-
1
-
-
0029884694
-
GOR method for predicting protein secondary structure from amino acid sequence
-
Garnier, J., Gibrat, J.F. & Robson, B. (1996). GOR method for predicting protein secondary structure from amino acid sequence. Methods Enzymol. 266, 540-553.
-
(1996)
Methods Enzymol.
, vol.266
, pp. 540-553
-
-
Garnier, J.1
Gibrat, J.F.2
Robson, B.3
-
2
-
-
0023555768
-
Further developments of protein secondary structure prediction using information theory
-
Gibrat, J., Garnier, J. & Robson, B. (1987). Further developments of protein secondary structure prediction using information theory. J. Mol. Biol. 198, 425-443.
-
(1987)
J. Mol. Biol.
, vol.198
, pp. 425-443
-
-
Gibrat, J.1
Garnier, J.2
Robson, B.3
-
3
-
-
0029889988
-
PHD: Predicting one-dimensional protein secondary structure by profile-based neural networks
-
Rost, B. (1996). PHD: predicting one-dimensional protein secondary structure by profile-based neural networks. Methods Enzymol. 266, 525-539.
-
(1996)
Methods Enzymol.
, vol.266
, pp. 525-539
-
-
Rost, B.1
-
4
-
-
0026716833
-
Jury returns on structure prediction
-
Rost, B. & Sander, C. (1992). Jury returns on structure prediction. Nature 360, 540.
-
(1992)
Nature
, vol.360
, pp. 540
-
-
Rost, B.1
Sander, C.2
-
5
-
-
0027291015
-
Prediction of protein secondary structure at better than 70% accuracy
-
Rost, B. & Sander, C. (1993). Prediction of protein secondary structure at better than 70% accuracy. J. Mol. Biol. 232, 584-599.
-
(1993)
J. Mol. Biol.
, vol.232
, pp. 584-599
-
-
Rost, B.1
Sander, C.2
-
6
-
-
0026497463
-
Correct structure prediction?
-
Benner, S.A., Cohen, M.A. & Gerloff, D. (1992). Correct structure prediction? Nature 359, 781.
-
(1992)
Nature
, vol.359
, pp. 781
-
-
Benner, S.A.1
Cohen, M.A.2
Gerloff, D.3
-
7
-
-
0027943361
-
Predicting protein crystal structures
-
Benner, S.A., Gerloff, D.L & Jenny, T.F. (1994). Predicting protein crystal structures. Science 265, 1642-1644.
-
(1994)
Science
, vol.265
, pp. 1642-1644
-
-
Benner, S.A.1
Gerloff, D.L.2
Jenny, T.F.3
-
8
-
-
0027225292
-
Predicting the conformation of proteins. Man versus machine
-
Benner, S.A. & Gerloff, D.L. (1993). Predicting the conformation of proteins. Man versus machine. FEBS Lett. 325, 29-33.
-
(1993)
FEBS Lett.
, vol.325
, pp. 29-33
-
-
Benner, S.A.1
Gerloff, D.L.2
-
9
-
-
0028685328
-
GeneQuiz: A workbench for sequence analysis
-
AAAI Press, Menlo Park, California
-
Scharf, M., et al., & Sander, C. (1994). GeneQuiz: a workbench for sequence analysis. In Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology. pp. 348-353, AAAI Press, Menlo Park, California.
-
(1994)
Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology
, pp. 348-353
-
-
Scharf, M.1
Sander, C.2
-
10
-
-
0029144085
-
Challenging times for bioinformatics
-
Casari, G., et al., & Sander, C. (1995). Challenging times for bioinformatics. Nature 376, 647-648.
-
(1995)
Nature
, vol.376
, pp. 647-648
-
-
Casari, G.1
Sander, C.2
-
11
-
-
0028882241
-
New protein functions in yeast chromosome VIII
-
Ouzounis, C., Bork, P., Casari, G. & Sander, C. (1995). New protein functions in yeast chromosome VIII. Protein Sci. 4, 2424-2428.
-
(1995)
Protein Sci.
, vol.4
, pp. 2424-2428
-
-
Ouzounis, C.1
Bork, P.2
Casari, G.3
Sander, C.4
-
12
-
-
0030837927
-
Are there dominant membrane protein families with a given number of helices?
-
Arkin, I., Brunger, A. & Engelman, D. (1997). Are there dominant membrane protein families with a given number of helices? Proteins 28, 465-466.
-
(1997)
Proteins
, vol.28
, pp. 465-466
-
-
Arkin, I.1
Brunger, A.2
Engelman, D.3
-
13
-
-
0027183678
-
How many yeast genes code for membrane-spanning proteins?
-
Goffeau, A., Slonimski, P., Nakai, K. & Risler, J.L (1993). How many yeast genes code for membrane-spanning proteins? Yeast 9, 691-702.
