-
1
-
-
36849129194
-
-
Karplus, M.; Porter, R. N.; Sharma, R. D. J. Chem. Phys. 1965, 43, 3259.
-
(1965)
J. Chem. Phys.
, vol.43
, pp. 3259
-
-
Karplus, M.1
Porter, R.N.2
Sharma, R.D.3
-
6
-
-
36549092405
-
-
Bergsma, J. P.; Reimers, J. R.; Wilson, K. R.; Hynes, J. T. J. Chem. Phys. 1986, 85, 5625.
-
(1986)
J. Chem. Phys.
, vol.85
, pp. 5625
-
-
Bergsma, J.P.1
Reimers, J.R.2
Wilson, K.R.3
Hynes, J.T.4
-
7
-
-
33751128029
-
-
Bergsma, J. P.; Gertner, B. J.; Wilson, K. R.; Hynes, J. T. J. Chem. Phys. 1987, 86, 1356.
-
(1987)
J. Chem. Phys.
, vol.86
, pp. 1356
-
-
Bergsma, J.P.1
Gertner, B.J.2
Wilson, K.R.3
Hynes, J.T.4
-
8
-
-
0020160864
-
-
Northrup, S. H.; Pear, M. R.; Lee, C.-Y.; McCammon, J. A.; Karplus, M. Proc. Natl. Acad. Sci. U.S.A. 1982, 79, 4035.
-
(1982)
Proc. Natl. Acad. Sci. U.S.A.
, vol.79
, pp. 4035
-
-
Northrup, S.H.1
Pear, M.R.2
Lee, C.-Y.3
McCammon, J.A.4
Karplus, M.5
-
11
-
-
0000036869
-
-
Neria, E.; Fischer, S.; Karplus, M. J. Chem. Phys. 1996, 105, 1902.
-
(1996)
J. Chem. Phys.
, vol.105
, pp. 1902
-
-
Neria, E.1
Fischer, S.2
Karplus, M.3
-
12
-
-
0000729781
-
-
Dellago, C.; Bolhuis, P. G.; Csajka, F. S.; Chandler, D. J. Chem. Phys. 1998, 108, 1964.
-
(1998)
J. Chem. Phys.
, vol.108
, pp. 1964
-
-
Dellago, C.1
Bolhuis, P.G.2
Csajka, F.S.3
Chandler, D.4
-
13
-
-
0344301982
-
-
Dobson, C. M.; Karplus, M.; Šali, A. Augew. Chem. Int. Ed. 1998, 37, 868.
-
(1998)
Augew. Chem. Int. Ed.
, vol.37
, pp. 868
-
-
Dobson, C.M.1
Karplus, M.2
Šali, A.3
-
14
-
-
21944431658
-
-
Smith, L. J.; Fiebig, K. M.; Schwalbe, H.; Dobson, C. M. Folding Des. 1996, 1, R5.
-
(1996)
Folding Des.
, vol.1
-
-
Smith, L.J.1
Fiebig, K.M.2
Schwalbe, H.3
Dobson, C.M.4
-
18
-
-
0032005143
-
-
Pande, V. S.; Grosberg, A. Y.; Tanaka, T.; Rokhsar, D. S. Curr. Opin. Struct. Biol. 1998, 8, 68.
-
(1998)
Curr. Opin. Struct. Biol.
, vol.8
, pp. 68
-
-
Pande, V.S.1
Grosberg, A.Y.2
Tanaka, T.3
Rokhsar, D.S.4
-
20
-
-
0028174310
-
-
Šali, A.; Shakhnovich, E.; Karplus, M. Nature 1994, 369, 248.
-
(1994)
Nature
, vol.369
, pp. 248
-
-
Šali, A.1
Shakhnovich, E.2
Karplus, M.3
-
22
-
-
0029781355
-
-
Dinner, A. R.; Šali, A.; Karplus, M. Proc. Natl. Acad. Sci. U.S.A. 1996, 93, 8356.
-
(1996)
Proc. Natl. Acad. Sci. U.S.A.
, vol.93
, pp. 8356
-
-
Dinner, A.R.1
Šali, A.2
Karplus, M.3
-
24
-
-
0031686333
-
-
Dinner, A. R.; So., S.-S.; Karplus, M. Proteins 1998, 33, 177.
-
(1998)
Proteins
, vol.33
, pp. 177
-
-
Dinner, A.R.1
So, S.-S.2
Karplus, M.3
-
25
-
-
0001563395
-
-
Du, R.; Pande, V. S.; Grosberg, A. Y.; Tanaka, T.; Shakhnovich, E. S. J. Chem. Phys. 1998, 108, 334.
-
(1998)
J. Chem. Phys.
, vol.108
, pp. 334
-
-
Du, R.1
Pande, V.S.2
Grosberg, A.Y.3
Tanaka, T.4
Shakhnovich, E.S.5
-
26
-
-
0028053187
-
-
Dobson, C. M.; Evans, P. A.; Radford, S. E. Trends Biochem. Sci. 1994, 19, 31.
