Construction and characterization of a 10-genome equivalent yeast artificial chromosome library for the laboratory rat, Rattus norvegicus

Genomics

Volumn 39, Issue 3, 1997, Pages 385-392

  Cai, Li ^a   Schalkwyk, Leonard C ^b   Schoeberlein Stehli, Andreina ^c   Zee, Robert Y L ^a   Smith, Avrial ^b   Haaf, Thomas ^b   Georges, Michel ^c   Lehrach, Hans ^b   Lindpaintner, Klaus ^a,d,e  

^a HARVARD MEDICAL SCHOOL   (United States)

^b MAX PLANCK INSTITUTE FOR MOLECULAR GENETICS   (Germany)

^c UNIVERSITY OF LIÈGE   (Belgium)

^d MAX DELBRÜCK CENTER FOR MOLECULAR MEDICINE   (Germany)

^e BRIGHAM AND WOMEN S HOSPITAL   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CHROMOSOME STRUCTURE; GENE LIBRARY; GENETIC ANALYSIS; GENOME; MEDICAL RESEARCH; MOUSE; NONHUMAN; PRIORITY JOURNAL; YEAST;

EID: 0031081362     PISSN: 08887543     EISSN: None     Source Type: Journal    
DOI: 10.1006/geno.1996.4494     Document Type: Article

References (35)