-
(1993)
Yeast
, vol.9
, pp. 691-702
-
-
Goffeau, A.1
Slonimski, P.2
Nakai, K.3
Risler, J.L.4
-
14
-
-
0028902788
-
Prediction of helical transmembrane segments at 95% accuracy
-
Rost, B., Fariselli, P., Casadio, R. & Sander, C. (1995). Prediction of helical transmembrane segments at 95% accuracy. Protein Sci. 4, 521-533.
-
(1995)
Protein Sci.
, vol.4
, pp. 521-533
-
-
Rost, B.1
Fariselli, P.2
Casadio, R.3
Sander, C.4
-
15
-
-
0030038634
-
Topology prediction for helical transmembrane segments at 95% accuracy
-
Rost, B., Fariselli, P. & Casadio, R. (1996). Topology prediction for helical transmembrane segments at 95% accuracy. Protein Sci. 7, 1704-1718.
-
(1996)
Protein Sci.
, vol.7
, pp. 1704-1718
-
-
Rost, B.1
Fariselli, P.2
Casadio, R.3
-
16
-
-
0031892162
-
How many membrane proteins are there?
-
Boyd, D., Schierle, C. & Beckwith, J. (1998). How many membrane proteins are there? Protein Sci. 7, 201-205.
-
(1998)
Protein Sci.
, vol.7
, pp. 201-205
-
-
Boyd, D.1
Schierle, C.2
Beckwith, J.3
-
17
-
-
0030014818
-
Similarities and dissimilarities of phage genomes
-
Blaisdell, B.E., Campbell, A.M. & Karlin, S. (1996). Similarities and dissimilarities of phage genomes. Proc. Natl Acad. Sci. USA 93, 5854-5859.
-
(1996)
Proc. Natl Acad. Sci. USA
, vol.93
, pp. 5854-5859
-
-
Blaisdell, B.E.1
Campbell, A.M.2
Karlin, S.3
-
18
-
-
0029060923
-
Dinucleotide relative abundance extremes: A genomic signature
-
Karlin, S. & Burge, C. (1995). Dinucleotide relative abundance extremes: a genomic signature. Trends Genet. 11, 283-290.
-
(1995)
Trends Genet.
, vol.11
, pp. 283-290
-
-
Karlin, S.1
Burge, C.2
-
19
-
-
0026600016
-
Statistical analyses of counts and distributions of restriction sites in DNA sequences
-
Karlin, S., Burge, C. & Campbell, A.M. (1992). Statistical analyses of counts and distributions of restriction sites in DNA sequences. Nucleic Acids Res. 20, 1363-1370.
-
(1992)
Nucleic Acids Res.
, vol.20
, pp. 1363-1370
-
-
Karlin, S.1
Burge, C.2
Campbell, A.M.3
-
20
-
-
10344260141
-
Frequent oligonucleotides and peptides of the haemophilus influenzae genome
-
Karlin, S., Mrazek, J. & Campbell, A.M. (1996). Frequent oligonucleotides and peptides of the haemophilus influenzae genome. Nucleic Acids Res. 24, 4263-4272.
-
(1996)
Nucleic Acids Res.
, vol.24
, pp. 4263-4272
-
-
Karlin, S.1
Mrazek, J.2
Campbell, A.M.3
-
21
-
-
0030720480
-
A structural census of the current population of protein sequences
-
Gerstein, M. & Levitt, M. (1997). A structural census of the current population of protein sequences. Proc. Natl. Acad. Sci. USA 94, 11911-11916.
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 11911-11916
-
-
Gerstein, M.1
Levitt, M.2
-
22
-
-
0031565915
-
A structural census of genomes: Comparing eukaryotic, bacterial and archaeal genomes in terms of protein structure
-
Gerstein, M. (1997). A structural census of genomes: comparing eukaryotic, bacterial and archaeal genomes in terms of protein structure. J. Mol. Biol. 274, 562-576.
-
(1997)
J. Mol. Biol.
, vol.274
, pp. 562-576
-
-
Gerstein, M.1
-
23
-
-
0031734751
-
Comparing microbial genomes in terms of protein structure: Surveys of a finite parts list
-
in press
-
Gerstein, M. & Hegyi, H. (1998). Comparing microbial genomes in terms of protein structure: surveys of a finite parts list. FEMS Microbiol. Rev., in press.
-
(1998)
FEMS Microbiol. Rev.
-
-
Gerstein, M.1
Hegyi, H.2
-
24
-
-
0032387685
-
Patterns of protein-fold usage in eight microbial genomes: A comprehensive structural census
-
Gerstein, M. (1998). Patterns of protein-fold usage in eight microbial genomes: a comprehensive structural census. Proteins, 33, 518-534.
-
(1998)
Proteins
, vol.33
, pp. 518-534
-
-
Gerstein, M.1
-
26
-
-
0028289467
-
Issues in searching molecular sequence databases
-
Altschul, S.F., Boguski, M.S., Gish, W. & Wootton, J.C. (1994). Issues in searching molecular sequence databases. Nat. Genet 6, 119-129.
