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Volumn 258, Issue 4, 1996, Pages 562-574

Physical and functional analysis of the prokaryotic enhancer of the σ54-promoters of the TOL Plasmid of Pseudomonas putida

Author keywords

Enhancers; Oligomerization; Pseudomonas; Sigma 54; XylR

Indexed keywords

BACTERIAL DNA; CIS ACTING ELEMENT; DEOXYRIBONUCLEASE I; DNA BINDING PROTEIN; HYDROXYL RADICAL;

EID: 0029865771     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1006/jmbi.1996.0269     Document Type: Article
Times cited : (42)

References (46)
  • 1
    • 0027240872 scopus 로고
    • Physical organization of the Pseudomonas TOL plasmid upper pathway operon promoter. Sequence and positional requirements for XylR-dependent activation of transcription
    • Abril, M. A. & Ramos, J. L. (1993). Physical organization of the Pseudomonas TOL plasmid upper pathway operon promoter. Sequence and positional requirements for XylR-dependent activation of transcription. Mol. Gen. Genet. 239, 281-288.
    • (1993) Mol. Gen. Genet. , vol.239 , pp. 281-288
    • Abril, M.A.1    Ramos, J.L.2
  • 2
    • 0026049422 scopus 로고
    • Activation of the Pseudomonas TOL plasmid upper pathway operon. Identification of binding sites for the positive regulator XylR and for the integration host factor protein
    • Abril, M. A., Buck, M. & Ramos, J. L. (1991). Activation of the Pseudomonas TOL plasmid upper pathway operon. Identification of binding sites for the positive regulator XylR and for the integration host factor protein. J. Biol. Chem. 266, 5832-5838.
    • (1991) J. Biol. Chem. , vol.266 , pp. 5832-5838
    • Abril, M.A.1    Buck, M.2    Ramos, J.L.3
  • 3
    • 0026581288 scopus 로고
    • The prokaryotic enhancer binding protein NtrC has an ATPase activity which is phosphorylation and DNA dependent
    • Austin, S. & Dixon, R. (1992). The prokaryotic enhancer binding protein NtrC has an ATPase activity which is phosphorylation and DNA dependent. EMBO J. 11, 2219-2228.
    • (1992) EMBO J. , vol.11 , pp. 2219-2228
    • Austin, S.1    Dixon, R.2
  • 4
    • 0025971243 scopus 로고
    • Role of integration host factor in the regulation of the glnHp2 promoter of Escherichia coli
    • Claverie-Martin, F. & Magasanik, B. (1991). Role of integration host factor in the regulation of the glnHp2 promoter of Escherichia coli. Proc. Natl Acad. Sci. USA, 88, 1631-1635.
    • (1991) Proc. Natl Acad. Sci. USA , vol.88 , pp. 1631-1635
    • Claverie-Martin, F.1    Magasanik, B.2
  • 5
    • 0026003072 scopus 로고
    • Control site location and regulation in Escherichia coli
    • Collado-Vides, J., Magasanik, B. & Gralla, J. D. (1991). Control site location and regulation in Escherichia coli. Microbiol. Rev. 55, 371-394.
    • (1991) Microbiol. Rev. , vol.55 , pp. 371-394
    • Collado-Vides, J.1    Magasanik, B.2    Gralla, J.D.3
  • 7
    • 0028244041 scopus 로고
    • Genetic evidence for activation of the positive transcriptional regulator XylR, a member of the NtrC family of regulators, by effector binding
    • Delgado, A. & Ramos, J. L. (1994). Genetic evidence for activation of the positive transcriptional regulator XylR, a member of the NtrC family of regulators, by effector binding. J. Biol. Chem. 269, 8059-8062.
