-
1
-
-
0025890946
-
Influence of proline residues on protein conformation
-
MacArthur M.W., Thornton J.M. Influence of proline residues on protein conformation. J. Mol. Biol. 218:1991;397-412.
-
(1991)
J. Mol. Biol.
, vol.218
, pp. 397-412
-
-
MacArthur, M.W.1
Thornton, J.M.2
-
2
-
-
0026553766
-
Analysis of non-polar regions in proteins
-
Karpeisky M.Ya., Ilyin V.A. Analysis of non-polar regions in proteins. J. Mol. Biol. 224:1992;629-638.
-
(1992)
J. Mol. Biol.
, vol.224
, pp. 629-638
-
-
Karpeisky, M.Ya.1
Ilyin, V.A.2
-
3
-
-
0027386832
-
The role of local tight packing of hydrophobic groups in β-structure
-
Vtyurin N. The role of local tight packing of hydrophobic groups in β-structure. Proteins. 15:1993;62-70.
-
(1993)
Proteins
, vol.15
, pp. 62-70
-
-
Vtyurin, N.1
-
4
-
-
0028325958
-
On the conformational stability of folded proteins
-
Ponnuswamy P.K., Gromiha M.M. On the conformational stability of folded proteins. J. Theor. Biol. 166:1994;63-74.
-
(1994)
J. Theor. Biol.
, vol.166
, pp. 63-74
-
-
Ponnuswamy, P.K.1
Gromiha, M.M.2
-
5
-
-
0028295169
-
Correlated mutations and residue contacts in proteins
-
Gobel U., Sander C., Schneider R., Valencia A. Correlated mutations and residue contacts in proteins. Proteins. 18:1994;309-317.
-
(1994)
Proteins
, vol.18
, pp. 309-317
-
-
Gobel, U.1
Sander, C.2
Schneider, R.3
Valencia, A.4
-
6
-
-
0030832809
-
Short-range conformational energies, secondary structure propensities, and recognition of correct sequence-structure matches
-
Bahar I., Kaplan M., Jernigan R.L. Short-range conformational energies, secondary structure propensities, and recognition of correct sequence-structure matches. Proteins. 29:1997;292-308.
-
(1997)
Proteins
, vol.29
, pp. 292-308
-
-
Bahar, I.1
Kaplan, M.2
Jernigan, R.L.3
-
7
-
-
0030945036
-
Consistency in structural energetics of protein folding and peptide recognition
-
Zhang C., Cornette J.L., Delisi C. Consistency in structural energetics of protein folding and peptide recognition. Protein Sci. 6:1997;1057-1064.
-
(1997)
Protein Sci.
, vol.6
, pp. 1057-1064
-
-
Zhang, C.1
Cornette, J.L.2
Delisi, C.3
-
8
-
-
0031909873
-
Recognition of analogous and homologous protein folds - assessment of prediction success and associated alignment accuracy using empirical substitution matrices
-
Russell R.B., Saqi M.A., Bates P.A., Sayle R.A., Sternberg M.J. Recognition of analogous and homologous protein folds - assessment of prediction success and associated alignment accuracy using empirical substitution matrices. Protein Eng. 11:1998;1-9.
-
(1998)
Protein Eng.
, vol.11
, pp. 1-9
-
-
Russell, R.B.1
Saqi, M.A.2
Bates, P.A.3
Sayle, R.A.4
Sternberg, M.J.5
-
9
-
-
0026992556
-
Nonlocal interactions stabilize compact folding intermediates in reduced unfolded bovine pancreatic trypsin inhibitor
-
Gottfried D.S., Haas E. Nonlocal interactions stabilize compact folding intermediates in reduced unfolded bovine pancreatic trypsin inhibitor. Biochemistry. 31:1992;12353-12362.
-
(1992)
Biochemistry
, vol.31
, pp. 12353-12362
-
-
Gottfried, D.S.1
Haas, E.2
-
10
-
-
0028342488
-
A statistical analysis of side-chain conformations in proteins: Comparison with ECEPP predictions
-
Nayeem A., Scheraga H.A. A statistical analysis of side-chain conformations in proteins: comparison with ECEPP predictions. J. Protein Chem. 13:1994;283-296.