-
(1994)
Nat. Genet
, vol.6
, pp. 119-129
-
-
Altschul, S.F.1
Boguski, M.S.2
Gish, W.3
Wootton, J.C.4
-
27
-
-
0032568649
-
A unified statistical framework for sequence comparison and structure comparison
-
Levitt, M. & Gerstein, M. (1998). A unified statistical framework for sequence comparison and structure comparison. Proc. Natl Acad. Sci. USA 95, 5913-5920.
-
(1998)
Proc. Natl Acad. Sci. USA
, vol.95
, pp. 5913-5920
-
-
Levitt, M.1
Gerstein, M.2
-
28
-
-
0030983386
-
Population statistics of protein structures: Lessons from structural classifications
-
Brenner, S.E., Chothia, C. & Hubbard, T.J. (1997). Population statistics of protein structures: lessons from structural classifications. Curr. Opin. Struct. Biol. 7, 369-376.
-
(1997)
Curr. Opin. Struct. Biol.
, vol.7
, pp. 369-376
-
-
Brenner, S.E.1
Chothia, C.2
Hubbard, T.J.3
-
29
-
-
0017309766
-
Structural patterns in globular proteins
-
Levitt, M. & Chothia, C. (1976). Structural patterns in globular proteins. Nature 261, 552-558.
-
(1976)
Nature
, vol.261
, pp. 552-558
-
-
Levitt, M.1
Chothia, C.2
-
30
-
-
0029922493
-
Foldons, protein structural modules, and exons
-
Panchenko, A.R., Luthey-Schulten, Z. & Wolynes, P.G. (1996). Foldons, protein structural modules, and exons. Proc. Natl Acad. Sci. USA 93, 2008-2013.
-
(1996)
Proc. Natl Acad. Sci. USA
, vol.93
, pp. 2008-2013
-
-
Panchenko, A.R.1
Luthey-Schulten, Z.2
Wolynes, P.G.3
-
31
-
-
0030844281
-
Recombination of protein domains facilitated by co-translational folding in eukaryotes
-
Netzer, W.J. & Haitl, F.U. (1997). Recombination of protein domains facilitated by co-translational folding in eukaryotes. Nature 388, 343-349.
-
(1997)
Nature
, vol.388
, pp. 343-349
-
-
Netzer, W.J.1
Haitl, F.U.2
-
32
-
-
0031021210
-
Biology's new Rosetta stone
-
Das, S., et al., & Lindelien, J. (1997). Biology's new Rosetta stone. Nature 385, 29-30.
-
(1997)
Nature
, vol.385
, pp. 29-30
-
-
Das, S.1
Lindelien, J.2
-
33
-
-
0024046505
-
An investigation of protein subunit and domain interfaces
-
Argos, P. (1988). An investigation of protein subunit and domain interfaces. Protein Eng. 2, 101-113.
-
(1988)
Protein Eng.
, vol.2
, pp. 101-113
-
-
Argos, P.1
-
34
-
-
0028055018
-
The winds of (evolutionary) change: Breathing new life into microbiology
-
Olsen, G.J., Woese, C.R. & Overbeek, R. (1994). The winds of (evolutionary) change: breathing new life into microbiology. J. Bacteriol. 176, 1-6.
-
(1994)
J. Bacteriol.
, vol.176
, pp. 1-6
-
-
Olsen, G.J.1
Woese, C.R.2
Overbeek, R.3
-
35
-
-
0030113436
-
Sequencing and analysis of bacterial genomes
-
Koonin, E.V., Mushegian, A.R. & Rudd, K.E. (1996). Sequencing and analysis of bacterial genomes. Curr. Biol. 6, 404-416.
-
(1996)
Curr. Biol.
, vol.6
, pp. 404-416
-
-
Koonin, E.V.1
Mushegian, A.R.2
Rudd, K.E.3
-
36
-
-
0004028073
-
-
McGraw-Hill, New York
-
Lansing, P., Prescott, M., Harley, J.P. & Klein, D.A. (1996). Microbiology 3rd Ed. McGraw-Hill, New York.
-
(1996)
Microbiology 3rd Ed
-
-
Lansing, P.1
Prescott, M.2
Harley, J.P.3
Klein, D.A.4
-
37
-
-
0030835739
-
The complete genome sequence of the gastric pathogen Helicobacter pylori
-
Tomb, J.-F., et al., & Venter, J.C. (1997). The complete genome sequence of the gastric pathogen Helicobacter pylori. Nature 388, 539-547.
-
(1997)
Nature
, vol.388
, pp. 539-547
-
-
Tomb, J.-F.1
Venter, J.C.2
-
38
-
-
0030838058
-
A bug with excess gastric acidity
-
Doolittle, R.F. (1997). A bug with excess gastric acidity. Nature 388, 515-516.