    • (1994) J. Biol. Chem. , vol.269 , pp. 8059-8062
    • Delgado, A.1    Ramos, J.L.2
  • 8
    • 0028038233 scopus 로고
    • Cross-regulation by XylR and DmpR activators of Pseudomonas putida suggest that transcriptional control of biodegradative operons evolves independently of catabolic genes
    • Férnandez, S., Shingler, V. & de Lorenzo, V. (1994). Cross-regulation by XylR and DmpR activators of Pseudomonas putida suggest that transcriptional control of biodegradative operons evolves independently of catabolic genes. J. Bacteriol. 176, 5052-5058.
    • (1994) J. Bacteriol. , vol.176 , pp. 5052-5058
    • Férnandez, S.1    Shingler, V.2    De Lorenzo, V.3
  • 9
    • 0029063837 scopus 로고
    • Activation of the transcriptional regulator XylR of Pseudomonas putida by release of repression between functional domains
    • Fernández, S., de Lorenzo, V. & Pérez-Martín, J. (1995). Activation of the transcriptional regulator XylR of Pseudomonas putida by release of repression between functional domains. Mol. Microbiol. 16, 205-213.
    • (1995) Mol. Microbiol. , vol.16 , pp. 205-213
    • Fernández, S.1    De Lorenzo, V.2    Pérez-Martín, J.3
  • 10
    • 0029016807 scopus 로고
    • Constitutive forms of the enhancer-binding protein NtrC: Evidence that essential oligomerization determinants lie in the central activation domain
    • Flashner, Y., Weiss, D. S., Keener, J. & Kustu, S. (1995). Constitutive forms of the enhancer-binding protein NtrC: evidence that essential oligomerization determinants lie in the central activation domain. J. Mol. Biol. 249, 700-713.
    • (1995) J. Mol. Biol. , vol.249 , pp. 700-713
    • Flashner, Y.1    Weiss, D.S.2    Keener, J.3    Kustu, S.4
  • 11
    • 0025171151 scopus 로고
    • Integration host factor is required for the activation of developmentally regulated genes in Caulobacter
    • Gober, J. W. & Shapiro, L. (1990). Integration host factor is required for the activation of developmentally regulated genes in Caulobacter. Genes Dev. 4, 1494-1504.
    • (1990) Genes Dev. , vol.4 , pp. 1494-1504
    • Gober, J.W.1    Shapiro, L.2
  • 12
    • 0026776253 scopus 로고
    • Analysis of an upstream regulatory sequence required for activation of the regulatory gene xylS in xylene metabolism directed by the TOL plasmid of Pseudomonas putida
    • Gomada, M., Inouye, S., Imaishi, H., Nakazawa, A. & Nakazawa, T. (1992). Analysis of an upstream regulatory sequence required for activation of the regulatory gene xylS in xylene metabolism directed by the TOL plasmid of Pseudomonas putida. Mol. Gen. Genet. 233, 419-426.
    • (1992) Mol. Gen. Genet. , vol.233 , pp. 419-426
    • Gomada, M.1    Inouye, S.2    Imaishi, H.3    Nakazawa, A.4    Nakazawa, T.5
  • 13
    • 0025946047 scopus 로고
    • Transcriptional control: Lessons from a E. Coli promoter data base
    • Gralla, J. D. (1991). Transcriptional control: lessons from a E. coli promoter data base. Cell, 66, 415-418.
    • (1991) Cell , vol.66 , pp. 415-418
    • Gralla, J.D.1
  • 14
    • 0025185118 scopus 로고
    • Promoter-upstream activator sequences are required for expression of the xylS gene and upper-pathway operon of the Pseudomonas TOL plasmid
    • Holtel, A., Abril, M. A., Marques, S., Timmis, K. N. & Ramos, J. L. (1990). Promoter-upstream activator sequences are required for expression of the xylS gene and upper-pathway operon of the Pseudomonas TOL plasmid. Mol. Microbiol. 4, 1551-1556.