-
(1994)
J. Protein Chem.
, vol.13
, pp. 283-296
-
-
Nayeem, A.1
Scheraga, H.A.2
-
11
-
-
0030781040
-
Residue-residue mean-force potentials for protein structure recognition
-
Reva B., Finkelstein A.V., Sanner M., Olson A.J. Residue-residue mean-force potentials for protein structure recognition. Protein Eng. 10:1997;865-876.
-
(1997)
Protein Eng.
, vol.10
, pp. 865-876
-
-
Reva, B.1
Finkelstein, A.V.2
Sanner, M.3
Olson, A.J.4
-
12
-
-
0031575423
-
MONSSTER: A method for folding globular proteins with a small number of distance restraints
-
Skolnick J., Kolinski A., Ortiz A.R. MONSSTER: a method for folding globular proteins with a small number of distance restraints. J. Mol. Biol. 265:1997;217-241.
-
(1997)
J. Mol. Biol.
, vol.265
, pp. 217-241
-
-
Skolnick, J.1
Kolinski, A.2
Ortiz, A.R.3
-
13
-
-
0029155772
-
Impact of local and non-local interactions on thermodynamics and kinetics of protein folding
-
Abkevich V.I., Gutin A.M., Shakhnovich E.I. Impact of local and non-local interactions on thermodynamics and kinetics of protein folding. J. Mol. Biol. 252:1995;460-471.
-
(1995)
J. Mol. Biol.
, vol.252
, pp. 460-471
-
-
Abkevich, V.I.1
Gutin, A.M.2
Shakhnovich, E.I.3
-
14
-
-
0029796429
-
Distance distributions in proteins: A six-parameter representation
-
Reese M.G., Lund O., Bohr J., Bohr H., Hansen J.E., Brunak S. Distance distributions in proteins: a six-parameter representation. Protein Eng. 9:1996;733-740.
-
(1996)
Protein Eng.
, vol.9
, pp. 733-740
-
-
Reese, M.G.1
Lund, O.2
Bohr, J.3
Bohr, H.4
Hansen, J.E.5
Brunak, S.6
-
15
-
-
0032080921
-
Relationships between protein sequence and structure patterns based on residue contacts
-
Selbig J., Argos P. Relationships between protein sequence and structure patterns based on residue contacts. Proteins. 31:1998;172-185.
-
(1998)
Proteins
, vol.31
, pp. 172-185
-
-
Selbig, J.1
Argos, P.2
-
16
-
-
0001614001
-
Influence of medium and long-range interactions in different structural classes of globular proteins
-
Gromiha M.M., Selvaraj S. Influence of medium and long-range interactions in different structural classes of globular proteins. J. Biol. Phys. 23:1997;151-162.
-
(1997)
J. Biol. Phys.
, vol.23
, pp. 151-162
-
-
Gromiha, M.M.1
Selvaraj, S.2
-
17
-
-
0031800191
-
Protein secondary structure prediction in different structural classes
-
Gromiha M.M., Selvaraj S. Protein secondary structure prediction in different structural classes. Protein Eng. 11:1998;249-251.
-
(1998)
Protein Eng.
, vol.11
, pp. 249-251
-
-
Gromiha, M.M.1
Selvaraj, S.2
-
20
-
-
0017411710
-
The protein data bank: A computer-based archival file for macromolecular structures
-
Bernstein F.C., Koetzle T.F., Williams G.J.B.et al. The protein data bank: a computer-based archival file for macromolecular structures. J. Mol. Biol. 112:1977;535-542.
-
(1977)
J. Mol. Biol.
, vol.112
, pp. 535-542
-
-
Bernstein, F.C.1
Koetzle, T.F.2
Williams, G.J.B.3
-
21
-
-
0002638513
-
Protein Data Bank
-
in: F.H. Allen, G. Bergerhoft, R. Sievers editors
-
E. Abola, F.C. Bernstein, S.H. Bryant, T.F. Koetzle, J. Weng, Protein Data Bank, in: F.H. Allen, G. Bergerhoft, R. Sievers editors. Crystallographic Databases - Information Content, Software Systems, Scientific Applications, 1987, pp. 107-132.