-
(1997)
Nature
, vol.388
, pp. 515-516
-
-
Doolittle, R.F.1
-
39
-
-
0001514262
-
Statistics of local complexity in amino acid sequences and sequence databases
-
Wootton, J.C. & Federhen, S. (1993). Statistics of local complexity in amino acid sequences and sequence databases. Comput. Chem. 17, 149-163.
-
(1993)
Comput. Chem.
, vol.17
, pp. 149-163
-
-
Wootton, J.C.1
Federhen, S.2
-
40
-
-
0029901640
-
Analysis of compositionally biased regions in sequence databases
-
Wootton, J.C. & Federhen, S. (1996). Analysis of compositionally biased regions in sequence databases. Methods Enzymol. 266, 554-571.
-
(1996)
Methods Enzymol.
, vol.266
, pp. 554-571
-
-
Wootton, J.C.1
Federhen, S.2
-
41
-
-
0027438949
-
Domain closure in lactoferrin: Two hinges produce a see-saw motion between alternative close-packed interfaces
-
Gerstein, M., Lesk, A.M., Baker, E.N., Anderson, B., Norris, G. & Chothia, C. (1993). Domain closure in lactoferrin: two hinges produce a see-saw motion between alternative close-packed interfaces. J. Mol. Biol. 234, 357-372.
-
(1993)
J. Mol. Biol.
, vol.234
, pp. 357-372
-
-
Gerstein, M.1
Lesk, A.M.2
Baker, E.N.3
Anderson, B.4
Norris, G.5
Chothia, C.6
-
42
-
-
0032530836
-
A database of macromolecular movements
-
Gerstein, M. & Krebs, W. (1998). A database of macromolecular movements. Nucleic Acids Res. 26, 4280-4290.
-
(1998)
Nucleic Acids Res.
, vol.26
, pp. 4280-4290
-
-
Gerstein, M.1
Krebs, W.2
-
43
-
-
0026331041
-
Molecular architecture and electrostatic properties of a bacterial porin
-
Weiss, M.S., Abele, U., Weckesser, J., Welte, W., Schiltz, E. & Schulz, G.E. (1991). Molecular architecture and electrostatic properties of a bacterial porin. Science 254, 1627-1630.
-
(1991)
Science
, vol.254
, pp. 1627-1630
-
-
Weiss, M.S.1
Abele, U.2
Weckesser, J.3
Welte, W.4
Schiltz, E.5
Schulz, G.E.6
-
44
-
-
0026311694
-
Statistical data analysis in the computer age
-
Efron, B. & Tibshirani, R. (1991). Statistical data analysis in the computer age. Science 253, 390-395.
-
(1991)
Science
, vol.253
, pp. 390-395
-
-
Efron, B.1
Tibshirani, R.2
-
45
-
-
0026716643
-
Membrane protein structure prediction. Hydrophobicity analysis and the positive-inside rule
-
von Heijne, G. (1992). Membrane protein structure prediction. Hydrophobicity analysis and the positive-inside rule. J. Mol. Biol. 225, 487-494.
-
(1992)
J. Mol. Biol.
, vol.225
, pp. 487-494
-
-
Von Heijne, G.1
-
46
-
-
0028304680
-
Membrane proteins: From sequence to structure
-
von Heijne, G. (1994). Membrane proteins: from sequence to structure. Annu. Rev. Biophys. Biomol. Struct. 23, 167-192.
-
(1994)
Annu. Rev. Biophys. Biomol. Struct.
, vol.23
, pp. 167-192
-
-
Von Heijne, G.1
-
47
-
-
0031954925
-
Genome-wide analysis of integral membrane proteins from eubacterial, archaean, and eukaryotic organisms
-
Wallin, E. & von Heijne, G. (1998). Genome-wide analysis of integral membrane proteins from eubacterial, archaean, and eukaryotic organisms. Protein Sci. 7, 1029-1038.
-
(1998)
Protein Sci.
, vol.7
, pp. 1029-1038
-
-
Wallin, E.1
Von Heijne, G.2
-
48
-
-
0030847766
-
Protein Data Bank archives of three-dimensional macromolecular structures
-
Abola, E., Sussman, J., Prilusky, J. & Manning, N. (1997). Protein Data Bank archives of three-dimensional macromolecular structures. Methods Enzymol. 277, 556-571.
-
(1997)
Methods Enzymol.
, vol.277
, pp. 556-571
-
-
Abola, E.1
Sussman, J.2
Prilusky, J.3
Manning, N.4
-
49
-
-
0029637588
-
PDBbrowse - A graphics interface to the Brookhaven Protein Data Bank
-
Stampf, D.R., Felder, C.E. & Sussman, J.L (1995). PDBbrowse - a graphics interface to the Brookhaven Protein Data Bank. Nature 374, 572-574.
