resolved fluorescence and absorption spectroscopy
-
Kim S-T, Heelis PF, Okumura T, Hirata Y, Mataga N, Sancar A (1991) Determination of rates and yields of interchromophore (folate → flavin) energy transfer and intermolecular (flavin → DNA) electron transfer in Escherichia coli photolyase by time-resolved fluorescence and absorption spectroscopy. Biochemistry 30:11262-11270
-
(1991)
Biochemistry
, vol.30
, pp. 11262-11270
-
-
Kim, S.-T.1
Heelis, P.F.2
Okumura, T.3
Hirata, Y.4
Mataga, N.5
Sancar, A.6
-
25
-
-
0026495678
-
2 → T〈〉T) kinetics in Anacystis nidulans photolyase
-
2 → T〈〉T) kinetics in Anacystis nidulans photolyase. Biochemistry 31:11244-11248
-
(1992)
Biochemistry
, vol.31
, pp. 11244-11248
-
-
Kim, S.-T.1
Heelis, K.2
Sancar, A.3
-
26
-
-
0030580949
-
Purification and characterization of Drosophila melanogaster photolyase
-
Kim S-T, Malhotra K, Ryo H, Sancar A, Todo T (1996a) Purification and characterization of Drosophila melanogaster photolyase. Mutat Res 363:97-104
-
(1996)
Mutat Res
, vol.363
, pp. 97-104
-
-
Kim, S.-T.1
Malhotra, K.2
Ryo, H.3
Sancar, A.4
Todo, T.5
-
27
-
-
0030111351
-
Purification and partial characterization of (6-4) photoproduct DNA photolyase from Xenopus laevis
-
Kim S-T, Malhotra K, Taylor JS, Sancar A (1996b) Purification and partial characterization of (6-4) photoproduct DNA photolyase from Xenopus laevis. Photochem Photobiol 63:292-295
-
(1996)
Photochem Photobiol
, vol.63
, pp. 292-295
-
-
Kim, S.-T.1
Malhotra, K.2
Taylor, J.S.3
Sancar, A.4
-
28
-
-
0025181359
-
Maximum likelihood inference of protein phylogeny and the origin of chloroplasts
-
Kishino H, Miyata H, Hasegawa M (1990) Maximum likelihood inference of protein phylogeny and the origin of chloroplasts. J Mol Evol 31:151-160
-
(1990)
J Mol Evol
, vol.31
, pp. 151-160
-
-
Kishino, H.1
Miyata, H.2
Hasegawa, M.3
-
29
-
-
0025884907
-
Cloning, sequencing, expression and characterization of DNA photolyase from Salmonella typhimurium
-
Li YF, Sancar A (1991) Cloning, sequencing, expression and characterization of DNA photolyase from Salmonella typhimurium. Nucleic Acids Res 19:4885-4890
-
(1991)
Nucleic Acids Res
, vol.19
, pp. 4885-4890
-
-
Li, Y.F.1
Sancar, A.2
-
30
-
-
84994912146
-
Mutational analysis of blue-light sensing in Arabidopsis
-
Liscum E, Hangarter RP (1994) Mutational analysis of blue-light sensing in Arabidopsis. Plant Cell Environ 17:639-648
-
(1994)
Plant Cell Environ
, vol.17
, pp. 639-648
-
-
Liscum, E.1
Hangarter, R.P.2
-
31
-
-
0012437220
-
-
Ribosomal RNA Database Project, University of Illinois
-
Maciukenas M, McCaughey M (1994) TREETOOL 2.0.2. Ribosomal RNA Database Project, University of Illinois
-
(1994)
TREETOOL 2.0.2
-
-
Maciukenas, M.1
McCaughey, M.2
-
32
-
-
0026755198
-
Roles of FAD and 8-hydroxy-5-deazaflavin chromophores in photoreactivation by Anacystis nidulans DNA photolyase
-
Malhotra K, Kim S-T, Walsh C, Sancar A (1992) Roles of FAD and 8-hydroxy-5-deazaflavin chromophores in photoreactivation by Anacystis nidulans DNA photolyase. J Biol Chem 267:15406-15411
-
(1992)
J Biol Chem
, vol.267
, pp. 15406-15411
-
-
Malhotra, K.1
Kim, S.-T.2
Walsh, C.3
Sancar, A.4
-
33
-
-
0027990435
-
Characterization of a medium wavelength type DNA photolyase: Purification and properties of photolyase from Bacillus firmus
-
Malhotra K, Kim S-T, Sancar A (1994) Characterization of a medium wavelength type DNA photolyase: purification and properties of photolyase from Bacillus firmus. Biochemistry 33:8712-8718
-
(1994)
Biochemistry
, vol.33
, pp. 8712-8718
-
-
Malhotra, K.1
Kim, S.-T.2
Sancar, A.3
-
34
-
-
0029061519
-
Putative blue-light photoreceptors from Arabidopsis thaliana and Sinapsis alba with a high degree of sequence homology to DNA photolyase contain the two photolyase cofactors but lack DNA repair activity
-
Malhotra K, Kim S-T, Batschauer A, Dawut L, Sancar A (1995) Putative blue-light photoreceptors from Arabidopsis thaliana and Sinapsis alba with a high degree of sequence homology to DNA photolyase contain the two photolyase cofactors but lack DNA repair activity. Biochemistry 34:6892-6899
-
(1995)
Biochemistry
, vol.34
, pp. 6892-6899
-
-
Malhotra, K.1
Kim, S.-T.2
Batschauer, A.3
Dawut, L.4
Sancar, A.5
-
36
-
-
0028812143
-