-
(1987)
Crystallographic Databases - Information Content, Software Systems, Scientific Applications
, pp. 107-132
-
-
Abola, E.1
Bernstein, F.C.2
Bryant, S.H.3
Koetzle, T.F.4
Weng, J.5
-
22
-
-
0032940544
-
SCOP: A structural classification of proteins database
-
Hubbard T.J.P., Ailey B., Brenner S.E., Murzin A.G., Chothia C. SCOP: a structural classification of proteins database. Nucl. Acids Res. 27:1999;254-256.
-
(1999)
Nucl. Acids Res.
, vol.27
, pp. 254-256
-
-
Hubbard, T.J.P.1
Ailey, B.2
Brenner, S.E.3
Murzin, A.G.4
Chothia, C.5
-
23
-
-
0032926060
-
The CATH database provides insights into protein structure/function relationships
-
Orengo C.A., Pearl F.M.G., Bray J.E.et al. The CATH database provides insights into protein structure/function relationships. Nucl. Acids Res. 27:1999;275-279.
-
(1999)
Nucl. Acids Res.
, vol.27
, pp. 275-279
-
-
Orengo, C.A.1
Pearl, F.M.G.2
Bray, J.E.3
-
24
-
-
0020997912
-
Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features
-
Kabsch W., Sander C. Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features. Biopolymers. 22:1983;2577-2637.
-
(1983)
Biopolymers
, vol.22
, pp. 2577-2637
-
-
Kabsch, W.1
Sander, C.2
-
26
-
-
0017588168
-
A study of the preferred environment of amino acid residues in globular proteins
-
Manavalan P., Ponnuswamy P.K. A study of the preferred environment of amino acid residues in globular proteins. Arch. Biochem. Biophys. 184:1977;476-487.
-
(1977)
Arch. Biochem. Biophys.
, vol.184
, pp. 476-487
-
-
Manavalan, P.1
Ponnuswamy, P.K.2
-
27
-
-
0018077908
-
Hydrophobic character of amino acid residues in globular proteins
-
Manavalan P., Ponnuswamy P.K. Hydrophobic character of amino acid residues in globular proteins. Nature. 275:1978;673-674.
-
(1978)
Nature
, vol.275
, pp. 673-674
-
-
Manavalan, P.1
Ponnuswamy, P.K.2
-
28
-
-
0027354210
-
Hydrophobic characteristics of folded proteins
-
Ponnuswamy P.K. Hydrophobic characteristics of folded proteins. Prog. Biophys. Mol. Biol. 59:1993;57-103.
-
(1993)
Prog. Biophys. Mol. Biol.
, vol.59
, pp. 57-103
-
-
Ponnuswamy, P.K.1
-
29
-
-
1842339881
-
Interresidue interactions in protein classes
-
Gugolya Z., Dosztanyi Z., Simon I. Interresidue interactions in protein classes. Proteins. 27:1997;360-366.
-
(1997)
Proteins
, vol.27
, pp. 360-366
-
-
Gugolya, Z.1
Dosztanyi, Z.2
Simon, I.3
-
30
-
-
0027382240
-
Prediction of transmembrane helices from hydrophobic characteristics of proteins
-
Ponnuswamy P.K., Gromiha M.M. Prediction of transmembrane helices from hydrophobic characteristics of proteins. Int. J. Pept. Protein Res. 42:1993;326-341.
-
(1993)
Int. J. Pept. Protein Res.
, vol.42
, pp. 326-341
-
-
Ponnuswamy, P.K.1
Gromiha, M.M.2
-
31
-
-
0028919502
-
Prediction of protein secondary structures from their hydrophobic characteristics
-
Gromiha M.M., Ponnuswamy P.K. Prediction of protein secondary structures from their hydrophobic characteristics. Int. J. Pept. Protein Res. 45:1995;225-240.
-
(1995)
Int. J. Pept. Protein Res.
, vol.45
, pp. 225-240
-
-
Gromiha, M.M.1
Ponnuswamy, P.K.2
-
32
-
-
0000961820
-
The development of the prediction of protein structure
-
in G.D. Fasman editor Plenum Press, New York
-
G.D. Fasman, The development of the prediction of protein structure, in G.D. Fasman editor. Prediction of Protein Structure and Principles of Protein Conformation, Plenum Press, New York, 1989, pp. 193-316.
-
(1989)
Prediction of Protein Structure and Principles of Protein Conformation
, pp. 193-316
-
-
Fasman, G.D.1
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