-
(1995)
Nature
, vol.374
, pp. 572-574
-
-
Stampf, D.R.1
Felder, C.E.2
Sussman, J.L.3
-
50
-
-
0028961335
-
SCOP: A structural classification of proteins for the investigation of sequences and structures
-
Murzin, A., Brenner, S.E., Hubbard, T. & Chothia, C. (1995). SCOP: a structural classification of proteins for the investigation of sequences and structures. J. Mol. Biol. 247, 536-540.
-
(1995)
J. Mol. Biol.
, vol.247
, pp. 536-540
-
-
Murzin, A.1
Brenner, S.E.2
Hubbard, T.3
Chothia, C.4
-
51
-
-
84988046589
-
Gene duplication in H. influenzae
-
Brenner, S., Hubbard, T., Murzin, A. & Chothia, C. (1995). Gene duplication in H. influenzae. Nature 378, 140.
-
(1995)
Nature
, vol.378
, pp. 140
-
-
Brenner, S.1
Hubbard, T.2
Murzin, A.3
Chothia, C.4
-
52
-
-
0030792253
-
SCOP: A structural classification of proteins database
-
Hubbard, T.J.P., Murzin, A.G., Brenner, S.E. & Chothia, C. (1997). SCOP: a structural classification of proteins database. Nucleic Acids Res. 25, 236-239.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 236-239
-
-
Hubbard, T.J.P.1
Murzin, A.G.2
Brenner, S.E.3
Chothia, C.4
-
53
-
-
0028716457
-
Finding an average core structure: Application to the globins
-
AAAI Press, Menlo Park, CA
-
Altman, R. & Gerstein, M. (1994). Finding an average core structure: application to the globins. In Proceedings of the Second International Conference on Intelligent Systems in Molecular Biology, pp. 19-27, AAAI Press, Menlo Park, CA.
-
(1994)
Proceedings of the Second International Conference on Intelligent Systems in Molecular Biology
, pp. 19-27
-
-
Altman, R.1
Gerstein, M.2
-
54
-
-
0029091249
-
Average core structures and variability measures for protein families: Application to the immunoglobulins
-
Gerstein, M. & Altman, R. (1995). Average core structures and variability measures for protein families: application to the immunoglobulins. J. Mol. Biol. 251, 161-175.
-
(1995)
J. Mol. Biol.
, vol.251
, pp. 161-175
-
-
Gerstein, M.1
Altman, R.2
-
55
-
-
0030339935
-
Using iterative dynamic programming to obtain accurate pairwise and multiple alignments of protein structures
-
AAAI Press, Menlo Park, CA
-
Gerstein, M. & Levitt, M. (1996). Using iterative dynamic programming to obtain accurate pairwise and multiple alignments of protein structures. In Proc. Fourth Int. Conf. on Intell. Sys. Mol. Biol. pp. 59-67, AAAI Press, Menlo Park, CA.
-
(1996)
Proc. Fourth Int. Conf. on Intell. Sys. Mol. Biol.
, pp. 59-67
-
-
Gerstein, M.1
Levitt, M.2
-
56
-
-
0031938039
-
Comprehensive assessment of automatic structural alignment against a manual standard, the Scop classification of proteins
-
Gerstein, M. & Levitt, M. (1998). Comprehensive assessment of automatic structural alignment against a manual standard, the Scop classification of proteins. Protein Sci. 7, 445-456.
-
(1998)
Protein Sci.
, vol.7
, pp. 445-456
-
-
Gerstein, M.1
Levitt, M.2
-
57
-
-
0004207406
-
-
O'Reilly and Associates, Sebastapol, CA
-
Wall, L., Christiansen, D. & Schwartz, R. (1996). Programming Perl. O'Reilly and Associates, Sebastapol, CA.
-
(1996)
Programming Perl
-
-
Wall, L.1
Christiansen, D.2
Schwartz, R.3
-
58
-
-
0029828166
-
Fully automated genome analysis that reflects user needs and preferences. a detailed introduction to the MAGPIE system architecture
-
Gaasterland, T. & Sensen, C.W. (1996). Fully automated genome analysis that reflects user needs and preferences. A detailed introduction to the MAGPIE system architecture. Biochimie 78, 302-310.
-
(1996)
Biochimie
, vol.78
, pp. 302-310
-
-
Gaasterland, T.1
Sensen, C.W.2
-
59
-
-
0345130783
-
Analysis of a Bacillus subtilis genome fragment using a co-operative computer system prototype
-
Medigue, C., Moszer, I., Viari, A. & Danchin, A. (1995). Analysis of a Bacillus subtilis genome fragment using a co-operative computer system prototype. Gene 165, GC37-51.
-
(1995)
Gene
, vol.165
-
-
Medigue, C.1
Moszer, I.2
Viari, A.3
Danchin, A.4
-
60
-
-
0021919480
-
Rapid and sensitive protein similarity searches
-
Lipman, D.J. & Pearson, W.R. (1985). Rapid and sensitive protein similarity searches. Science 227, 1435-1441.