    • (1990) Mol. Microbiol. , vol.4 , pp. 1551-1556
    • Holtel, A.1    Abril, M.A.2    Marques, S.3    Timmis, K.N.4    Ramos, J.L.5
  • 15
    • 0026572610 scopus 로고
    • Upstream binding sequences of the XylR activator protein and integration host factor in the xylS gene promoter region of the Pseudomonas TOL plasmid
    • Holtel, A., Timmis, K. N. & Ramos, J. L. (1992). Upstream binding sequences of the XylR activator protein and integration host factor in the xylS gene promoter region of the Pseudomonas TOL plasmid. Nucl. Acids Res. 20, 1755-1762.
    • (1992) Nucl. Acids Res. , vol.20 , pp. 1755-1762
    • Holtel, A.1    Timmis, K.N.2    Ramos, J.L.3
  • 16
    • 0025012093 scopus 로고
    • Integration host factor stimulates interaction of RNA polymerase with NifA, the transcriptional activator for nitrogen fixation operons
    • Hoover, T. R., Santero, E., Porter, S. & Kustu, S. (1990). Integration host factor stimulates interaction of RNA polymerase with NifA, the transcriptional activator for nitrogen fixation operons. Cell, 63, 11-22.
    • (1990) Cell , vol.63 , pp. 11-22
    • Hoover, T.R.1    Santero, E.2    Porter, S.3    Kustu, S.4
  • 17
    • 0023394536 scopus 로고
    • Expression of the regulatory gene xylS on the TOL plasmid is positively controlled by the xylR gene product
    • Inouye, S., Nakazawa, A. & Nakazawa, T. (1987). Expression of the regulatory gene xylS on the TOL plasmid is positively controlled by the xylR gene product. Proc. Natl Acad. Sci. USA, 84, 5182-5186.
    • (1987) Proc. Natl Acad. Sci. USA , vol.84 , pp. 5182-5186
    • Inouye, S.1    Nakazawa, A.2    Nakazawa, T.3
  • 18
    • 0023945801 scopus 로고
    • Nucleotide sequence of the regulatory gene xylR of the TOL plasmid from Pseudomonas putida
    • Inouye, S., Nakazawa, A. & Nakazawa, T. (1988). Nucleotide sequence of the regulatory gene xylR of the TOL plasmid from Pseudomonas putida. Gene, 66, 301-306.
    • (1988) Gene , vol.66 , pp. 301-306
    • Inouye, S.1    Nakazawa, A.2    Nakazawa, T.3
  • 19
    • 0025675633 scopus 로고
    • Upstream regulatory sequences for transcriptional activator XylR in the first operon of xylene metabolism of the TOL plasmid
    • Inouye, S., Gomada, M., Sangodkar, U. M. X., Nakazawa, A. & Nakazawa, T. (1990). Upstream regulatory sequences for transcriptional activator XylR in the first operon of xylene metabolism of the TOL plasmid. J. Mol. Biol. 216, 251-260.
    • (1990) J. Mol. Biol. , vol.216 , pp. 251-260
    • Inouye, S.1    Gomada, M.2    Sangodkar, U.M.X.3    Nakazawa, A.4    Nakazawa, T.5
  • 20
    • 0023613953 scopus 로고
    • Rapid and efficient site-directed mutagenesis without phenotypic selection
    • Kunkel, T., Roberts, J. D. & Zakour, R. A. (1987). Rapid and efficient site-directed mutagenesis without phenotypic selection. Methods Enzymol. 154, 367-382.
    • (1987) Methods Enzymol. , vol.154 , pp. 367-382
    • Kunkel, T.1    Roberts, J.D.2    Zakour, R.A.3
  • 21
    • 0024728119 scopus 로고
    • Expression of sigma-54 (ntrA)-dependent genes is probably united by a common mechanism
    • Kustu, S., Santero, E., Keener, J., Popham, D. & Weiss, D. (1989). Expression of sigma-54 (ntrA)-dependent genes is probably united by a common mechanism. Microbiol. Rev. 53, 367-376.
