메뉴 건너뛰기




Volumn 178, Issue 23, 1996, Pages 6824-6832

The tfdR gene product can successfully take over the role of the insertion element-inactivated tfdT protein as a transcriptional activator of the tfdCDEF gene cluster, which encodes chlorocatechol degradation in Ralstonia eutropha JMP134(pJP4)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL PROTEIN; GENE PRODUCT; REGULATOR PROTEIN;

EID: 0029852994     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/jb.178.23.6824-6832.1996     Document Type: Article
Times cited : (69)

References (48)
  • 1
    • 0019805971 scopus 로고
    • Specific-purpose plasmid cloning vectors. II. Broad host range, high copy number, RSF1010-derived vectors, and a host-vector system for gene cloning in Psedomonas
    • Bagdasarian, M., R. Lurz, B. Ruckert, F. C. Kranklin, M. M. Bagdasarian, J. Frey, and K. N. Timmis. 1981. Specific-purpose plasmid cloning vectors. II. Broad host range, high copy number, RSF1010-derived vectors, and a host-vector system for gene cloning in Psedomonas. Gene 16:237-247.
    • (1981) Gene , vol.16 , pp. 237-247
    • Bagdasarian, M.1    Lurz, R.2    Ruckert, B.3    Kranklin, F.C.4    Bagdasarian, M.M.5    Frey, J.6    Timmis, K.N.7
  • 2
    • 0028008450 scopus 로고
    • Identification and charactertization of a new plasmid carrying genes for degradation of 2.4-dichlnrophenoxyacelale from Psudomonas cepacia CSV90
    • Bhat, M. A., M. Tsuda, K. Horiiki, M. Nozaki, C. S. Vaidyanalhan, and I. Nakazawa. 1994. Identification and charactertization of a new plasmid carrying genes for degradation of 2.4-dichlnrophenoxyacelale from Psudomonas cepacia CSV90. Appl. Environ. Microhiol. 60:307-312.
    • (1994) Appl. Environ. Microhiol. , vol.60 , pp. 307-312
    • Bhat, M.A.1    Tsuda, M.2    Horiiki, K.3    Nozaki, M.4    Vaidyanalhan, C.S.5    Nakazawa, I.6
  • 3
    • 0017184389 scopus 로고
    • A rapid and sensitive method for the quantilalion of microgram quantities of protein utilizing the principle of protein-dye hinding
    • Bradford, M. M. 1976. A rapid and sensitive method for the quantilalion of microgram quantities of protein utilizing the principle of protein-dye hinding. Anal. Biochem. 72:248-254.
    • (1976) Anal. Biochem. , vol.72 , pp. 248-254
    • Bradford, M.M.1
  • 4
    • 0028128866 scopus 로고
    • Purification of the LysR family regulator. ClcR. and its interaction with the Psudomonas putida clcABD chlorocatechol operon promoter
    • Coco, W. M., M. R. Parsek, and A. M. Chakrabarty. 1994. Purification of the LysR family regulator. ClcR. and its interaction with the Psudomonas putida clcABD chlorocatechol operon promoter. J. Bacteriol. 176:5530-5533.
    • (1994) J. Bacteriol. , vol.176 , pp. 5530-5533
    • Coco, W.M.1    Parsek, M.R.2    Chakrabarty, A.M.3
  • 5
    • 0343288754 scopus 로고
    • Nucleotide sequence and initial functional characterization of the clcR gene encoding a LysR family activator of the clcABD chlorocalechol operon in Pseudomonas putida
    • Coco, W. M., R. K. Rothmel, S. Henikoff, and A. M. Chakrabarty. 1993. Nucleotide sequence and initial functional characterization of the clcR gene encoding a LysR family activator of the clcABD chlorocalechol operon in Pseudomonas putida. Proc. Natl. Acad. Sci. USA 90:1033-11137.
    • (1993) Proc. Natl. Acad. Sci. USA , vol.90 , pp. 1033-11137
    • Coco, W.M.1    Rothmel, R.K.2    Henikoff, S.3    Chakrabarty, A.M.4
  • 6
    • 0019511050 scopus 로고
    • Properties of six pesticide degradation plasmids isolated from Alculigenex puradosus and Alfuligenes cutniphus
    • Don, R. H., and J. M. Pemberton. 1981. Properties of six pesticide degradation plasmids isolated from Alculigenex puradosus and Alfuligenes cutniphus. J. Bacteriol. 145:681-686.
