The hyperthermophilic bacterium Thermotoga maritima has two different classes of family C DNA polymerases: Evolutionary implications

Nucleic Acids Research

Volumn 26, Issue 23, 1998, Pages 5300-5309

  Huang, Yi Ping ^a   Ito, Junetsu ^a  

^a UNIVERSITY OF ARIZONA COLLEGE OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL ENZYME; DNA DIRECTED DNA POLYMERASE GAMMA;

AMINO ACID SEQUENCE; ARTICLE; CLOSTRIDIUM ACETOBUTYLICUM; EVOLUTION; MOLECULAR WEIGHT; MYCOPLASMA; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; PROTEIN FAMILY; THERMOPHILIC BACTERIUM;

BACILLUS SUBTILIS; CLOSTRIDIUM ACETOBUTYLICUM; ESCHERICHIA COLI; THERMOTOGA MARITIMA;

EID: 0032403213     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/26.23.5300     Document Type: Article

References (74)

1. Huber, R. and Stetter, K.O. (1992) In Kristjansson, J.K. (ed.), Thermophilic Bacteria. CRC Press, Boca Raton, FL, pp. 185-194.
2. Stetter, K.O. (1998) FEMS Microbiol. Rev., 18, 149-158.
3. Woese, C.R., Kandler, O. and Wheelis, M.L. (1990) Proc. Natl Acad. Sci. USA, 87, 4576-4579.
4. Huber, R., Langworthy, T.A., König, H., Thomm, M., Woese, C.R., Sleytr, U.B. and Stetter, K.O. (1986) Arch. Microbiol., 144, 324-333.
5. Sanangelantoni, A.M., Bocchetta, M., Cammarano, P. and Tiboni, O. (1994) J. Bacteriol., 176, 7703-7710.
6. Londei, P., Altamura, S., Huber, R., Stetter, K.O. and Cammarano, P. (1988) J. Bacteriol., 170, 4353-4360.
7. De Rose, M., Gambacorta, A., Huber, R., Lanzotti, D., Nicholaus, B., Stetter, K.O. and Trincone, A. (1988) J. Chem. Soc. Chem. Commun., 13, 1300.
8. Achenbach-Richter, L., Gupta, R.S., Stetter, K.O. and Woese, C.R. (1987) Syst. Appl. Microbiol., 9, 34-39.
9. Bachleitner, M., Ludwig, W., Stetter, K.O. and Schleifer, K.H. (1989) FEMS Microbiol. Lett., 48, 115-120.
10. Woese, C.R. (1994) Proc. Natl Acad. Sci. USA, 91, 1601-1603.
11. Baldauf, S.L., Palmer, J.D. and Doolittle, W.F. (1996) Proc. Natl Acad. Sci. USA, 93, 7749-7754.
12. Pace, N.R. (1997) Science, 276, 734-740.
13. Pace, N.R. (1991) Cell, 65, 531-533.
14. Ernst, W.G. (1983) In Schopf, J.W. (ed.), Earth's Earliest Biosphere. Princeton University Press, Princeton, NJ, pp. 41-52.
15. DeLong, E.F. (1992) Proc. Natl Acad. Sci. USA, 89, 5685-5689.
16. Schleper, C., Swanson, R.V., Mathur, E.J. and DeLong, E.F. (1997) J. Bacteriol., 179, 7803-7811.
17. Olsen, G.J., Woese, C.R. and Overbeek, R. (1994) J. Bacteriol., 176, 1-6.
18. Palm, P., Schleper, C., Arnold-Ammer, I., Holz, I., Meier, T., Lottspeich, F. and Zillig, W. (1993) Nucleic Acids Res., 21, 4904-4908.
19. Klenk, H.-P., Palm, P. and Zillig, W. (1994) Syst. Appl. Microbiol., 16, 638-647.
20. Tiboni, O., Cammarano, P. and Sanangelantoni, A.M. (1993) J. Bacteriol., 175, 2961-2969.
21. Brown, J.R., Masuchi, Y., Robb, F.T. and Doolittle, W.F. (1994) J. Mol. Evol., 38, 566-576.
22. Pesole, G., Gissi, C., Lanave, C. and Saccone, C. (1995) Mol. Biol. Evol. 12, 189-197.
23. Saccone, C., Gissi, C., Lanave, C. and Pesole, G. (1995) J. Mol. Evol., 40, 273-279.
24. Benachenhou-Lahfa, N., Forterre, P. and Labedan, B. (1993) J. Mol. Evol., 36, 335-346.