    • (1989) Microbiol. Rev. , vol.53 , pp. 367-376
    • Kustu, S.1    Santero, E.2    Keener, J.3    Popham, D.4    Weiss, D.5
  • 22
    • 0025938894 scopus 로고
    • Prokaryotic transcriptional enhancers and enhancer-binding proteins
    • Kustu, S., North, A. K. & Weiss, D. (1991). Prokaryotic transcriptional enhancers and enhancer-binding proteins. Trends Biochem. Sci. 16, 397-402.
    • (1991) Trends Biochem. Sci. , vol.16 , pp. 397-402
    • Kustu, S.1    North, A.K.2    Weiss, D.3
  • 23
    • 0027282545 scopus 로고
    • Transcriptional control of the Pseudomonas putida TOL plasmid catabolic pathways
    • Marqués, S. & Ramos, J. L. (1993). Transcriptional control of the Pseudomonas putida TOL plasmid catabolic pathways. Mol. Microbiol. 9, 923-929.
    • (1993) Mol. Microbiol. , vol.9 , pp. 923-929
    • Marqués, S.1    Ramos, J.L.2
  • 24
    • 0018846636 scopus 로고
    • Sequencing end labelled DNA with base specific chemical cleavages
    • Maxam, A. M. & Gilbert, W. (1980). Sequencing end labelled DNA with base specific chemical cleavages. Methods Enzymol. 65, 499-560.
    • (1980) Methods Enzymol. , vol.65 , pp. 499-560
    • Maxam, A.M.1    Gilbert, W.2
  • 25
    • 0029148094 scopus 로고
    • Mechanism of activation of a response regulator: Interaction of NtrC-P dimers induces ATPase activity
    • Mettke, I., Fiedler, U. & Weiss, V. (1995). Mechanism of activation of a response regulator: interaction of NtrC-P dimers induces ATPase activity J. Bacteriol. 177, 5056-5061.
    • (1995) J. Bacteriol. , vol.177 , pp. 5056-5061
    • Mettke, I.1    Fiedler, U.2    Weiss, V.3
  • 26
    • 0003785155 scopus 로고
    • Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
    • Miller, J. H. (1972). Experiments in Molecular Genetics, pp. 352-355, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
    • (1972) Experiments in Molecular Genetics , pp. 352-355
    • Miller, J.H.1
  • 27
    • 0027340543 scopus 로고
    • 54 bacterial enhancer-binding protein family: Mechanism of action and phylogenetic relationship of their functional domains
    • 54 bacterial enhancer-binding protein family: mechanism of action and phylogenetic relationship of their functional domains. J. Bacteriol. 178, 6067-6074.
    • (1993) J. Bacteriol. , vol.178 , pp. 6067-6074
    • Morett, E.1    Segovia, L.2
  • 28
    • 0027248437 scopus 로고
    • Prokaryotic enhancer-binding proteins reflect eukaryote-like modularity: The puzzle of nitrogen regulatory protein C
    • North, A. K., Klose, K. E., Stedman, K. M. & Kustu, S. (1993). Prokaryotic enhancer-binding proteins reflect eukaryote-like modularity: the puzzle of nitrogen regulatory protein C. J. Bacteriol. 175, 4267-4273.
    • (1993) J. Bacteriol. , vol.175 , pp. 4267-4273
    • North, A.K.1    Klose, K.E.2    Stedman, K.M.3    Kustu, S.4
  • 29
    • 0028980296 scopus 로고
    • 54-dependent promoter Ps of the TOL plasmid of Pseudomonas putida requires HU for transcriptional activation in vivo by XylR
    • 54-dependent promoter Ps of the TOL plasmid of Pseudomonas putida requires HU for transcriptional activation in vivo by XylR. J. Bacteriol. 177, 3758-3763.
    • (1995) J. Bacteriol. , vol.177 , pp. 3758-3763
    • Pérez-Martín, J.1    De Lorenzo, V.2
  • 31
    • 0029073435 scopus 로고
    • The N-terminal domain of the prokaryotic enhancer-binding protein XylR is an specific intramolecular repressor
    • Pérez-Martín, J. & de Lorenzo, V. (1995c). The N-terminal domain of the prokaryotic enhancer-binding protein XylR is an specific intramolecular repressor. Proc. Natl Acad. Sci. USA, 92, 9392-9396.