    • (1981) J. Bacteriol. , vol.145 , pp. 681-686
    • Don, R.H.1    Pemberton, J.M.2
  • 7
    • 0021957751 scopus 로고
    • Genetic and physical map of the 2,4-dichlorophenoxyacctic acid-dcgradative plasmid pJP4
    • Don, R. H., and J. M. Pemberton. 1985. Genetic and physical map of the 2,4-dichlorophenoxyacctic acid-dcgradative plasmid pJP4. J. Bacteriol. 161: 466-468.
    • (1985) J. Bacteriol. , vol.161 , pp. 466-468
    • Don, R.H.1    Pemberton, J.M.2
  • 8
    • 0022003968 scopus 로고
    • Transposon mutagenesis and cloning analysis of the pathways for degradation of 2,4-dichlorophenoxvacetic acid and 3-chlorobenzoate in Alcaligenes eutrophus JMPI34(pJP4)
    • Don, R. H., A. J. Weightman, H.-J. Knackmuss, and K. N. Timmis. 1985. Transposon mutagenesis and cloning analysis of the pathways for degradation of 2,4-dichlorophenoxvacetic acid and 3-chlorobenzoate in Alcaligenes eutrophus JMPI34(pJP4). J. Bacteriol. 161:85-90.
    • (1985) J. Bacteriol. , vol.161 , pp. 85-90
    • Don, R.H.1    Weightman, A.J.2    Knackmuss, H.-J.3    Timmis, K.N.4
  • 9
    • 0016156623 scopus 로고
    • Isolation and characterization of a 3-chlorobenzoate degrading pseudomonad
    • Dorn, E., M. Hellwig, W. Reineke, and H.-J. Knackmuss. 1974 Isolation and characterization of a 3-chlorobenzoate degrading pseudomonad. Arch. Microbiol. 99:61-70.
    • (1974) Arch. Microbiol. , vol.99 , pp. 61-70
    • Dorn, E.1    Hellwig, M.2    Reineke, W.3    Knackmuss, H.-J.4
  • 10
    • 0017895519 scopus 로고
    • Chemical structure and biodcgradability of halogcnated aromatic compounds. Two catecbol 1,2-dioxygcnases from a 3-chlorobenzoalc-grown pseudomonad
    • Dorn, E., and H.-J. Knackmuss. 1978. Chemical structure and biodcgradability of halogcnated aromatic compounds. Two catecbol 1,2-dioxygcnases from a 3-chlorobenzoalc-grown pseudomonad. Biochem. J. 174:73-84.
    • (1978) Biochem. J. , vol.174 , pp. 73-84
    • Dorn, E.1    Knackmuss, H.-J.2
  • 11
    • 0017814391 scopus 로고
    • Chemical structure and hiodegradability of halogenated aromatic compounds. Substituent effects on 1,2-dioxygenation of catechol
    • Dom, E., and H.-J. Knackmuss. 1978. Chemical structure and hiodegradability of halogenated aromatic compounds. Substituent effects on 1,2-dioxygenation of catechol. Biochem. J. 174:85-94.
    • (1978) Biochem. J. , vol.174 , pp. 85-94
    • Dom, E.1    Knackmuss, H.-J.2
  • 12
    • 0025734539 scopus 로고
    • Nuclcotide sequence of IS402 from Pseudomonas cepacia
    • Ferrante, A. A., and T. G. Lessie. 1991. Nuclcotide sequence of IS402 from Pseudomonas cepacia Gene 102:143-144.
    • (1991) Gene , vol.102 , pp. 143-144
    • Ferrante, A.A.1    Lessie, T.G.2
  • 13
    • 0000527903 scopus 로고
    • Replication of an origin- Containing derivative of plasmid RK2 dependent on a plasmid function provided in Irans
    • Figurski, D. H., and D. R. Helinski. 1979. Replication of an origin- containing derivative of plasmid RK2 dependent on a plasmid function provided in Irans. Proc. Natl. Acad. Sci. USA 76:1648-1652.