25. Gupta, R.S., Bustard, K., Falah, M. and Singh, D. (1997) J. Bacterial., 179, 345-357.
26. Eisen, J.A. (1995) J. Mol. Evol., 41, 1105-1123.
27. Gruber, T.M. and Bryant, D.A. (1997) J. Bacteriol., 179, 1734-1747.
28. Bost, D.A., Stoffel, S., Landre, P., Lawyer, F.C., Akers, J., Abramson, R.D. and Gelfand, D.H. (1994) FASEB J., 8, A1395.
29. Blamey, J.M., Mukund, S. and Adams, M.W. (1994) FEMS Microbiol. Lett., 121, 165-169.
30. Braithwaite, D.K. and Ito, J. (1993) Nucleic Acids Res., 21, 787-802.
31. Bult, C.J., White, O., Olsen, G.J., Zhou, L., Fleischmann, R.D., Sutton, G.G., Blake, J.A., FitzGerald, L.M., Clayton, R.A., Gocayne, J.D., Kerlavage, A.R., Dougherty, B.A., Tomb, J.F., Adams, M.D., Reich, C.I., Overbeek, R., Kirkness, E.F., Weinstock, K.G., Merrick, J.M., Glodek, A., Scott, J.L., Geoghagen, N.S.M. and Venter, J.C. (1996) Science, 273, 1058-1073.
32. Smith, D.R., Doucette-Stamm, L.A., Deloughery, C., Lee, H., Dubois, J., Aldredge, T., Bashirzadeh, R., Blakely, D., Cook, R., Gilbert, K., Harrison, D., Hoang, L., Keagle, P., Lumm, W., Pothier, B., Qiu, D., Spadafora, R., Vicaire, R., Wang, Y., Wierzbowski, J., Gibson, R., Jiwani, N., Caruso, A., Bush, D. and Reeve, J.N. (1997) J. Bacteriol., 179, 7135-7155.
33. Klenk, H.P., Clayton, R.A., Tomb, J.F., White, O., Nelson, K.E., Ketchum, K.A., Dodson, R.J., Gwinn, M., Hickey, E.K., Peterson, J.D., Richardson, D.L., Kerlavage, A.R., Graham, D.E., Kyrpides, N.C., Fleischmann, R.D., Quackenbush, J., Lee, N.H., Sutton, G.G., Gill, S., Kirkness, E.F., Dougherty, B.A., McKenney, K., Adams, M.D., Loftus, B. and Venter, J.C. (1997) Nature, 390, 364-370.
34. Perler, F.B., Kumar, S. and Kong, H. (1996) Adv. Protein Chem., 48, 377-435.
35. Kornberg, A. and Baker, T. (1992) DNA Replication, 2nd Edn. Freeman, San Francisco, CA.
36. Huang, Y.-P. and Ito, J. (1998) J. Mol. Evol., submitted for publication.
37. Sanger, F., Nicklen, S. and Coulson, A.R. (1977) Proc. Natl Acad. Sci. USA, 74, 5463-5467.
38. Devereux, J., Haeberli, P. and Smithies, O. (1984) Nucleic Acids Res., 12, 387-395.
39. Thompson, J.D., Higgins, D.G. and Gibson, T.J. (1994) Nucleic Acids Res., 22, 4673-4680.
40. Swofford, D.L. (1998) PAUP* 4.0 beta version. Sinauer Associates, Sunderland, MA.
41. Deckert, G., Warren, P.V., Gaasterland, T., Young, W.O., Lenox, A.L., Graham, D.E., Overbeek, R., Snead, M.A., Keller, M., Aujay, M., Huber, R., Feldman, R.A., Short, J.M., Olsen, G.J. and Swanson, R.V. (1998) Nature, 392, 353-358.
42. Kunst, F., Ogasawara, N., Moszer, I., Albertini, A.M., Alloni, G., Azevedo, V., Bertero, M.G., Bessieres, P., Bolotin, A., Borchert, S., Borriss, R., Boursier, L., Brans, A., Braun, M., Brignell, S.C., Bron, S., Brouillet, S., Bruschi, C.V., Caldwell, B., Capuano, V., Carter, N.M., Choi, S.K., Codani, J.J., Connerton, I.F. and Danchin, A. (1997) Nature, 390, 249-256.
43. Tomasiewicz, H.G. and McHenry, C.S. (1987) J. Bacteriol., 169, 5735-5744.
44. Pacitti, D.F., Barnes, M.H., Li, D.H. and Brown, N.C. (1995) Gene, 165, 51-56.
