Construction and characterization of a 10-fold genome equivalent rat P1- derived artificial chromosome library

Genomics

Volumn 50, Issue 3, 1998, Pages 306-316

  Woon, Peng Yeong ^a,b   Osoegawa, Kazutoyo ^b   Kaisaki, Pamela J ^a   Zhao, Baohui ^b   Catanese, Joseph J ^b   Gauguier, Dominique ^a   Cox, Roger ^a   Levy, Elaine R ^a   Lathrop, G Mark ^a   Monaco, Anthony P ^a   De Jong, Pieter J ^b  

^a UNIVERSITY OF OXFORD   (United Kingdom)

^b ROSWELL PARK CANCER INSTITUTE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA;

ANIMAL TISSUE; ARTICLE; BACTERIOPHAGE P1; CENTROMERE; CHIMERA; CONTROLLED STUDY; DNA LIBRARY; FEMALE; FLUORESCENCE IN SITU HYBRIDIZATION; GENE LOCUS; GENOME; MOLECULAR CLONING; NONHUMAN; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; PULSED FIELD GEL ELECTROPHORESIS; RAT; YEAST ARTIFICIAL CHROMOSOME;

ANIMALIA; RATTUS NORVEGICUS; RODENTIA;

EID: 0344588857     PISSN: 08887543     EISSN: None     Source Type: Journal    
DOI: 10.1006/geno.1998.5319     Document Type: Article

References (48)