    • (1979) Proc. Natl. Acad. Sci. USA , vol.76 , pp. 1648-1652
    • Figurski, D.H.1    Helinski, D.R.2
  • 14
    • 0005536404 scopus 로고
    • Molecular and functional analysis of the TOL plasmid pWWO from Pseudornontis putida and cloning of genes tor the entire regulated aromatic ring meta cleavage pathway
    • Franklin, F. C., M. Bagdasarian, M. M. Bagdasarian, and K. N. Timmis. 1981. Molecular and functional analysis of the TOL plasmid pWWO from Pseudornontis putida and cloning of genes tor the entire regulated aromatic ring meta cleavage pathway. Proc. Natl. Acad. Sci. USA 78:7458-7462.
    • (1981) Proc. Natl. Acad. Sci. USA , vol.78 , pp. 7458-7462
    • Franklin, F.C.1    Bagdasarian, M.2    Bagdasarian, M.M.3    Timmis, K.N.4
  • 15
    • 0023374169 scopus 로고
    • Organisation and nucleotide sequence determination of a gene cluster involved in 3-chlorocatechol degradation
    • Frantz, B., and A. M. Chakrabarly. 1987. Organisation and nucleotide sequence determination of a gene cluster involved in 3-chlorocatechol degradation. Proc. Natl. Acad. Sci. USA 84:4460-4464.
    • (1987) Proc. Natl. Acad. Sci. USA , vol.84 , pp. 4460-4464
    • Frantz, B.1    Chakrabarly, A.M.2
  • 16
    • 0023157619 scopus 로고
    • Nueleotide sequence and expression of clcD, a plasmidhorne dienelactone hydrulase gene from Pseudomonas sp. strain B13
    • Frantz, B., K. L. Ngai, D. K. Chatterjee, L. N. Ornston, and A. M. Chakraharty. 1987. Nueleotide sequence and expression of clcD, a plasmidhorne dienelactone hydrulase gene from Pseudomonas sp. strain B13. J. Bacteriol. 169:704-709.
    • (1987) J. Bacteriol. , vol.169 , pp. 704-709
    • Frantz, B.1    Ngai, K.L.2    Chatterjee, D.K.3    Ornston, L.N.4    Chakraharty, A.M.5
  • 17
    • 0026396170 scopus 로고
    • Toxicity of chlorobenzene on Pseudomonas sp. strain RHOI. a chlorohenzene-degrading strain
    • Fritz, H., W. Reineke, and E. Schmidt. 1991. Toxicity of chlorobenzene on Pseudomonas sp. strain RHOI. a chlorohenzene-degrading strain. Biodegradation 2:165-170.
    • (1991) Biodegradation , vol.2 , pp. 165-170
    • Fritz, H.1    Reineke, W.2    Schmidt, E.3
  • 20
    • 0015101919 scopus 로고
    • Regulation of the β-ketoadipale pathway in Alcaligeiies nulrophus
    • Johnson, B. F., and R. V. Stanier. 1971. Regulation of the β-ketoadipale pathway in Alcaligeiies nulrophus. J. Bacteriol. 107:476-485.
    • (1971) J. Bacteriol. , vol.107 , pp. 476-485
    • Johnson, B.F.1    Stanier, R.V.2
  • 21
    • 0025278363 scopus 로고
    • Regulation of tfdCDEF by tjdR of the 2,4-dichlorophcnoxyacetic acid degradation plasmid pJP4
    • Kaphammer, B., J. J. Kukor, and R. H. Olsen. 1990. Regulation of tfdCDEF by tjdR of the 2,4-dichlorophcnoxyacetic acid degradation plasmid pJP4. J. Bacteriol. 172:2280-2286.
    • (1990) J. Bacteriol. , vol.172 , pp. 2280-2286
    • Kaphammer, B.1    Kukor, J.J.2    Olsen, R.H.3
  • 22
    • 0025195710 scopus 로고
    • Cloning and characterization of tfdS, the repressor-activator gene of tfdB from the 2,4-dichlorophenoxyacetic acid catabolic plasmid pJP4
    • Kaphammer, B., and R. H. Olsen. 1990. Cloning and characterization of tfdS, the repressor-activator gene of tfdB from the 2,4-dichlorophenoxyacetic acid catabolic plasmid pJP4. J. Baeteriol. 172:5856-5862.