45. Barnes, M.H., Tarantino, P.M.J., Spacciapoli, P., Brown, N.C., Yu, H. and Dybvig, K. (1994) Mol. Microbiol., 13, 843-854.
46. Fraser, C.M., Gocayne, J.D., White, O., Adams, M.D., Clayton, R.A., Fleischmann, R.D., Bult, C.J., Kerlavage, A.R., Sutton, G. and Kelley, J.M. (1995) Science, 270, 397-403.
47. Himmelreich, R., Hilbert, H., Plagens, H., Pirkl, E., Li, B.C. and Herrmann, R. (1996) Nucleic Acids Res., 24, 4420-4449.
48. Barnes, M.H., Spacciapoli, P., Li, D.H. and Brown, N.C. (1995) Gene, 165, 45-50.
49. Huang, Y., Braithwaite, D.K. and Ito, J. (1997) FEBS Lett., 400, 94-98.
50. Ito, J. and Braithwaite, D.K. (1998) Mol. Microbiol., 27, 235-236.
51. Neville, M.M. and Brown, N.C. (1972) Nature New Biol., 240, 80-82.
52. Brown, N.C. (1970) Proc. Natl Acad. Sci. USA, 67, 1454-1461.
53. Barnes, M.H., Hammond, R.A., Foster, K.A., Mitchener, J.A. and Brown, N.C. (1989) Gene, 85, 177-186.
54. Hammond, R.A., Barnes, M.H., Mack, S.L., Mitchener, J.A. and Brown, N.C. (1991) Gene, 98, 29-36.
55. Saitou, N. and Nei, M. (1987) Mol. Biol. Evol., 4, 406-425.
56. Woese, C.R., Stackebrandt, E. and Ludwig, W. (1984) J. Mol. Evol., 21, 305-316.
57. Weisburg, W.G., Dobson, M.E., Samuel, J.E., Dasch, G.A., Mallavia, L.P., Baca, O., Mandelco, L., Sechrest, J.E., Weiss, E. and Woese, C.R. (1989) J. Bacteriol., 171, 4202-4206.
58. Woese, C.R. (1987) Microbiol. Rev., 51, 221-271.
59. Razin, S. (1978) Microbiol. Rev., 42, 414-470.
60. Kim, C.W., Markiewicz, P., Lee, J.J., Schierle, C.F. and Miller, J.H. (1993) J. Mol. Biol., 231, 960-981.
61. Kim, D.R., Pritchard, A.E. and McHenry, C.S. (1997) J. Bacteriol., 179, 6721-6728.
62. Fijalkowska, I.J. and Schaaper, R.M. (1993) Genetics, 134, 1039-1044.
63. Scheuermann, R.H. and Echols, H. (1984) Proc. Natl Acad. Sci. USA, 81, 7747-7751.
64. Koonin, E.V. and Bork, P. (1996) Trends Biochem. Sci., 21, 128-129.
65. Bouthier, d.l.T., Kaltoum, H., Portemer, C., Confalonieri, F., Huber, R. and Duguet, M. (1995) Biochim. Biophys. Acta, 1264, 279-283.
66. Guipaud, O., Labedan, B. and Forterre, P. (1996) Gene, 174, 121-128.
67. Brock, T.D. (1986) In Brock, T.D. (ed.), Thermophiles: General, Molecular and Applied Microbiology. John Wiley & Sons, New York, NY, pp. 1-16.
68. Stetter, K.O. (1996) In Evolution of Hydrothermal Ecosystems on Earth (and Mars?), Ciba Foundation Symposium 202. John Wiley & Sons, Chichester, UK, pp. 1-18.
69. Shock, E.L. (1996) In Evolution of Hydrothermal Ecosystems on Earth (and Mars?), Ciba Foundation Symposium 202. John Wiley & Sons, Chichester, UK, pp. 40-60.
70. Huber, R., Wilharm, J., Huber, D., Trincone, A., Burggraf, S., König, H., Rochel, R., Rochinga, I., Fricke, H. and Stetter, K.O. (1992) Syst. Appl. Microbiol., 15, 349-351.
71. Forterre, P. (1996) Cell, 85, 789-792.
72. Pennisi, E. (1998) Science, 280, 672-674.
73. Brown, J.R. and Doolittle, W.F. (1997) Microbiol. Mol. Biol. Rev., 61, 456-502.
74. Cavalier-Smith, T. (1992) Secondary Metabolites; Their Function and Evolution, Ciba Foundation Symposium 171. John Wiley & Sons, Chichester, UK, pp. 64-87.