1. Asakawa S., Abe I., Kudoh Y., Kishi N., Wang Y., Kubota R., Kudoh J., Kawasaki K., Minoshima S., Shimizu N. Human BAC library: Construction and rapid screening. Gene. 191:1997;69-79.
2. 2. Genome Res. 7:1997;434-440.
3. Bowater R. P., Jaworski A., Larson J. E., Parniewski P., Wells R. D. Transcription increases the deletion frequency of long CTG · CAG triplet repeats from plasmids inEscherichia coli. Nucleic Acids Res. 25:1997;2861-2868.
4. Buckler A. J., Chang D. D., Graw S. L., Brook J. D., Haber D. A, Sharp P. A., Housman D. E. Exon amplification: A strategy to isolate mammalian genes based on RNA splicing. Proc. Natl. Acad. Sci. USA. 88:1991;4005-4009.
5. Cai L., Taylor J. F., Wing R. A., Gallagher D. S., Woo S. S., Davis S. K. Construction and characterization of a bovine bacterial artificial chromosome library. Genomics. 29:1995;413-425.
6. Cai L., Schalkwyk L. C., Schoeberlein-Stehli A., Zee R. Y., Smith A., Haaf T., Georges M., Lehrach H., Lindpaintner K. Construction and characterization of a 10-genome equivalent yeast artificial chromosome library for the laboratory rat,Rattus norvegicus. Genomics. 39:1997;385-392.
7. Camargo A. A., Fischer K., Lanzer M. Construction and rapid screening of a representative yeast artificial chromosome library from thePlasmodium falciparumDd2. Parasitol. Res. 83:1997;87-89.
8. Canzian F. Phylogenetics of the laboratory ratRattus norvegicus. Genome Res. 7:1997;262-267.
9. de Bruin D., Lanzer M., Ravetch J. V. Characterization of yeast artificial chromosomes fromPlasmodium falciparum: Genomics. 14:1992;332-339.
10. Fan Y. S., Davis L. M., Shows T. B. Mapping small DNA sequences by fluorescencein situ. Proc. Natl. Acad. Sci. USA. 87:1990;6223-6227.
11. Gill T. J., Smith G. J., Wissler R. W., Kunz H. W. The rat as an experimental animal. Science. 245:1989;269-276.
12. Green E. D., Olson M. V. Chromosomal region of the cystic fibrosis gene in yeast artificial chromosomes: A model for human genome mapping. Science. 250:1990;94-98.
13. Green E. D., Riethman H. C., Dutchik J. E., Olson M. V. Detection and characterization of chimeric yeast artificial chromosome clones. Genomics. 11:1991;658-669.
14. Haldi M., Perrot V., Saumier M., Desai T., Cohen D., Cherif D., Ward D., Lander E. S. Large human YACs constructed in arad52. Genomics. 24:1994;478-484.
15. Haldi M. L., Lim P., Kaphingst K., Akella U., Whang J., Lander E. S. Construction of a large-insert yeast artificial chromosome library of the rat genome. Mamm. Genome. 8:1997.
16. Hanahan D., Jessee J., Bloom F. R. Plasmid transformation ofEscherichia coli. Methods Enzymol. 204:1991;63-113.
17. Ioannou P. A., Amemiya C. T., Garnes J., Kroisel P. M., Shizuya H., Chen C., Batzer M. A., de Jong P. J. A new bacteriophage P1-derived vector for the propagation of large human DNA fragments. Nat. Genet. 6:1994;84-89.
18. Ioannou P. A., de Jong P. J. Construction of bacterial artificial chromosome libraries using the modified P1 (PAC) system. Current Protocols in Human Genetics. 1996;Wiley, New York. p. 5.15.1-5.15.24.
19. Jacob H. J., Brown D. M., Bunker R. K., Daly M. J., Dzau V. J., Goodman A., Koike G., Kren V., Kurtz T., Lernmark A., Levan G., Mao Y., Pettersson A., Pravenec M., Simon J. S., Szpirer C., Szpirer J., Trolliet M. R., Winer E. S., Lander E. S. A genetic linkage map of the laboratory rat,Rattus norvegicus. Nat. Genet. 9:1995;63-69.
20. n. Proc. Natl. Acad. Sci. USA. 92:1995;11019-11023.
21. Kim U-J., Shizuya H., de Jong P. J., Birren B., Simon M. I. Stable propagation of cosmid sized human DNA inserts in an F factor based vector. Nucleic Acids Res. 20:1992;1083-1085.
22. Kim U-J., Birren B. W., Slepak T., Mancino V., Boysen C., Kang H. L., Simon M. I., Shizuya H. Construction and characterization of a human bacterial artificial chromosome library. Genomics. 34:1996;213-218.
23. Kohno K., Wada M., Schlessinger D., D'Urso M., Tanabe S., Oshiro T., Imamoto F. Stability of YACs containing ribosomal or RCP/GCP locus DNA in wild-typeS. cerevisiaeRAD. DNA Res. 1:1994;191-199.
24. Kohno K., Oshiro T., Kishine H., Wada M., Takeda H., Ihara N., Imamoto F., Kano Y., Schlessinger D. Construction and characterization of arad51rad52. Gene. 188:1997;175-181.