    • (1995) Proc. Natl Acad. Sci. USA , vol.92 , pp. 9392-9396
    • Pérez-Martín, J.1    De Lorenzo, V.2
  • 32
    • 0029919623 scopus 로고    scopus 로고
    • 54-dependent transcriptional activator of Pseudomonas putida
    • 54-dependent transcriptional activator of Pseudomonas putida. J. Mol. Biol. 258, 575-587.
    • (1996) J. Mol. Biol. , vol.258 , pp. 575-587
    • Pérez-Martín, J.1    De Lorenzo, V.2
  • 33
    • 0029870669 scopus 로고    scopus 로고
    • Identification of the repressor subdomain within the signal reception module of the prokaryotic enhancer-binding protein XylR of Pseudomonas putida
    • In the press
    • Pérez-Martín, J. & de Lorenzo, V. (1996b). Identification of the repressor subdomain within the signal reception module of the prokaryotic enhancer-binding protein XylR of Pseudomonas putida. J. Biol. Chem. In the press.
    • (1996) J. Biol. Chem.
    • Pérez-Martín, J.1    De Lorenzo, V.2
  • 34
    • 0028100756 scopus 로고
    • 54-dependent promoter Pu of the upper-TOL operon by intrinsically curved sequences
    • 54-dependent promoter Pu of the upper-TOL operon by intrinsically curved sequences. J. Biol. Chem. 269, 22657-22662.
    • (1994) J. Biol. Chem. , vol.269 , pp. 22657-22662
    • Pérez-Martín, J.1    Timmis, K.N.2    De Lorenzo, V.3
  • 35
    • 0024598928 scopus 로고
    • Function of a bacterial activator protein that binds to transcriptional enhancers
    • Popham, D. L., Szeto, D., Keener, J. & Kustu, S. (1989). Function of a bacterial activator protein that binds to transcriptional enhancers. Science, 243, 629-635.
    • (1989) Science , vol.243 , pp. 629-635
    • Popham, D.L.1    Szeto, D.2    Keener, J.3    Kustu, S.4
  • 36
    • 0027359777 scopus 로고
    • Oligomerization of NtrC at the glnA enhancer is required for transcriptional activation
    • Porter, S. C., North, A. K., Wedel, A. B. & Kustu, S. (1993). Oligomerization of NtrC at the glnA enhancer is required for transcriptional activation. Genes Dev. 7, 2258-2273.
    • (1993) Genes Dev. , vol.7 , pp. 2258-2273
    • Porter, S.C.1    North, A.K.2    Wedel, A.B.3    Kustu, S.4
  • 37
    • 0002830404 scopus 로고
    • Mechanism of transcriptional activation by NtrC (Nitrogen Regulatory Protein C): Requirement for oligomerization and phosphorylation
    • (Silhavy T. & Hoch, J., eds), American Society of Microbiology Washington DC
    • Porter, S. C., North, A. K. & Kustu, S. (1995). Mechanism of transcriptional activation by NtrC (Nitrogen Regulatory Protein C): requirement for oligomerization and phosphorylation. In Two-component Signal Transduction (Silhavy T. & Hoch, J., eds), pp. 147-158, American Society of Microbiology Washington DC.
    • (1995) Two-component Signal Transduction , pp. 147-158
    • Porter, S.C.1    North, A.K.2    Kustu, S.3
  • 38
    • 0022446209 scopus 로고
    • Transcription of glnA in E. coli is stimulated by activator bound to sites far from the promoter
    • Reitzer, L. & Magasanik, B. (1986). Transcription of glnA in E. coli is stimulated by activator bound to sites far from the promoter. Cell, 45, 785-792.
