-
1
-
-
0024293223
-
A tetrahedral intermediate in the EPSP synthase reaction observed by rapid quench kinetics
-
Anderson, K.S., Sikorski, J.A., and Johnson, K.A. (1988). A tetrahedral intermediate in the EPSP synthase reaction observed by rapid quench kinetics. Biochemistry 27, 7395-7406.
-
(1988)
Biochemistry
, vol.27
, pp. 7395-7406
-
-
Anderson, K.S.1
Sikorski, J.A.2
Johnson, K.A.3
-
2
-
-
0025743997
-
Deletion analysis of a multifunctional yeast tRNA ligase polypeptide
-
Apostol, B.L., Westaway, S.K., Abelson, J., and Greer, C.L. (1991). Deletion analysis of a multifunctional yeast tRNA ligase polypeptide. J. Biol. Chem. 266, 7445-7455.
-
(1991)
J. Biol. Chem.
, vol.266
, pp. 7445-7455
-
-
Apostol, B.L.1
Westaway, S.K.2
Abelson, J.3
Greer, C.L.4
-
3
-
-
0020740241
-
Analysis of numerical methods for computer simulation of kinetic processes: Development of KINSIM - A flexible, portable system
-
Barshop, B.A., Wrenn, R.F., and Frieden, C. (1983). Analysis of numerical methods for computer simulation of kinetic processes: development of KINSIM - a flexible, portable system. Anal. Biochem. 130, 134-145.
-
(1983)
Anal. Biochem.
, vol.130
, pp. 134-145
-
-
Barshop, B.A.1
Wrenn, R.F.2
Frieden, C.3
-
4
-
-
77956940788
-
Pancreatic ribonuclease
-
Blackburn, P., and Moore, S. (1982). Pancreatic ribonuclease. Enzymes 15b, 317-433.
-
(1982)
Enzymes
, vol.15 B
, pp. 317-433
-
-
Blackburn, P.1
Moore, S.2
-
5
-
-
1842333250
-
Mutational analysis of 39 residues of vaccinia DNA topoisomerase identifies Lys-220, Arg-223, and Asn-228as important for covalent catalysis
-
Cheng, C., Wang, L.K., Sekiguchi, J., and Shuman, S. (1997). Mutational analysis of 39 residues of vaccinia DNA topoisomerase identifies Lys-220, Arg-223, and Asn-228as important for covalent catalysis. J. Biol. Chem. 272, 8263-8269.
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 8263-8269
-
-
Cheng, C.1
Wang, L.K.2
Sekiguchi, J.3
Shuman, S.4
-
6
-
-
0028140256
-
Characterization of intra- and intermolecular DNA ligation mediated by eukaryotic topoisomerase I
-
Christiansen, K., and Westergaard, O. (1994). Characterization of intra- and intermolecular DNA ligation mediated by eukaryotic topoisomerase I. J. Biol. Chem. 269, 721-729.
-
(1994)
J. Biol. Chem.
, vol.269
, pp. 721-729
-
-
Christiansen, K.1
Westergaard, O.2
-
7
-
-
0027211007
-
Eukaryotic topoisomerase I-mediated cleavage requires bipartite DNA interaction
-
Christiansen, K., Svejstrup, A.B.D., Andersen, A.M., and Westergaard, O. (1993). Eukaryotic topoisomerase I-mediated cleavage requires bipartite DNA interaction. J. Biol. Chem. 268, 9690-9701.
-
(1993)
J. Biol. Chem.
, vol.268
, pp. 9690-9701
-
-
Christiansen, K.1
Svejstrup, A.B.D.2
Andersen, A.M.3
Westergaard, O.4
-
8
-
-
0026660190
-
Escherichia coli topoisomerase III-catalyzed cleavage of RNA
-
DiGate, R.J.,and Marians, K.J. (1992). Escherichia coli topoisomerase III-catalyzed cleavage of RNA. J. Biol. Chem. 267, 20532-20535.