25. Kouprina N., Eldarov M., Moyzis R., Resnick M., Larionov V. A model system to assess the integrity of mammalian YACs during transformation and propagation in yeast. Genomics. 21:1994;7-17.
26. Lee C., Wevrick R., Fisher R. B., Ferguson-Smith M. A., Lin C. C. Human centromeric DNAs. Hum. Genet. 100:1997;291-304.
27. Millwood I. Y., Bihoreau M. T., Gauguier D., Hyne G., Levy E. R., Kreutz R., Lathrop G. M., Monaco A. P. A gene-based genetic linkage and comparative map of the rat X chromosome. Genomics. 40:1997;253-261.
28. Monaco A. P., Larin Z. YACs, BACs, PACs and MACs: Artificial chromosomes as research tools. Trends Biotechnol. 12:1994;280-286.
29. Munroe D. J., Haas M., Bric E., Whitton T., Aburatani H., Hunter K., Ward D., Housman D. E. IRE-Bubble PCR: A rapid method for efficient and representative amplification of human genomic DNA sequences from complex sources. Genomics. 19:1994;506-514.
30. Nakamura S., Asakawa S., Ohmido N., Fukui K., Shimizu N., Kawasaki S. Construction of an 800-kb contig in the near-centromeric region of the rice blast resistance genePi-ta2. Mol. Gen. Genet. 254:1997;611-620.
31. Neil D. L., Villasante A., Fisher R. B., Vetrie D., Cox B., Tyler-Smith C. Structural instability of human tandemly repeated DNA sequences cloned in yeast artificial chromosome vectors. Nucleic Acids Res. 18:1990;1421-1428.
32. Osoegawa, K. Woon, P. Y. Zhao, B. Frengen, E. Tateno, M. Catanese, J. J. de Jong, P. J. An improved approach for construction of bacterial artificial chromosome libraries.
33. Ota T., Amemiya C. T. A nonradioactive method for improved restriction analysis and finger-printing of P1 artificial chromosome clones. Genet. Anal. 12:1996;173-178.
34. Pravenec M., Gauguier D., Schott J. J., Buard J., Kren V., Bila V., Szpirer C., Szpirer J., Wang J. M., Huang H., St. Lezin E., Spence M. A., Flodman P., Printz M., Lathrop G. M., Vergnaud G., Kurtz T. W. A genetic linkage map of the rat derived from recombinant inbred strains. Mamm. Genome. 7:1996;117-127.
35. Samadashwily G. M., Raca G., Mirkin S. M. Trinucleotide repeats affect DNA replicationin vivo. Nat. Genet. 17:1997;298-304.
36. Sambrook J., Fritsch E. F., Maniatis T. Molecular Cloning: A Laboratory Manual. 1989;Cold Spring Harbor Laboratory Press, Cold Spring Harbor.
37. Sheng Y., Mancino V., Birren B. Transformation ofEscherichia coli. Nucleic Acids Res. 23:1995;1990-1996.
38. Shi G., Weh H. J., Hossfeld D. K. Reinterpretation of G-banded complex karyotypes by fluorescencein situ. Am. J. Hematol. 55:1997;69-76.
39. Shizuya H., Birren B., Kim U-J., Mancino V., Slepak T., Tachiiri Y., Simon M. Cloning and stable maintenance of 300-kilobase-pair fragments of human DNA inEscherichia coli. Proc. Natl. Acad. Sci. USA. 89:1992;8794-8797.
40. Sia E. A., Kokoska R. J., Dominska M., Greenwell P., Petes T. D. Microsatellite instability in yeast: Dependence on repeat unit size and DNA mismatch repair genes. Mol. Cell. Biol. 17:1997;2851-2858.
41. Silverman G. A., Ye R. D., Pollock K. M., Sadler J. E., Korsmeyer S. J. Use of yeast artificial chromosome clones for mapping and walking within human chromosome segment 18q21.3. Proc. Natl. Acad. Sci. USA. 86:1989;7485-7498.
42. Toyota N., Canzian F., Ushijima T., Hosoya Y., Kuramoto T., Serikawa T., Imai K., Sugimura T., Nagao M. A rat genetic map constructed by representational difference analysis markers with suitability for large-scale typing. Proc. Natl. Acad. Sci. USA. 93:1996;3914-3919.
43. Tyler-Smith C., Willard H. F. Mammalian chromosome structure. Curr. Opin. Gen. Dev. 3:1993;390-397.
44. Wang M., Chen X. N., Shouse S., Manson J., Wu Q., Li R., Wrestler J., Noya D., Sun Z. G., Korenberg J., Lai E. Construction and characterization of a human chromosome 2-specific BAC library. Genomics. 24:1994;527-534.
45. Wang G. L., Holsten T. E., Song W. Y., Wang H. P., Ronald P. C. Construction of a rice bacterial artificial chromosome library and identification of clones linked to the Xa-21 disease resistance locus. Plant J. 7:1995;525-533.
46. Weber J. L. Molecular biology of malaria parasites. Exp. Parasitol. 66:1988;143-170.
47. Woo S. S., Jiang J., Gill B. S., Paterson A. H., Wing R. A. Construction and characterization of a bacterial artificial chromosome library ofSorghum bicolor. Nucleic Acids Res. 22:1994;4922-4931.
48. nm. J. Biomol. Struct. Dyn. 14:1996;235-238.