Crystal structure of DNA photolyase from Escherichia coli
-
Park H-W, Kim S-T, Sancar A, Deisenhofer J (1995) Crystal structure of DNA photolyase from Escherichia coli. Science 268:1868-1872
-
(1995)
Science
, vol.268
, pp. 1868-1872
-
-
Park, H.-W.1
Kim, S.-T.2
Sancar, A.3
Deisenhofer, J.4
-
37
-
-
0025357978
-
Reconstruction of Escherichia coli photolyase with flavins and flavin analogues
-
Payne G, Wills M, Walsh C, Sancar A (1990) Reconstruction of Escherichia coli photolyase with flavins and flavin analogues. Biochemistry 29:5706-5711
-
(1990)
Biochemistry
, vol.29
, pp. 5706-5711
-
-
Payne, G.1
Wills, M.2
Walsh, C.3
Sancar, A.4
-
38
-
-
0023375195
-
The neighbor-joining method: A new method for reconstructing phylogenetic trees
-
Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406-425
-
(1987)
Mol Biol Evol
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
39
-
-
0029874444
-
No "end of history" for photolyases
-
Sancar A (1996) No "end of history" for photolyases. Science 272: 48-49
-
(1996)
Science
, vol.272
, pp. 48-49
-
-
Sancar, A.1
-
40
-
-
0023656687
-
Purification of the yeast PHR1 photolyase from an Escherichia coli overproducing strain and characterization of the intrinsic chromophores of the enzyme
-
Sancar GB, Smith FW, Heelis PF (1987) Purification of the yeast PHR1 photolyase from an Escherichia coli overproducing strain and characterization of the intrinsic chromophores of the enzyme. J Biol Chem 262:15457-15465
-
(1987)
J Biol Chem
, vol.262
, pp. 15457-15465
-
-
Sancar, G.B.1
Smith, F.W.2
Heelis, P.F.3
-
41
-
-
0000507749
-
Matrices for detecting distant relationships
-
Dayhoff MO (ed) National Biomedical Research Foundation, Washington, DC
-
Schwartz RM, Dayhoff MO (1978) Matrices for detecting distant relationships. In: Dayhoff MO (ed) Atlas of protein sequence and structure. National Biomedical Research Foundation, Washington, DC, p353
-
(1978)
Atlas of Protein Sequence and Structure
, pp. 353
-
-
Schwartz, R.M.1
Dayhoff, M.O.2
-
43
-
-
0000723716
-
DNA, sunlight and skin cancer
-
Taylor JS (1995) DNA, sunlight and skin cancer. Pure Appl Chem 67:183-190
-
(1995)
Pure Appl Chem
, vol.67
, pp. 183-190
-
-
Taylor, J.S.1
-
44
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673-4680
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
45
-
-
9844250021
-
A new photoreactivating enzyme that specifically repairs ultraviolet light-induced (6-4) photoproducts
-
Todo T, Takemori H, Ryo H, Ihara M, Matsunaga T, Nikaido O, Sato K, Nomura T (1993) A new photoreactivating enzyme that specifically repairs ultraviolet light-induced (6-4) photoproducts. Nature 272:109-112
-
(1993)
Nature
, vol.272
, pp. 109-112
-
-
Todo, T.1
Takemori, H.2
Ryo, H.3
Ihara, M.4
Matsunaga, T.5
Nikaido, O.6
Sato, K.7
Nomura, T.8
-
46
-
-
0029914630
-
Similarity among the Drosophila (6-4) photolyase, a human photolyase homologue, and the DNA photolyase-blue-light photoreceptor family
-
Todo T, Ryo H, Yamamoto K, Toh H, Inui T, Ayaki H, Nomura T, Ikenaga M (1996) Similarity among the Drosophila (6-4) photolyase, a human photolyase homologue, and the DNA photolyase-blue-light photoreceptor family. Science 272:109-112
-
(1996)
Science
, vol.272
, pp. 109-112
-
-
Todo, T.1
Ryo, H.2
Yamamoto, K.3
Toh, H.4
Inui, T.5
Ayaki, H.6
Nomura, T.7
Ikenaga, M.8
-
47
-
-
0030841052
-
Flavin adenine dinucleotide as a chromophore of the Xenopus (6-4) photolyase
-
Todo T, Kim S-T, Hitomi K, Otoshi E, Inui T, Morioka H, Kobayashi H, Ohtsuka E, Toh H, Ikenaga M (1997) Flavin adenine dinucleotide as a chromophore of the Xenopus (6-4) photolyase. Nucleic Acids Res 25:764-768
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 764-768
-
-
Todo, T.1
Kim, S.-T.2
Hitomi, K.3
Otoshi, E.4
Inui, T.5
Morioka, H.6
Kobayashi, H.7
Ohtsuka, E.8
Toh, H.9
Ikenaga, M.10
-
48
-
-
0028559513
-
A new class of DNA photolyases present in various organisms including aplacental mammals
-
Yasui A, Eker APM, Yasuhira S, Yajima H, Kobayashi T, Takao M, Oikawa A (1994) A new class of DNA photolyases present in various organisms including aplacental mammals. EMBO J 13: 6143-6151
-
(1994)
EMBO J
, vol.13
, pp. 6143-6151
-
-
Yasui, A.1
Eker, A.P.M.2
Yasuhira, S.3
Yajima, H.4
Kobayashi, T.5
Takao, M.6
Oikawa, A.7
|