-
(1985)
Science
, vol.227
, pp. 1435-1441
-
-
Lipman, D.J.1
Pearson, W.R.2
-
61
-
-
0023989064
-
Improved tools for biological sequence analysis
-
Pearson, W.R. & Lipman, D.J. (1988). Improved tools for biological sequence analysis. Proc. Natl Acad. Sci. USA 85, 2444-2448.
-
(1988)
Proc. Natl Acad. Sci. USA
, vol.85
, pp. 2444-2448
-
-
Pearson, W.R.1
Lipman, D.J.2
-
62
-
-
0032568596
-
Assessing sequence comparison methods with reliable structurally identified distant evolutionary relationships
-
Brenner, S., Chothia, C. & Hubbard, T. (1998). Assessing sequence comparison methods with reliable structurally identified distant evolutionary relationships. Proc. Natl Acad. Sci. USA 95, 6073-6078.
-
(1998)
Proc. Natl Acad. Sci. USA
, vol.95
, pp. 6073-6078
-
-
Brenner, S.1
Chothia, C.2
Hubbard, T.3
-
63
-
-
0032512799
-
Empirical statistical estimates for sequence similarity searches
-
Pearson, W.R. (1998). Empirical statistical estimates for sequence similarity searches. J. Mol. Biol. 276, 71-84.
-
(1998)
J. Mol. Biol.
, vol.276
, pp. 71-84
-
-
Pearson, W.R.1
-
64
-
-
0029933671
-
Effective protein sequence comparison
-
Pearson, W.R. (1996). Effective protein sequence comparison. Methods Enzymol. 266, 227-259.
-
(1996)
Methods Enzymol.
, vol.266
, pp. 227-259
-
-
Pearson, W.R.1
-
65
-
-
0030776390
-
Identifying distantly related protein sequences
-
Pearson, W.R. (1997). Identifying distantly related protein sequences. Comput. Appl. Biosci. 13, 325-332.
-
(1997)
Comput. Appl. Biosci.
, vol.13
, pp. 325-332
-
-
Pearson, W.R.1
-
66
-
-
0031762837
-
Measurement of the effectiveness of transitive sequence comparison, through a third 'intermediate' sequence
-
Gerstein, M. (1998). Measurement of the effectiveness of transitive sequence comparison, through a third 'intermediate' sequence. Bioinformatics 14, 707-714.
-
(1998)
Bioinformatics
, vol.14
, pp. 707-714
-
-
Gerstein, M.1
-
67
-
-
0019887799
-
Identification of common molecular subsequences
-
Smith, T.F. & Waterman, M.S. (1981). Identification of common molecular subsequences. J. Mol. Biol. 147, 195-197.
-
(1981)
J. Mol. Biol.
, vol.147
, pp. 195-197
-
-
Smith, T.F.1
Waterman, M.S.2
-
69
-
-
0028091659
-
Detection of conserved segments in proteins: Iterative scanning of sequence databases with alignment blocks
-
Tatusov, R.L., Altschul, S.F. & Koonin, EV. (1994). Detection of conserved segments in proteins: iterative scanning of sequence databases with alignment blocks. Proc. Natl Acad. Sci. USA 91, 12091-12095.
-
(1994)
Proc. Natl Acad. Sci. USA
, vol.91
, pp. 12091-12095
-
-
Tatusov, R.L.1
Altschul, S.F.2
Koonin, E.V.3
-
71
-
-
0029047319
-
Prediction of protein folding class using global description of amino acid sequence
-
Dubchak, I., Muchnik, I., Holbrook, S.R. & Kim, S.H. (1995). Prediction of protein folding class using global description of amino acid sequence. Proc. Natl Acad. Sci. USA 92, 8700-8704.
-
(1995)
Proc. Natl Acad. Sci. USA
, vol.92
, pp. 8700-8704
-
-
Dubchak, I.1
Muchnik, I.2
Holbrook, S.R.3
Kim, S.H.4
-
72
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul, S.F., et al., & Lipman, D.J. (1997). Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25, 3389-3402.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Lipman, D.J.2
-
73
-
-
85030342943
-
Structural assignments to the proteins of Mycoplasma genitalium show that they have been formed by extensive gene duplications and domain rearrangements
-
in press
-
Teichmann, S., Park, J. & Chothia, C. (1998). Structural assignments to the proteins of Mycoplasma genitalium show that they have been formed by extensive gene duplications and domain rearrangements. Proc. Natl Acad. Sci. USA, in press.
-
(1998)
Proc. Natl Acad. Sci. USA
-
-
Teichmann, S.1
Park, J.2
Chothia, C.3
-
74
-
-
0027092678
-
Selection of a representative set of structures from the Brookhaven Protein Data Bank
-
Hobohm, U., Scharf, M., Schneider, R. & Sander, C. (1992). Selection of a representative set of structures from the Brookhaven Protein Data Bank. Protein Sci. 1, 409-417.