    • (1990) J. Baeteriol. , vol.172 , pp. 5856-5862
    • Kaphammer, B.1    Olsen, R.H.2
  • 24
    • 0014949207 scopus 로고
    • Cleavage of structural proteins during the assembly of the head of haeteriophage T4
    • Laemmli. U. K. 1970. Cleavage of structural proteins during the assembly of the head of haeteriophage T4. Nature (London) 227:680-685.
    • (1970) Nature (London) , vol.227 , pp. 680-685
    • Laemmli, U.K.1
  • 25
    • 0028258004 scopus 로고
    • Analysis of the binding site of the LysR-type Iranscriptional activator TcbR on the IchR and tcbC divergent promoter sequences
    • Leveau,J. H. J., W. M. de Vos, and J. R. van der Meer. 1994. Analysis of the binding site of the LysR-type Iranscriptional activator TcbR on the IchR and tcbC divergent promoter sequences. J. Bacteriol. 176:1850-1856.
    • (1994) J. Bacteriol. , vol.176 , pp. 1850-1856
    • Leveau, J.H.J.1    De Vos, W.M.2    Van der Meer, J.R.3
  • 27
    • 0028274646 scopus 로고
    • Analysis of duplicated gene sequences associated with ifdR and tfdS in Alcaligenes eutrophuy JMP134
    • Matruhulham, U., and A. R. Harker. 1994. Analysis of duplicated gene sequences associated with ifdR and tfdS in Alcaligenes eutrophuy JMP134. J. Baeteriol. 176:2348-2353.
    • (1994) J. Baeteriol. , vol.176 , pp. 2348-2353
    • Matruhulham, U.1    Harker, A.R.2
  • 28
    • 0028565028 scopus 로고
    • Interaction of two LysR-type regulatory proteins CatR and ClcR with helerologous promoters: Functional anil evolutionary implications
    • Parsek, M. R., S. M. McFall, D. L. Shinabarger, and A. M. Chakrabarty. 1994. Interaction of two LysR-type regulatory proteins CatR and ClcR with helerologous promoters: functional anil evolutionary implications. Proc. Natl. Acad. Sci. USA 91:12393-12397.
    • (1994) Proc. Natl. Acad. Sci. USA , vol.91 , pp. 12393-12397
    • Parsek, M.R.1    McFall, S.M.2    Shinabarger, D.L.3    Chakrabarty, A.M.4
  • 29
    • 0025357079 scopus 로고
    • Organi- Zation and sequence analysis of the 2.4-diehlorophenol hydroxylase and dichlorocateehol osidative operons of plasmid pJP4
    • Perkins, E. J., M. P. Gordon, O. Caceres, and P. F. Lurquin. 1990. Organi- zation and sequence analysis of the 2.4-diehlorophenol hydroxylase and dichlorocateehol osidative operons of plasmid pJP4. J. Bacteriol. 172:2351-2359.
    • (1990) J. Bacteriol. , vol.172 , pp. 2351-2359
    • Perkins, E.J.1    Gordon, M.P.2    Caceres, O.3    Lurquin, P.F.4
  • 30
    • 0001853051 scopus 로고
    • Metabolism of 2,4-dichlorophenoxyacctic acid. 4-chloro-2-melhylphenoxy- Acetie acid and 2-methylphenoxyacelic acitl by Alcaligenes eutntphus JMP134
    • Pieper, D. H., W. Reineke, K.-H. Engesser, and H.-J. Knackmuss. 1988 Metabolism of 2,4-dichlorophenoxyacctic acid. 4-chloro-2-melhylphenoxy- acetie acid and 2-methylphenoxyacelic acitl by Alcaligenes eutntphus JMP134. Arch. Microbiol. 150:95-102.
    • (1988) Arch. Microbiol. , vol.150 , pp. 95-102
    • Pieper, D.H.1    Reineke, W.2    Engesser, K.-H.3    Knackmuss, H.-J.4
  • 31
    • 0024148746 scopus 로고
    • Microbial degradation of haloaromaties
    • Reineke, W., and H.-.J. Knaekmss. 1988. Microbial degradation of haloaromaties. Annu. Rev. Microbiol. 42:263-287.