-
(1992)
J. Biol. Chem.
, vol.267
, pp. 20532-20535
-
-
DiGate, R.J.1
Marians, K.J.2
-
9
-
-
0026330796
-
HIV-1 DNA integration: Mechanism of viral DNA cleavage and DNA strand transfer
-
Engelman, A., Mizuuchi, K., and Craigie, R. (1991). HIV-1 DNA integration: mechanism of viral DNA cleavage and DNA strand transfer. Cell 67, 1211-1221.
-
(1991)
Cell
, vol.67
, pp. 1211-1221
-
-
Engelman, A.1
Mizuuchi, K.2
Craigie, R.3
-
10
-
-
0021988616
-
Cyclization of RNA 3′-terminal phosphate by cyclase from HeLa cells proceeds via formation of N(3′)pp(5′)A activated intermediate
-
Filipowicz, W., Strugala, K., Konarska, M., and Shatkin, A.J. (1985). Cyclization of RNA 3′-terminal phosphate by cyclase from HeLa cells proceeds via formation of N(3′)pp(5′)A activated intermediate. Proc. Natl. Acad. Sci. USA 82, 1316-1320.
-
(1985)
Proc. Natl. Acad. Sci. USA
, vol.82
, pp. 1316-1320
-
-
Filipowicz, W.1
Strugala, K.2
Konarska, M.3
Shatkin, A.J.4
-
11
-
-
0030926016
-
The human 3′-terminal phosphate cyclase is a member of a new family of proteins conserved in eukarya, bacteria, and archaea
-
Genschik, P., Billy, E., Swianiewicz, M., and Filipowicz, W. (1997). The human 3′-terminal phosphate cyclase is a member of a new family of proteins conserved in eukarya, bacteria, and archaea. EMBO J. 16, 2955-2967.
-
(1997)
EMBO J.
, vol.16
, pp. 2955-2967
-
-
Genschik, P.1
Billy, E.2
Swianiewicz, M.3
Filipowicz, W.4
-
12
-
-
0022625953
-
Assembly of a tRNA splicing complex: Evidence for concerted excision and joining steps in splicing in vitro
-
Greer, C.L. (1986). Assembly of a tRNA splicing complex: evidence for concerted excision and joining steps in splicing in vitro. Mol. Cell. Biol. 6, 635-644.
-
(1986)
Mol. Cell. Biol.
, vol.6
, pp. 635-644
-
-
Greer, C.L.1
-
13
-
-
0028147370
-
Mutations of vaccinia virus DNA topoisomerase I that stabilize the cleavage complex
-
Gupta, M., Zhu, C.-X., and Tse-Dinh, Y.-C. (1994). Mutations of vaccinia virus DNA topoisomerase I that stabilize the cleavage complex. J. Biol. Chem. 269, 573-578.
-
(1994)
J. Biol. Chem.
, vol.269
, pp. 573-578
-
-
Gupta, M.1
Zhu, C.-X.2
Tse-Dinh, Y.-C.3
-
14
-
-
0024324205
-
On the mechanism of topoisomerase I inhibition by camptothecin: Evidence for binding to an enzyme-DNA complex
-
Hertzberg, R.P., Caranfa, M J., and Hecht, S.M. (1989). On the mechanism of topoisomerase I inhibition by camptothecin: evidence for binding to an enzyme-DNA complex. Biochemistry 28, 4629-4638.
-
(1989)
Biochemistry
, vol.28
, pp. 4629-4638
-
-
Hertzberg, R.P.1
Caranfa, M.J.2
Hecht, S.M.3
-
15
-
-
0022340594
-
Camptothecin induces protein-linked DNA breaks via mammalian DNA topoisomerase I
-
Hsiang, Y., Hertzberg, R., Hecht, S., and Liu, L.F. (1985). Camptothecin induces protein-linked DNA breaks via mammalian DNA topoisomerase I. J. Biol. Chem. 260, 14873-14878.
-
(1985)
J. Biol. Chem.
, vol.260
, pp. 14873-14878
-
-
Hsiang, Y.1
Hertzberg, R.2
Hecht, S.3
Liu, L.F.4
-
16
-
-
0025719903
-
Effect of local DNA sequence on topoisomerase I cleavage in the presence or absence of camptothecin
-
Jaxel, C., Capranico, G., Kerrigan, D., Kohn, K.W., and Pommier, Y. (1991). Effect of local DNA sequence on topoisomerase I cleavage in the presence or absence of camptothecin. J. Biol. Chem. 266, 20418-20423.