-
(1992)
Protein Sci.
, vol.1
, pp. 409-417
-
-
Hobohm, U.1
Scharf, M.2
Schneider, R.3
Sander, C.4
-
75
-
-
0026661145
-
Selection of a representative set of structures from Brookhaven Protein Data Bank
-
Boberg, J., Salakoski, T. & Vihinen, M. (1992). Selection of a representative set of structures from Brookhaven Protein Data Bank. Proteins 14, 265-276.
-
(1992)
Proteins
, vol.14
, pp. 265-276
-
-
Boberg, J.1
Salakoski, T.2
Vihinen, M.3
-
78
-
-
0022510143
-
Identifying nonpolar transbilayer helices in amino acid sequences of membrane proteins
-
Engelman, D.M., Steitz, T.A. & Goldman, A. (1986). Identifying nonpolar transbilayer helices in amino acid sequences of membrane proteins. Annu. Rev. Biophys. Biophysical Chem. 15, 321-353.
-
(1986)
Annu. Rev. Biophys. Biophysical Chem.
, vol.15
, pp. 321-353
-
-
Engelman, D.M.1
Steitz, T.A.2
Goldman, A.3
-
79
-
-
0028501914
-
Non-globular domains in protein sequences: Automated segmentation using complexity measures
-
Wootton, J.C. (1994). Non-globular domains in protein sequences: automated segmentation using complexity measures. Comput. Chem. 18, 269-285.
-
(1994)
Comput. Chem.
, vol.18
, pp. 269-285
-
-
Wootton, J.C.1
-
80
-
-
0030879154
-
PEDANTic genome analysis
-
Frishman, D. & Mewes, H.-W. (1997). PEDANTic genome analysis. Trends Genet. 13, 415-416.
-
(1997)
Trends Genet.
, vol.13
, pp. 415-416
-
-
Frishman, D.1
Mewes, H.-W.2
-
81
-
-
0017873321
-
Analysis of the accuracy and implications of simple methods for predicting the secondary structure of globular proteins
-
Gamier, J., Osguthorpe, D. & Robson, B. (1978). Analysis of the accuracy and implications of simple methods for predicting the secondary structure of globular proteins. J. Mol. Biol. 120, 97-120.
-
(1978)
J. Mol. Biol.
, vol.120
, pp. 97-120
-
-
Gamier, J.1
Osguthorpe, D.2
Robson, B.3
-
82
-
-
0029804192
-
Identification and application of the concepts important for accurate and reliable protein secondary structure prediction
-
King, R.D. & Sternberg, M.J.E. (1996). Identification and application of the concepts important for accurate and reliable protein secondary structure prediction. Protein Sci. 5, 2298-2310.
-
(1996)
Protein Sci.
, vol.5
, pp. 2298-2310
-
-
King, R.D.1
Sternberg, M.J.E.2
-
83
-
-
0030038634
-
Topology prediction for helical transmembrane proteins at 86% accuracy
-
Rost, B., Fariselli, P. & Casadio, R. (1996). Topology prediction for helical transmembrane proteins at 86% accuracy. Protein Sci. 5, 1704-1718.
-
(1996)
Protein Sci.
, vol.5
, pp. 1704-1718
-
-
Rost, B.1
Fariselli, P.2
Casadio, R.3
-
84
-
-
0028965118
-
Prediction of protein secondary structure by combining nearest-neighbor algorithms and multiple sequence alignments
-
Salamov, A. & Solovyev, V. (1995). Prediction of protein secondary structure by combining nearest-neighbor algorithms and multiple sequence alignments. J. Mol. Biol. 247, 11-15.
-
(1995)
J. Mol. Biol.
, vol.247
, pp. 11-15
-
-
Salamov, A.1
Solovyev, V.2
-
85
-
-
0027270159
-
Prediction of protein folding class from amino acid composition
-
Dubchak, I., Holbrook, S.R. & Kim, S.H. (1993). Prediction of protein folding class from amino acid composition. Proteins 16, 79-91.
-
(1993)
Proteins
, vol.16
, pp. 79-91
-
-
Dubchak, I.1
Holbrook, S.R.2
Kim, S.H.3
-
86
-
-
0027217392
-
Cross-validation of protein structural class prediction using statistical clustering and neural networks
-
Metfessel, B.A., Saurugger, P.N., Connelly, D.P. & Rich, S.S. (1993). Cross-validation of protein structural class prediction using statistical clustering and neural networks. Protein Sci. 2, 1171-1182.
-
(1993)
Protein Sci.
, vol.2
, pp. 1171-1182
-
-
Metfessel, B.A.1
Saurugger, P.N.2
Connelly, D.P.3
Rich, S.S.4
-
87
-
-
0029653518
-
Whole-genome random sequencing and assembly of haemophilus influenzae rd
-
Fleischmann, R.D., et al., & Venter, J.C. (1995). Whole-genome random sequencing and assembly of haemophilus influenzae rd. Science 269, 496-512.