1. Albertsen, H. M., Abderrahim, H., Cann, H. M., Dausset, J., Le, P. D., and Cohen, D. (1990). Construction and characterization of a yeast artificial chromosome library containing seven haploid human genome equivalents. Proc. Natl. Acad. Sci. USA 87: 4256-4260.
2. Anand, R., Riley, J. H., Butler, R., Smith, J. C., and Markham, A. G. (1990). A 3.5 genome equivalent multi access YAC library: Construction, characterization, screening and storage. Nucleic Acids Res. 18: 1951-1956.
3. Birren, B., and Lai, E. (1993). "Pulsed Field Gel Electrophoresis: A Practical Guide," Academic Press, San Diego.
4. Brownstein, B. H., Silverman, G. A., Little, R. D., Burke, D. T., Korsmeyer, S. J., Schlessinger, D., and Olson, M. V. (1989). Isolation of single-copy human genes from a library of yeast artificial chromosome clones. Science 244: 1348-1351.
5. Burgers, P. M. J., and Percival, K. J. (1987). Transformation of yeast spheroplasts without cell fusion. Anal. Biochem. 163: 391-397.
6. Burke, D. T., Carle, G. F., and Olson, M. Y. (1987). Cloning of large segments of exogenous DNA into yeast by means of artificial chromosome vectors. Science 236: 806-812.
7. Cai, L., Taylor, J. F., Wing, R. A., Gallagher, D. S., Woo, S.-S., and Davis, S. K. (1995). Construction and characterization of a bovine bacterial artificial chromosome library. Genomics 29: 413-425.
8. Coulson, A., Waterston, R., Kiff, J., Sulston, J., and Kohara, Y. (1988). Genome linking with yeast artificial chromosomes. Nature 335: 184-186.
9. Garza, D., Ajioka, J. W., Burke, D. T., and Hartl, D. L. (1989). Mapping the Drosophila genome with yeast artificial chromosomes. Science 246: 641-646.
10. Hedrich, J. H. (1990). "Genetic Monitoring of Inbred Strains of Rats" (H. J. Hedrich, Ed.), Gustav Fischer, New York.
11. Hubert, P., Lindpaintner, K., Bechmann, J. S., Serikawa, T., Soubrier, F., Dubay, C., Cartwright, P., De Gouyon, B., Julier, C., Takahasi, S., Vincent, M., Ganten, D., Georges, M., and Lathrop, G. M. (1991). Chromosomal mapping of two genetic loci associated with blood pressure regulation in hereditary hypertensive rats. Nature 353: 521-529.
12. Ioannou, P.A., Amemiya, C. T., Garnes, J., Kroisel, P. M., Shizuya, H., Chen, C., Batzer, M. A., and De Jong, P. J. (1994). A new bacteriophage P1-derived vector for the propagation of large human DNA fragments. Nature Genet. 6: 84-90.
13. Jacob, H., Lindpaintner, K., Lincoln, S. E., Kusumi, K., Bunker, R. E., Mao, Y. P., Ganten, D., Dzau, V. J., and Lander, E. S. (1991). Genetic mapping of a gene causing hypertension in the strokeprone spontaneously hypertensive rat. Cell 67: 213-224.
14. Jacob, H. J., Brown, D. M., Bunker, R. K., Daly, M. J., Dzau. V. J., Goodman, A., Koike, G., Kren, V., Kurtz, T., Lernmark, A., Levan, G., Mao, Y-P., Pettersson, A., Pravenec, M., Simon, J. S., Szpirer, C., Szpirer, J., Trolliet, M. R., Winer, E. S., and Lander, E. S. (1995). A genetic linkage map of the laboratory rat, Rattus norvegiens. Nature Genet. 9: 63-69.
15. Kim, U.-J., Birren, B. W., Slepak, T., Mancino, V., Boysen, C., Kang, H.-L., Simon, M. I., and Shizuya, H. (1996). Construction and characterization of a human bacterial artificial chromosome library. Genomics 34: 213-218.
16. Kreutz, R., Hubner, N., James, M. R., Bihoreau, M. T., Gauguier, D., Lathrop, G. M., Ganten, D., and Lindpaintner, K. (1995). Dissection of a quantitative trait locus for genetic hypertension on rat chromosome 10. Proc. Natl. Acad. Sci. USA 92: 8778-8782.
17. Larin, Z., Monaco, A. P., and Lehrach, H. (1991). Yeast artificial chromosome libraries containing large inserts from mouse and human DNA. Proc. Natl. Acad. Sci. USA 88: 4123-4127.
18. Leeb, T., Rettenberger, G., Hameister, H., Brem, G., and Brenig, B. (1995). Construction of a porcine YAC library and mapping of the cardiac muscle ryanodine receptor gene to chromosome 14q22-q23. Mamm. Genome 6: 37-41.
19. Levan, G., Szpirer, J., Szpirer, C., Klinga, K., Hanson, C., and Islam, M. Q. (1991) The gene map of the Norway rat (Rattus norvegicus) and comparative mapping with mouse and man. Genomics 10: 699-718.
20. Libert, F., Lefort, A., Okimoto, R., Womack, J., and Georges, M. (1993). Construction of a bovine genomic library of large yeast artificial chromosome clones. Genomics 18: 270-276.
21. Lisitsyn, N. A., Segre, J. A., Kusumi, K., Lisitsyn, N. M., Nadeau, J. H., Frankel, W. N., Wigler, M. H., and Lander, E. S. (1994) Direct isolationof polymorphic markers linked to a trait by genetically directed representational difference analysis. Nature Genet. 6: 57-63.
22. Pravenec, M., Gauguier, D., Schott, J.-J., Buard, J., Kren, V., Bila, V., Szpirer, C., Szpirer, J., Wang, J.-M., Huang, H., Lezin, E. St., Spencer, A., Flodman, P., Printz, M., Lathrop, G. M., Vergnaud, G., and Kurtz, T. W. (1996). A genetic linkage map of the rat derived from recombinant inbred strains. Mamm. Genome 7: 117-127.
23. Prouty, S. M., Hanson, K. D, Boyle, A. L., Brown, J. R., Shichiri, M., Follansbee, M. R., Kang, W., and Sedivy, J. M. (1993). A cell culture model system for genetic analyses of the cell cycle by targeted homologous recombination. Oncogene 8(4): 899-907.
24. Rossi, J. M., Burke, D. T., Leung, J. C., Koos, D. S., Chen, H., and Tilghman, S. M. (1992). Genomic analysis using a yeast artificial chromosome library with mouse DNA inserts. Proc. Natl. Acad. Sci. USA 89: 2456-2460.
25. Rubattu, S., Volpe, M., Kreutz, R., Ganten, U., Ganten, D., and Lindpaintner, K. (1996). Chromosomal mapping of quantitative trait loci contributing to stroke in a rat model of complex human disease. Nature Genet. 13: 429-434.
26. Sambrook, J., Fritsch, E. F., and Maniatis, T. (1989). "Molecular Cloning: A Laboratory Manual," 2nd ed., Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
27. Serikawa, T., Kuramoto, T., Hilbert, P., Mori, M., Yamada, J., Dubay, C. J., Lindpainter, K., Ganten, D., Guenet, J-L., Lathrop, G. M., and Bechmann, J. S. (1992). Rat gene mapping using PCR-analyzed microsatellites. Genetics 131: 703-723.
28. Shizuya, H., Birren, B., Kim, U.-J., Mancino, V., Slepak, T., Tachiiri, T., and Simon, M. (1992). Cloning and stable maintenance of 300-kilobase-pair fragments of human DNA in Escherichia coli using an F-factor-based vector. Proc. Natl. Acad. Sci. USA 89: 8794-8797.
29. Smith, D. R., Smyth, A. P., and Moir, D. T. (1990). Amplification of large artificial chromosomes. Proc. Natl. Acad. Sci. USA 87:8242-8246.
30. Smith, D. R. (1994). Vectors and host strains for cloning and modification of yeast artificial chromosomes. In "YAC Libraries: A User's Guide" (D. L. Nelson and B. H. Brownstein, Eds.), pp. 1-31, Freeman, New York.
31. Telenius, H., Carter, N. P., Bebb, C. E., Nordenskjold, M., Ponder, B. A. J., and Tunnacliffe, A. (1992). Degenerate oligonucleotideprimed PCR: General amplification of target DNA by a single degenerate primer. Genomics 13: 718-725.
32. Traver, C. N., Klapholz, S., Hyman, R. W., and Davis, R. W. (1989). Rapid screening of a human genomic library in yeast artificial chromosomes for single-copy sequences. Proc. Natl. Acad. Sci. USA 86: 5898-5902.
33. Wang, M., Chen, X.-N., Shouse, S., Manson, J., Wu, Q, Li, R., Wrestler, Noya, D., Sun, Z.-G., Korenberg, J., and Lai, E. (1994). Construction and characterization of a human chromosome 2-specific BAG library. Genomics 24: 527-534.
34. Woo, S.-S., Jiang, J., Gill, B. S., Paterson, A. H., and Wing, R. A. (1994). Construction and characterization of a bacterial artificial chromosome library of Sorghum bicolor. Nucleic Acids Res. 22: 4922-4931.
35. Yamada, J., Kuramoto, T., and Serikawa, T. (1994). A rat genetic linkage map and comparative maps for mouse or human homologous rat genes. Mamm. Genome 5: 63-83.