-
(1994)
Trends Biochem. Sci.
, vol.19
, pp. 31
-
-
Dobson, C.M.1
Evans, P.A.2
Radford, S.E.3
-
29
-
-
36549099979
-
-
Frantz, D. D.; Freeman, D. L.; Doll, J. D. J. Chem. Phys. 1990, 93, 2769.
-
(1990)
J. Chem. Phys.
, vol.93
, pp. 2769
-
-
Frantz, D.D.1
Freeman, D.L.2
Doll, J.D.3
-
30
-
-
5744249209
-
-
Metropolis, N.; Rosenbluth, A. W.; Rosenbluth, M. N.; Teller, A. H.; Teller, E. J. Chem. Phys. 1953, 21, 1087.
-
(1953)
J. Chem. Phys.
, vol.21
, pp. 1087
-
-
Metropolis, N.1
Rosenbluth, A.W.2
Rosenbluth, M.N.3
Teller, A.H.4
Teller, E.5
-
32
-
-
0030967896
-
-
Guo, Z.; Brooks, C. L., III; Boczko, E. M. Proc. Natl. Acad. Sci. U.S.A. 1997, 94, 10161.
-
(1997)
Proc. Natl. Acad. Sci. U.S.A.
, vol.94
, pp. 10161
-
-
Guo, Z.1
Brooks III, C.L.2
Boczko, E.M.3
-
33
-
-
0026751786
-
-
Radford, S. E.; Dobson, C. M.; Evans, P. A. Nature 1992, 358, 302.
-
(1992)
Nature
, vol.358
, pp. 302
-
-
Radford, S.E.1
Dobson, C.M.2
Evans, P.A.3
-
34
-
-
0028944346
-
-
Gutin, A. M.; Abkevich, V. I.; Shakhnovich, E. I. Biochemistry 1995, 34, 3066.
-
(1995)
Biochemistry
, vol.34
, pp. 3066
-
-
Gutin, A.M.1
Abkevich, V.I.2
Shakhnovich, E.I.3
-
35
-
-
0028801308
-
-
Finkelstein, A. V.; Badretdinov, A. Y.; Gutin, A.-M. Proteins 1995, 23, 142.
-
(1995)
Proteins
, vol.23
, pp. 142
-
-
Finkelstein, A.V.1
Badretdinov, A.Y.2
Gutin, A.-M.3
-
37
-
-
0028024928
-
-
Abkevich, V. I.; Gutin, A. M.; Shakhnovich, E. I. Biochemistry 1994, 33, 10026.
-
(1994)
Biochemistry
, vol.33
, pp. 10026
-
-
Abkevich, V.I.1
Gutin, A.M.2
Shakhnovich, E.I.3
-
38
-
-
36448999595
-
-
Abkevich, V. I.; Gutin, A. M.; Shakhnovich, E. I. J. Chem. Phys. 1994, 101, 6052.
-
(1994)
J. Chem. Phys.
, vol.101
, pp. 6052
-
-
Abkevich, V.I.1
Gutin, A.M.2
Shakhnovich, E.I.3
-
39
-
-
0030334626
-
-
Mirny, L. A.; Abkevich, V.; Shakhnovich, E. I. Folding Des. 1996, 1, 103.
-
(1996)
Folding Des.
, vol.1
, pp. 103
-
-
Mirny, L.A.1
Abkevich, V.2
Shakhnovich, E.I.3
-
40
-
-
0033121095
-
-
Dinner, A. R.; Abkevich, V.; Shakhnovich, E.; Karplus, M. Proteins 1999, 35, 34.
-
(1999)
Proteins
, vol.35
, pp. 34
-
-
Dinner, A.R.1
Abkevich, V.2
Shakhnovich, E.3
Karplus, M.4
-
45
-
-
21944445652
-
-
note
-
10,12). We use the term "reaction coordinates" to describe their "transition coordinates" because we feel that a generalized notion of reaction coordinates is already prevalent in the literature of complex systems (for example, see ref 8).
-
-
-
-
48
-
-
0016696599
-
-
Taketomi, H.; Ueda, Y.; Gō, N. Int. J. Peptide Protein Res. 1975, 7, 445.
-
(1975)
Int. J. Peptide Protein Res.
, vol.7
, pp. 445
-
-
Taketomi, H.1
Ueda, Y.2
Go, N.3
-
49
-
-
0031933291
-
-
Chung, M. S.; Neuwald, A. F.; Wilbur, W. J. Folding Des. 1997, 3, 51.
-
(1997)
Folding Des.
, vol.3
, pp. 51
-
-
Chung, M.S.1
Neuwald, A.F.2
Wilbur, W.J.3
-
52
-
-
0030928753
-
-
Berry, R. S.; Elmaci, N.; Rose, J. P.; Vekhter, B. Proc. Natl. Acad. Sci. U.S.A. 1997, 94, 9520.
-
(1997)
Proc. Natl. Acad. Sci. U.S.A.