    • (1988) Annu. Rev. Microbiol. , vol.42 , pp. 263-287
    • Reineke, W.1    Knaekmss, H.-J.2
  • 32
    • 0028865450 scopus 로고
    • CatM encodes a LysR-type transcriptional activator regulating catechol degradation in Acinetobacter calcoaceticus
    • Romero-Arroyo, C. E., M. A. Schell. G. L. Gaines III, and E. L. Neidle. 1995. catM encodes a LysR-type transcriptional activator regulating catechol degradation in Acinetobacter calcoaceticus. J. Bacteriol. 177:5891-5898.
    • (1995) J. Bacteriol. , vol.177 , pp. 5891-5898
    • Romero-Arroyo, C.E.1    Schell, M.A.2    Gaines III, G.L.3    Neidle, E.L.4
  • 33
    • 0023464708 scopus 로고
    • Vectors for selective expression of cloned DNAs by T7 RNA polymeiasc
    • Rosenberg, A. H., B. N. Lade, D. S. Chui, S. W. Lin, J. J. Dunn, and F. W. Studier. 1987. Vectors for selective expression of cloned DNAs by T7 RNA polymeiasc. Gene 56:125-135.
    • (1987) Gene , vol.56 , pp. 125-135
    • Rosenberg, A.H.1    Lade, B.N.2    Chui, D.S.3    Lin, S.W.4    Dunn, J.J.5    Studier, F.W.6
  • 34
    • 0025139202 scopus 로고
    • Nucleotide sequencing and characterization of Pseudomonas putida catR: A positive regulator of the catBC operon is a member of the LysR family
    • Rothniel, R. K., T. L. Aldrich, J. E. Houghton, W. M. Coco, L. N. Ornslon, and A. M. Chakrabarty. 1990. Nucleotide sequencing and characterization of Pseudomonas putida catR: a positive regulator of the catBC operon is a member of the LysR family, J. Bacteriol. 172:922-931.
    • (1990) J. Bacteriol. , vol.172 , pp. 922-931
    • Rothniel, R.K.1    Aldrich, T.L.2    Houghton, J.E.3    Coco, W.M.4    Ornslon, L.N.5    Chakrabarty, A.M.6
  • 37
    • 0027446708 scopus 로고
    • Molecular biology of the LysR family of transcriptional regulators
    • Schell, M. A. 1993. Molecular biology of the LysR family of transcriptional regulators. Annu. Rev Microbiol. 47:597-626.
    • (1993) Annu. Rev Microbiol. , vol.47 , pp. 597-626
    • Schell, M.A.1
  • 38
    • 0028708533 scopus 로고
    • Evolution of chloroeateehol catuholic pathways: Conclusions to be drawn from comparisons of lactone hydrolases
    • Schlömann, M. 1994. Evolution of chloroeateehol catuholic pathways: conclusions to be drawn from comparisons of lactone hydrolases. Biodegradation 5:301-321.
    • (1994) Biodegradation , vol.5 , pp. 301-321
    • Schlömann, M.1
  • 39
    • 0023104989 scopus 로고
    • Identification of transposable elements which activate gene expression in Pseudomonas cepacia
    • Scordili.s, G. E., H. Ree, and T. G. Lessie. 1987. Identification of transposable elements which activate gene expression in Pseudomonas cepacia. J. Bacteriol. 169:8-13.
    • (1987) J. Bacteriol. , vol.169 , pp. 8-13
    • Scordilis, G.E.1    Ree, H.2    Lessie, T.G.3
  • 40
    • 0023191349 scopus 로고
    • Analysis, cloning, and high-level expression ol 2.4-dichlorophcnoxyiicetate monooxygenase gene lfdA of Alcaligenes euirophus JMPI34
    • Streber, W. R., K. N. Tiinmis, and M. H. Zenk. 1987. Analysis, cloning, and high-level expression ol 2.4-dichlorophcnoxyiicetate monooxygenase gene lfdA of Alcaligenes euirophus JMPI34. J. Bacteriol. 169:2950-2955.
