Protein secondary structure prediction in different structural classes

Protein Engineering

Volumn 11, Issue 4, 1998, Pages 249-251

  Gromiha, M Michael ^a   Selvaraj, S ^b  

^a RIKEN TSUKUBA INSTITUTE   (Japan)

^b BHARATHIDASAN UNIVERSITY   (India)

Author keywords

Globular proteins; Long range interactions; Medium range interactions; Secondary structure prediction; Structural class

Indexed keywords

ARTICLE; MOLECULAR INTERACTION; PREDICTION; PRIORITY JOURNAL; PROTEIN FOLDING; PROTEIN SECONDARY STRUCTURE;

EID: 0031800191     PISSN: 02692139     EISSN: None     Source Type: Journal    
DOI: 10.1093/protein/11.4.249     Document Type: Article

References (31)

1. Boberg, J., Salakoski, T. and Vihinen, M. (1995) Protein Engng, 8, 505-512.
2. Chandonia, J.-M. and Karplus, M. (1996) Protein Sci., 5, 768-774.
3. Chou, K.C. (1995) Proteins, 21, 319-344.
4. Chou, K.C. and Zhang, C.T. (1993) Eur. J. Biochem., 207, 429-433.
5. Chou, P.Y. and Fasman, G.D. (1974) Biochemistry, 13, 222-245.
6. Chou, P.Y. and Fasman, G.D. (1978) Adv. Enzymol., 47, 45-148.
7. Cid, H., Bunster, M., Canales, M. and Gazitura, F. (1992) Protein Engng, 5, 373-375.
8. Deleage, G., Clerc, F.F. Roux, B. and Gautheron, D.C. (1988) CABIOS, 4, 351-356.
9. Fiser, A., Dosztanyi, Z. and Simon, I. (1997) CABIOS, 13, 297-301.
10. Frishman, D. and Argos, P. (1997) Proteins, 27, 329-335.
11. Garnier, J., Osguthorpe, D.J. and Robson, B. (1978) J. Mol. Biol., 120, 97-120.
12. Gromiha, M.M. and Ponnuswamy, P.K. (1995) Int. J. Pept. Protein Res., 45, 225-240.
13. Gromiha, M.M. and Selvaraj, S. (1997) J. Biol. Phys., 23, 151-162.
14. Ito, M., Matsuo, Y. and Nishikawa, K. (1997) CABIOS, 13, 415-423.
15. King, R.D. and Sternberg, M.J.E. (1996) Protein Sci., 5, 2298-2310.
16. Kneller, D.G., Cohen, F.E. and Langridge, R. (1990) J. Mol. Biol., 214, 171-182.
17. Levitt, M. and Chothia, C. (1976) Nature, 261, 552-557.
18. Manavalan, P. and Ponnuswamy, P.K. (1977) Arch. Biochem.Biophys., 184, 476-587.
19. Manavalan, P. and Ponnuswamy, P.K. (1978) Nature, 275, 673-674.
20. Metfessel, B.A., Saurugger, P.N., Connelly, D.P. and Rich, S.S. (1993) Protein Sci., 2, 1171-1182.
21. Michie, A.D., Orengo, C.A. and Thornton, J.M. (1996) J. Mol. Biol., 262, 168-185.
22. Orengo, C.A., Michie, A.D., Jones, S., Jones, D.T., Swindells, M.B. and Thornton, J.M. (1997) Structure, 5, 1093-1108.
23. Ponnuswamy, P.K., Warme, P.K. and Scheraga, H.A. (1973) Proc. Natl Acad.Sci. USA, 70, 830-833.
24. Ponnuswamy, P.K., Prabakaran, M. and Manavalan, P. (1980) Biochim. Biophys. Acta, 623, 301-316.
25. Ptitsyn, O.B. and Finkelstein, A.V. (1983) Biopolymers, 22, 15-25.
26. Qian, N. and Sejnowski, T.J. (1988) J. Mol. Biol., 202, 865-884.
27. Richardson, J.S. and Richardson, D.C. (1989) In Fasman, G.D. (ed.), Prediction of Protein Structure and Principles of Protein Conformation. Plenum Press, New York, pp. 1-98.
28. Rost, B. and Sandor, C. (1994) Proteins, 19, 55-72.
29. Russell, R.B. and Barton, G.J. (1993) J. Mol. Biol., 234, 951-957.
30. Yi, T.-M. and Lander, E.S. (1993) J. Mol. Biol., 232, 1117-1129.
31. Zhang, C.T., Chou, K.C. and Maggiora, G.M. (1995) Protein Engng, 8, 425-435.