-
(1995)
Science
, vol.269
, pp. 496-512
-
-
Fleischmann, R.D.1
Venter, J.C.2
-
88
-
-
0028829125
-
The minimal gene complement of Mycoplasma genitalium
-
Fraser, C.M., et al., & Venter, J.C. (1995). The minimal gene complement of Mycoplasma genitalium. Science 270, 397-403.
-
(1995)
Science
, vol.270
, pp. 397-403
-
-
Fraser, C.M.1
Venter, J.C.2
-
89
-
-
16044367245
-
Complete genome sequence of the methanogenic archaeon, Methanococcus jannaschii
-
Bult, C.J., et al., & Venter J.C. (1996). Complete genome sequence of the methanogenic archaeon, Methanococcus jannaschii. Science 273, 1058-1073.
-
(1996)
Science
, vol.273
, pp. 1058-1073
-
-
Bult, C.J.1
Venter, J.C.2
-
90
-
-
0030606607
-
Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions
-
Kaneko, T., et al., & Tabata, S. (1996). Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions. DNA Res. 3, 109-136.
-
(1996)
DNA Res.
, vol.3
, pp. 109-136
-
-
Kaneko, T.1
Tabata, S.2
-
91
-
-
10544255079
-
Complete sequence analysis of the genome of the bacterium Mycoplasma pneumoniae
-
Himmelreich, R., Hilbert, H., Plagens, H., Pirkl, E., Li, B.C. & Herrmann, R. (1996). Complete sequence analysis of the genome of the bacterium Mycoplasma pneumoniae. Nucleic Acids Res. 24, 4420-4449.
-
(1996)
Nucleic Acids Res.
, vol.24
, pp. 4420-4449
-
-
Himmelreich, R.1
Hilbert, H.2
Plagens, H.3
Pirkl, E.4
Li, B.C.5
Herrmann, R.6
-
92
-
-
0031589946
-
The yeast genome directory
-
Goffeau, A., et al., & Zumstein, E. (1997). The yeast genome directory. Nature 387 (suppl), 5-105.
-
(1997)
Nature
, vol.387
, Issue.SUPPL.
, pp. 5-105
-
-
Goffeau, A.1
Zumstein, E.2
-
93
-
-
15444350252
-
The complete genome sequence of Escherichia coli K-12
-
Blattner, F.R., et al., & Shao, Y. (1997). The complete genome sequence of Escherichia coli K-12. Science 277, 1453-1462.
-
(1997)
Science
, vol.277
, pp. 1453-1462
-
-
Blattner, F.R.1
Shao, Y.2
-
94
-
-
0028222235
-
Helix propensities of the amino acids measured in alanine-based peptides without helix-stabilizing side-chain interactions
-
Chakrabartty, A., Kortemme, T. & Baldwin, R.L. (1994). Helix propensities of the amino acids measured in alanine-based peptides without helix-stabilizing side-chain interactions. Protein Sci. 3, 843-852.
-
(1994)
Protein Sci.
, vol.3
, pp. 843-852
-
-
Chakrabartty, A.1
Kortemme, T.2
Baldwin, R.L.3
-
95
-
-
0028175780
-
A thermodynamic scale for the beta-sheet forming tendencies of the amino acids
-
Smith, C.K., Withka, J.M. & Regan, L. (1994). A thermodynamic scale for the beta-sheet forming tendencies of the amino acids. Biochemistry 33, 5510-5517.
-
(1994)
Biochemistry
, vol.33
, pp. 5510-5517
-
-
Smith, C.K.1
Withka, J.M.2
Regan, L.3
-
96
-
-
0003474751
-
-
Cambridge University Press, Cambridge
-
Press, W.H., Flannery, B.P., Teukolsky, S.A. & Vetterling, W.T. (1992). Numerical Recipes in C. Cambridge University Press, Cambridge.
-
(1992)
Numerical Recipes in C
-
-
Press, W.H.1
Flannery, B.P.2
Teukolsky, S.A.3
Vetterling, W.T.4
-
97
-
-
0000344740
-
Differential geometry of curved exponential families - Curvatures and information loss
-
Amari, S. (1982). Differential geometry of curved exponential families - curvatures and information loss. Ann. Stat. 10, 357-385.
-
(1982)
Ann. Stat.
, vol.10
, pp. 357-385
-
-
Amari, S.1
-
98
-
-
84964203940
-
Bootstrap methods for standard errors, confidence intervals, and other measures of statistical accuracy
-
Efron, B. & Tibshirani, R. (1986). Bootstrap methods for standard errors, confidence intervals, and other measures of statistical accuracy. Stat. Sci. 1, 54-77.
-
(1986)
Stat. Sci.
, vol.1
, pp. 54-77
-
-
Efron, B.1
Tibshirani, R.2
|