    • (1987) J. Bacteriol. , vol.169 , pp. 2950-2955
    • Streber, W.R.1    Tiinmis, K.N.2    Zenk, M.H.3
  • 41
    • 0023042283 scopus 로고
    • Use of haeteriophage T7 RNA polymerase to direct selective high-level expression of cloned genes
    • Studier, F. W., and B. A. Moffatt. 1986. Use of haeteriophage T7 RNA polymerase to direct selective high-level expression of cloned genes. J. Mol. Biol. 189:113-130.
    • (1986) J. Mol. Biol. , vol.189 , pp. 113-130
    • Studier, F.W.1    Moffatt, B.A.2
  • 44
    • 0025806414 scopus 로고
    • Sequence analysis of the Pseudomonas sp. strain P51 tcb gene cluster, which encodes metabolism of chlorinated catechols: Evidence for specialization of catechol 1.2-dioxygcnascs for chlorinated substrates
    • van der Meer, J. R., R. l. L. Eggen, A. J. B. Zehnder, and W. M. de Vos. 1991. Sequence analysis of the Pseudomonas sp. strain P51 tcb gene cluster, which encodes metabolism of chlorinated catechols: evidence for specialization of catechol 1.2-dioxygcnascs for chlorinated substrates. J. Bacteriol. 173:2425-2434.
    • (1991) J. Bacteriol. , vol.173 , pp. 2425-2434
    • Van der Meer, J.R.1    Eggen, R.L.L.2    Zehnder, A.J.B.3    De Vos, W.M.4
  • 45
    • 0025740524 scopus 로고
    • Characterization of the Pseitdomtmas sp. strain P51 gene ichR. a LysR-type transcriptional activator of the tcbCDEF chlorocateehol oxidative operon. and analysis of the regulatory region
    • van der Meer, J. R., A. C. J. Frijters, J. H. J. Leveau, R. I. L. Eggen, A. J. B. Zehnder, and W. M. de Vos. 1991. Characterization of the Pseitdomtmas sp. strain P51 gene ichR. a LysR-type transcriptional activator of the tcbCDEF chlorocateehol oxidative operon. and analysis of the regulatory region. J. Bacteriol. 173:3700-3708.
    • (1991) J. Bacteriol. , vol.173 , pp. 3700-3708
    • Van der Meer, J.R.1    Frijters, A.C.J.2    Leveau, J.H.J.3    Eggen, R.I.L.4    Zehnder, A.J.B.5    De Vos, W.M.6
  • 46
    • 0021943518 scopus 로고
    • Improved M13 phage cloning vectors and host strains: Nucleotide sequences of the M13mp18 and pUC19 vectors
    • Yanisch-Perron, C., J. Vieira, and J. Messing. 1985. Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors. Gene 33:103-119.
    • (1985) Gene , vol.33 , pp. 103-119
    • Yanisch-Perron, C.1    Vieira, J.2    Messing, J.3
  • 47
    • 85035182715 scopus 로고
    • Regulation of plasmid-borne 2,4-dichlorophenoxyacetate catabolic genes involves multiple regulatory genes
    • ahstr. H-118, American Society for Microbiology. Washington, D.C.
    • You, I.-S. 1992. Regulation of plasmid-borne 2,4-dichlorophenoxyacetate catabolic genes involves multiple regulatory genes, ahstr. H-118, p. 202. In Abstracts of the 92nd General Meeting of the American Society for Microbiology 1992. American Society for Microbiology. Washington, D.C.
    • (1992) Abstracts of the 92nd General Meeting of the American Society for Microbiology 1992 , pp. 202
    • You, I.-S.1
  • 48
    • 0028998460 scopus 로고
    • Genetic and molecular analysis of a regulatory region of the herbicide 2.4-dichlorophenoxyacetate catabolic plasmid PJP4
    • You, I. S., and D. Ghosal. 1995. Genetic and molecular analysis of a regulatory region of the herbicide 2.4-dichlorophenoxyacetate catabolic plasmid PJP4. Mol. Microbiol. 16:321-331.
    • (1995) Mol. Microbiol. , vol.16 , pp. 321-331
    • You, I.S.1    Ghosal, D.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.