-
(1991)
J. Biol. Chem.
, vol.266
, pp. 20418-20423
-
-
Jaxel, C.1
Capranico, G.2
Kerrigan, D.3
Kohn, K.W.4
Pommier, Y.5
-
17
-
-
0027248517
-
Mechanism of site-specific recombination: Logic of assembling recombinase catalytic site from fractional active sites
-
Lee, J., and Jayaram, M. (1993). Mechanism of site-specific recombination: logic of assembling recombinase catalytic site from fractional active sites. J. Biol. Chem. 268, 17564-17579.
-
(1993)
J. Biol. Chem.
, vol.268
, pp. 17564-17579
-
-
Lee, J.1
Jayaram, M.2
-
18
-
-
0027528787
-
A novel mutation in DNA topoisomerase I of yeast causes DNA damage and RAD9-dependent cell cycle arrest
-
Levin, N.A., Bjornsti, M.A., and Fink, G.R. (1993). A novel mutation in DNA topoisomerase I of yeast causes DNA damage and RAD9-dependent cell cycle arrest. Genetics 133, 799-814.
-
(1993)
Genetics
, vol.133
, pp. 799-814
-
-
Levin, N.A.1
Bjornsti, M.A.2
Fink, G.R.3
-
19
-
-
0026565203
-
Cyclic 2′, 3′-phophates and nontemplated nucleotides at the 3' end of spliceosomal U6 small nuclear RNAs
-
Lund, E., and Dahlberg, J.E. (1992). Cyclic 2′, 3′-phophates and nontemplated nucleotides at the 3' end of spliceosomal U6 small nuclear RNAs. Science 255, 327-330.
-
(1992)
Science
, vol.255
, pp. 327-330
-
-
Lund, E.1
Dahlberg, J.E.2
-
20
-
-
0030962069
-
Alterations in the catalytic activity of yeast DNA topoisomerase I result in cell cycle arrest and cell death
-
Megonigal, M.D., Fertala, J., and Bjoprnsti, M.A. (1997). Alterations in the catalytic activity of yeast DNA topoisomerase I result in cell cycle arrest and cell death. J. Biol. Chem. 272, 12801-12808.
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 12801-12808
-
-
Megonigal, M.D.1
Fertala, J.2
Bjoprnsti, M.A.3
-
21
-
-
0020710638
-
Precise excision of intervening sequences from precursor tRNAs by a membrane-associated yeast endonuclease
-
Peebles, C.L., Gegenheimer, P., and Abelson, J. (1983). Precise excision of intervening sequences from precursor tRNAs by a membrane-associated yeast endonuclease. Cell 32, 525-536.
-
(1983)
Cell
, vol.32
, pp. 525-536
-
-
Peebles, C.L.1
Gegenheimer, P.2
Abelson, J.3
-
22
-
-
0030806205
-
DNA strand transfer reactions catalyzed by vaccinia topoisomerase: Hydrolysis and glycerololysis of the covalent protein-DNA intermediate
-
Petersen, B.Ø., and Shuman, S. (1997a). DNA strand transfer reactions catalyzed by vaccinia topoisomerase: hydrolysis and glycerololysis of the covalent protein-DNA intermediate. Nucleic Acids Res. 25, 2091-2097.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 2091-2097
-
-
Petersen, B.Ø.1
Shuman, S.2
-
23
-
-
0031058037
-
Histidine-265 is important for covalent catalysis by vaccinia topoisomerase and is conserved in all eukaryotic type I enzymes
-
Petersen, B.Ø., and Shuman, S. (1997b). Histidine-265 is important for covalent catalysis by vaccinia topoisomerase and is conserved in all eukaryotic type I enzymes. J. Biol. Chem. 272, 3891-3896.
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 3891-3896
-
-
Petersen, B.Ø.1
Shuman, S.2
-
24
-
-
0030601823
-
Mutations within a conserved region of vaccinia topoisomerase affect the cleavage-religation equilibrium
-
Petersen, B.Ø., Wittschieben, J., and Shuman, S. (1996). Mutations within a conserved region of vaccinia topoisomerase affect the cleavage-religation equilibrium. J. Mol. Biol. 263, 181-195.