, vol.94
, pp. 9520
-
-
Berry, R.S.1
Elmaci, N.2
Rose, J.P.3
Vekhter, B.4
-
53
-
-
0026013162
-
-
Miranker, A.; Radford, S. E.; Karplus, M.; Dobson, C. M. Nature 1991, 349, 633.
-
(1991)
Nature
, vol.349
, pp. 633
-
-
Miranker, A.1
Radford, S.E.2
Karplus, M.3
Dobson, C.M.4
-
54
-
-
0027770910
-
-
Miranker, A.; Robinson, C. V.; Radford, S. E.; Aplin, R. T.; Dobson, C. M. Science 1993, 262, 896.
-
(1993)
Science
, vol.262
, pp. 896
-
-
Miranker, A.1
Robinson, C.V.2
Radford, S.E.3
Aplin, R.T.4
Dobson, C.M.5
-
56
-
-
0030917229
-
-
Kiefhaber, T.; Bachmann, A.; Wildegger, G.; Wagner, C. Biochemistry 1997, 36, 5108.
-
(1997)
Biochemistry
, vol.36
, pp. 5108
-
-
Kiefhaber, T.1
Bachmann, A.2
Wildegger, G.3
Wagner, C.4
-
58
-
-
0023705432
-
-
Roder, H.; Elöve, G. A.; Englander, W. S. Nature 1988, 335, 700.
-
(1988)
Nature
, vol.335
, pp. 700
-
-
Roder, H.1
Elöve, G.A.2
Englander, W.S.3
-
59
-
-
0028352044
-
-
Elöve, G. A.; Bhuyan, A. K.; Roder, H. Biochemistry 1994, 33, 6925.
-
(1994)
Biochemistry
, vol.33
, pp. 6925
-
-
Elöve, G.A.1
Bhuyan, A.K.2
Roder, H.3
-
60
-
-
0028402689
-
-
Sosnick, T. R.; Mayne, L.; Hiller, R.; Englander, S. W. Nature Struct. Biol. 1994, 1, 149.
-
(1994)
Nature Struct. Biol.
, vol.1
, pp. 149
-
-
Sosnick, T.R.1
Mayne, L.2
Hiller, R.3
Englander, S.W.4
-
61
-
-
0028426938
-
-
Sinclair, J. F.; Ziegler, M. M.; Baldwin, T. O. Nature Struct. Biol. 1994, 1, 320.
-
(1994)
Nature Struct. Biol.
, vol.1
, pp. 320
-
-
Sinclair, J.F.1
Ziegler, M.M.2
Baldwin, T.O.3
-
62
-
-
0029027663
-
-
Fisher, A. J.; Raushel, F. M.; Baldwin, T. O.; Rayment, I. Biochemistry 1995, 33, 6581.
-
(1995)
Biochemistry
, vol.33
, pp. 6581
-
-
Fisher, A.J.1
Raushel, F.M.2
Baldwin, T.O.3
Rayment, I.4
-
66
-
-
0029049321
-
-
Schindler, T.; Herrier, M.; Marahiel, M. A.; Schmid, F. X. Nat. Struct. Biol. 1995, 2, 663.
-
(1995)
Nat. Struct. Biol.
, vol.2
, pp. 663
-
-
Schindler, T.1
Herrier, M.2
Marahiel, M.A.3
Schmid, F.X.4
-
67
-
-
0343632363
-
-
Eaton, W. A.; Muñoz, V.; Thompson, P. A.; Chan, C.-K.; Hofrichter, J. Curr. Opin. Struct. Biol. 1997, 7, 10.
-
(1997)
Curr. Opin. Struct. Biol.
, vol.7
, pp. 10
-
-
Eaton, W.A.1
Muñoz, V.2
Thompson, P.A.3
Chan, C.-K.4
Hofrichter, J.5
-
68
-
-
0032147243
-
-
Socci, N. D.; Onuchic, J. N.; Wolynes, P. G. Proteins 1998, 32, 136.
-
(1998)
Proteins
, vol.32
, pp. 136
-
-
Socci, N.D.1
Onuchic, J.N.2
Wolynes, P.G.3
-
70
-
-
0030057477
-
-
Khorasanizadeh, S.; Peters, I. D.; Roder, H. Nature Struct. Biol. 1996, 3, 193.
-
(1996)
Nature Struct. Biol.
, vol.3
, pp. 193
-
-
Khorasanizadeh, S.1
Peters, I.D.2
Roder, H.3
-
72
-
-
0029633187
-
-
Nelson, M.; Humphrey, W.; Gursoy, A.; Dalke, A.; Kalé, L.; Skeel, R.; Schulten, K.; Kufrin, R. Comput. Phys. Commun. 1995, 91, 111.
-
(1995)
Comput. Phys. Commun.
, vol.91
, pp. 111
-
-
Nelson, M.1
Humphrey, W.2
Gursoy, A.3
Dalke, A.4
Kalé, L.5
Skeel, R.6
Schulten, K.7
Kufrin, R.8
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