    • (1986) Cell , vol.45 , pp. 785-792
    • Reitzer, L.1    Magasanik, B.2
  • 40
    • 0028325759 scopus 로고
    • Sensing aromatic compounds by the DmpR transcriptional activator of phenol-catabolizing Pseudomonas sp. Strain CF600
    • Shingler, V. & Moore, T. (1994). Sensing aromatic compounds by the DmpR transcriptional activator of phenol-catabolizing Pseudomonas sp. strain CF600. J. Bacteriol. 176, 1555-1560.
    • (1994) J. Bacteriol. , vol.176 , pp. 1555-1560
    • Shingler, V.1    Moore, T.2
  • 41
    • 0027400541 scopus 로고
    • Cloning and nucleotide sequence of the positive regulator DmpR, of the phenol catabolic pathway of pVI150: A member of the NtrC family of transcriptional activators
    • Shingler, V., Bartilson, M. & Moore, T. (1993). Cloning and nucleotide sequence of the positive regulator DmpR, of the phenol catabolic pathway of pVI150: a member of the NtrC family of transcriptional activators. J. Bacteriol. 175, 1596-1604.
    • (1993) J. Bacteriol. , vol.175 , pp. 1596-1604
    • Shingler, V.1    Bartilson, M.2    Moore, T.3
  • 42
    • 0023255472 scopus 로고
    • Improved single and multicopy lac-based cloning vectors for protein and operon fusions
    • Simons, R. W., Houman, F. & Kleckner, N. (1987). Improved single and multicopy lac-based cloning vectors for protein and operon fusions. Gene, 53, 85-96.
    • (1987) Gene , vol.53 , pp. 85-96
    • Simons, R.W.1    Houman, F.2    Kleckner, N.3
  • 43
    • 0025035371 scopus 로고
    • DNA-looping and enhancer activity: Association between DNA-bound NtrC activator and RNA polymerase at the bacterial glnA promoter
    • Su, W., Porter, S. C., Kustu, S. & Echols, H. (1990). DNA-looping and enhancer activity: association between DNA-bound NtrC activator and RNA polymerase at the bacterial glnA promoter. Proc. Natl Acad. Sci. USA, 87, 5504-5508.
    • (1990) Proc. Natl Acad. Sci. USA , vol.87 , pp. 5504-5508
    • Su, W.1    Porter, S.C.2    Kustu, S.3    Echols, H.4
  • 44
    • 0001268975 scopus 로고
    • Hydroxyl radical "footprinting": High-resolution information about DNA-protein contacts and application to λ repressor and Cro protein
    • Tullius, T. D. & Dombroski, B. A. (1986). Hydroxyl radical "footprinting": high-resolution information about DNA-protein contacts and application to λ repressor and Cro protein. Proc. Natl Acad. Sci. USA, 83, 5469-5473.
    • (1986) Proc. Natl Acad. Sci. USA , vol.83 , pp. 5469-5473
    • Tullius, T.D.1    Dombroski, B.A.2
  • 45
    • 0029166594 scopus 로고
    • The bacterial enhancer-binding protein NTRC is a molecular machine: ATP hydrolysis is coupled to transcriptional activation
    • Wedel, A. & Kustu, S. (1995). The bacterial enhancer-binding protein NTRC is a molecular machine: ATP hydrolysis is coupled to transcriptional activation. Genes Dev. 9, 2042-2052.
    • (1995) Genes Dev. , vol.9 , pp. 2042-2052
    • Wedel, A.1    Kustu, S.2
  • 46
    • 0026070143 scopus 로고
    • The phophorylated form of the enhancer-binding protein NtrC has an ATPase activity that is essential for activation of transcription
    • Weiss, D., Batut, J., Klose, K. & Kustu, S. (1991). The phophorylated form of the enhancer-binding protein NtrC has an ATPase activity that is essential for activation of transcription. Cell, 67, 155-167.
    • (1991) Cell , vol.67 , pp. 155-167
    • Weiss, D.1    Batut, J.2    Klose, K.3    Kustu, S.4


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