-
(1996)
J. Mol. Biol.
, vol.263
, pp. 181-195
-
-
Petersen, B.Ø.1
Wittschieben, J.2
Shuman, S.3
-
25
-
-
0031003701
-
Effects of uracil incorporation, DNA mismatches, and abasic sites on DNA cleavage and religation activites of mammalian topoisomerase I
-
Porquier, P., Ueng, L., Kohlhagen, G., Mazumder, A., Gupta, M., Kohn, K.W., and Pommier, Y. (1997). Effects of uracil incorporation, DNA mismatches, and abasic sites on DNA cleavage and religation activites of mammalian topoisomerase I. J. Biol. Chem. 272, 7792-7796.
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 7792-7796
-
-
Porquier, P.1
Ueng, L.2
Kohlhagen, G.3
Mazumder, A.4
Gupta, M.5
Kohn, K.W.6
Pommier, Y.7
-
26
-
-
0025155503
-
Yeast tRNA-splicing endonuclease is a heterotrimeric enzyme
-
Rauhut, R., Green, P.R., and Abelson, J. (1990). Yeast tRNA-splicing endonuclease is a heterotrimeric enzyme. J. Biol. Chem. 265, 18180-18184.
-
(1990)
J. Biol. Chem.
, vol.265
, pp. 18180-18184
-
-
Rauhut, R.1
Green, P.R.2
Abelson, J.3
-
27
-
-
0021832279
-
The enzymatic conversion of 3′-phosphate terminated RNA chains to 2′, 3′-cyclic phosphate derivatives
-
Reinberg, D., Arenas, J., and Hurwitz, J. (1985). The enzymatic conversion of 3′-phosphate terminated RNA chains to 2′, 3′-cyclic phosphate derivatives. J. Biol. Chem. 260, 6088-6097.
-
(1985)
J. Biol. Chem.
, vol.260
, pp. 6088-6097
-
-
Reinberg, D.1
Arenas, J.2
Hurwitz, J.3
-
28
-
-
0028130224
-
Vaccinia topoisomerase binds circumferentially to DNA
-
Sekiguchi, J., and Shuman, S. (1994a). Vaccinia topoisomerase binds circumferentially to DNA. J. Biol. Chem. 269, 31731-31734.
-
(1994)
J. Biol. Chem.
, vol.269
, pp. 31731-31734
-
-
Sekiguchi, J.1
Shuman, S.2
-
29
-
-
0028641159
-
Requirements for noncovalent binding of vaccinia topoisomerase I to duplex DNA
-
Sekiguchi, J., and Shuman, S. (1994b). Requirements for noncovalent binding of vaccinia topoisomerase I to duplex DNA. Nucleic Acids Res. 22, 5360-5365.
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 5360-5365
-
-
Sekiguchi, J.1
Shuman, S.2
-
30
-
-
0029076737
-
Proteolytic footprinting of vaccinia topoisomerase I bound to DNA
-
Sekiguchi, J., and Shuman, S. (1995). Proteolytic footprinting of vaccinia topoisomerase I bound to DNA. J. Biol. Chem. 270, 11636-11645.
-
(1995)
J. Biol. Chem.
, vol.270
, pp. 11636-11645
-
-
Sekiguchi, J.1
Shuman, S.2
-
31
-
-
0030054972
-
Identification of contacts between topoisomerase land its target DNA by site-specific crosslinking
-
Sekiguchi, J., and Shuman, S. (1996). Identification of contacts between topoisomerase land its target DNA by site-specific crosslinking. EMBO J. 15, 3448-3457.
-
(1996)
EMBO J.
, vol.15
, pp. 3448-3457
-
-
Sekiguchi, J.1
Shuman, S.2
-
32
-
-
0030767872
-
Ligation of RNA-containing duplexes by vaccinia DNA ligase
-
in press
-
Sekiguchi, J., and Shuman, S. (1997). Ligation of RNA-containing duplexes by vaccinia DNA ligase. Biochemistry, in press.
-
(1997)
Biochemistry
-
-
Sekiguchi, J.1
Shuman, S.2
-
33
-
-
0030061445
-
Resolution of Holliday junctions by eukaryotic DNA topoisomerase I
-
Sekiguchi, J., Seeman, N.C., and Shuman, S. (1996). Resolution of Holliday junctions by eukaryotic DNA topoisomerase I. Proc. Natl. Acad. Sci. USA 93, 785-789.
-
(1996)
Proc. Natl. Acad. Sci. USA
, vol.93
, pp. 785-789
-
-
Sekiguchi, J.1
Seeman, N.C.2
Shuman, S.3
-
34
-
-
0030917446
-
Kinetic analysis of DNA and RNA strand transfer reactions catalyzed by vaccinia topoisomerase
-
Sekiguchi, J., Cheng, C., and Shuman, S. (1997). Kinetic analysis of DNA and RNA strand transfer reactions catalyzed by vaccinia topoisomerase. J. Biol. Chem. 272, 15721-15728.
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 15721-15728
-
-
Sekiguchi, J.1
Cheng, C.2
Shuman, S.3
-
35
-
-
0025964516
-
Site-specific DNA cleavage by vaccinia virus DNA topoisomerase I: Role of nucleotide sequence and DNA secondary structure
-
Shuman, S. (1991a). Site-specific DNA cleavage by vaccinia virus DNA topoisomerase I: role of nucleotide sequence and DNA secondary structure. J. Biol. Chem. 266, 1796-1803.
-
(1991)
J. Biol. Chem.
, vol.266
, pp. 1796-1803
-
-
Shuman, S.1
-
36
-
-
0025735876
-
Site-specific interaction of vaccinia virus DNA topoisomerase I with duplex DNA: Minimal DNA substrate for strand cleavage in vitro
-
Shuman, S. (1991b). Site-specific interaction of vaccinia virus DNA topoisomerase I with duplex DNA: minimal DNA substrate for strand cleavage in vitro. J. Biol. Chem. 266, 11372-11379.
-
(1991)
J. Biol. Chem.
, vol.266
, pp. 11372-11379
-
-
Shuman, S.1
-
37
-
-
0026657545
-
DNA strand transfer reactions catalyzed by vaccinia DNA topoisomerase I
-
Shuman, S. (1992a). DNA strand transfer reactions catalyzed by vaccinia DNA topoisomerase I. J. Biol. Chem. 267, 8620-8627.
-
(1992)
J. Biol. Chem.
, vol.267
, pp. 8620-8627
-
-
Shuman, S.1
-
38
-
-
0026806143
-
Two classes of DNA end-joining reactions catalyzed by vaccinia topoisomerase I
-
Shuman, S. (1992b). Two classes of DNA end-joining reactions catalyzed by vaccinia topoisomerase I. J. Biol. Chem. 267, 16755-16758.
-
(1992)
J. Biol. Chem.
, vol.267
, pp. 16755-16758
-
-
Shuman, S.1
-
39
-
-
0025144958
-
Specific DNA cleavage and binding by vaccinia virus DNA topoisomerase I
-
Shuman, S., and Prescott, J. (1990). Specific DNA cleavage and binding by vaccinia virus DNA topoisomerase I. J. Biol. Chem. 265, 17826-17836.
-
(1990)
J. Biol. Chem.
, vol.265
, pp. 17826-17836
-
-
Shuman, S.1
Prescott, J.2
-
40
-
-
0024828122
-
Mapping the active site tyrosine of vaccinia virus DNA topoisomerase I
-
Shuman, S., Kane, E.M., and Morham, S.G. (1989). Mapping the active site tyrosine of vaccinia virus DNA topoisomerase I. Proc. Natl. Acad. Sci. USA 86, 9793-9797.
-
(1989)
Proc. Natl. Acad. Sci. USA
, vol.86
, pp. 9793-9797
-
-
Shuman, S.1
Kane, E.M.2
Morham, S.G.3
-
41
-
-
0024411478
-
Interactions between eukaryotic DNA topoisomerase I and a specific binding sequence
-
Stevnser, T., Mortensen, U.H., Westergaard, O., and Bonven, B.J. (1989). Interactions between eukaryotic DNA topoisomerase I and a specific binding sequence. J. Biol. Chem. 264, 10110-10113.
-
(1989)
J. Biol. Chem.
, vol.264
, pp. 10110-10113
-
-
Stevnser, T.1
Mortensen, U.H.2
Westergaard, O.3
Bonven, B.J.4
-
42
-
-
0029986467
-
Biochemical and biophysical analyses of recombinant forms of human topoisomerase I
-
Stewart, L., Ireton, G.C., Parker, L.H., Madden, K.R., and Champoux, J.J. (1996). Biochemical and biophysical analyses of recombinant forms of human topoisomerase I. J. Biol. Chem. 271, 7593-7601.
-
(1996)
J. Biol. Chem.
, vol.271
, pp. 7593-7601
-
-
Stewart, L.1
Ireton, G.C.2
Parker, L.H.3
Madden, K.R.4
Champoux, J.J.5
-
43
-
-
0028091124
-
Vaccinia DNA topoisomerase I: Single-turnover and steady-state kinetic analysis of the DNA strand cleavage and ligation reactions
-
Stivers, J.T., Shuman, S., and Mildvan, A.S. (1994). Vaccinia DNA topoisomerase I: Single-turnover and steady-state kinetic analysis of the DNA strand cleavage and ligation reactions. Biochemistry 33, 327-339.
-
(1994)
Biochemistry
, vol.33
, pp. 327-339
-
-
Stivers, J.T.1
Shuman, S.2
Mildvan, A.S.3
-
44
-
-
0025287261
-
Minimal DNA duplex requirements for topoisomerase I-mediated cleavage in vitro
-
Svejstrup, J.Q., Christiansen, K., Andersen, A.H., Lund, K., and Westergaard, O. (1990). Minimal DNA duplex requirements for topoisomerase I-mediated cleavage in vitro. J. Biol. Chem. 265, 12529-12535.
-
(1990)
J. Biol. Chem.
, vol.265
, pp. 12529-12535
-
-
Svejstrup, J.Q.1
Christiansen, K.2
Andersen, A.H.3
Lund, K.4
Westergaard, O.5
-
45
-
-
0030730820
-
The yeast tRNA splicing endonuclease: A tetrameric enzyme with two active site subunits homologous to the archael tRNA endonucleases
-
Trotta, C.R., Miao, F., Arn, E.A., Stevens, S.W., Ho, C.K., Rauhut, R., and Abelson, J.N. (1997). The yeast tRNA splicing endonuclease: a tetrameric enzyme with two active site subunits homologous to the archael tRNA endonucleases. Cell 89, 849-858.
-
(1997)
Cell
, vol.89
, pp. 849-858
-
-
Trotta, C.R.1
Miao, F.2
Arn, E.A.3
Stevens, S.W.4
Ho, C.K.5
Rauhut, R.6
Abelson, J.N.7
-
46
-
-
0030014783
-
DNA topoisomerases
-
Wang, J.C. (1996). DNA topoisomerases. Annu. Rev. Biochem. 65, 635-692.
-
(1996)
Annu. Rev. Biochem.
, vol.65
, pp. 635-692
-
-
Wang, J.C.1
-
47
-
-
0029792919
-
An RNA topoisomerase
-
Wang, H., DiGate, R.J., and Seeman, N.C. (1996). An RNA topoisomerase. Proc. Natl. Acad. Sci. USA 93, 9477-9482.
-
(1996)
Proc. Natl. Acad. Sci. USA
, vol.93
, pp. 9477-9482
-
-
Wang, H.1
DiGate, R.J.2
Seeman, N.C.3
-
48
-
-
0030759204
-
Mechanism of DNA transesterification by vaccinia topoisomerase: Catalytic contributions of essential residues Arg-130, Gly-132, Tyr-136, and Lys-167
-
in press
-
Wittschieben, J., and Shuman, S. (1997). Mechanism of DNA transesterification by vaccinia topoisomerase: catalytic contributions of essential residues Arg-130, Gly-132, Tyr-136, and Lys-167. Nucleic Acids. Res., in press.
-
(1997)
Nucleic Acids. Res.
-
-
Wittschieben, J.1
Shuman, S.2
|