-
1
-
-
33947091990
-
A method for predicting nucleation sites for protein folding based on hydrophobic contacts
-
Matheson, R.R. & Scheraga, H.A. (1978). A method for predicting nucleation sites for protein folding based on hydrophobic contacts. Macromolecules 11, 814-829.
-
(1978)
Macromolecules
, vol.11
, pp. 814-829
-
-
Matheson, R.R.1
Scheraga, H.A.2
-
2
-
-
0015597839
-
Nucleation, rapid folding, and globular intrachain regions in proteins
-
Wetlaufer, D. (1973). Nucleation, rapid folding, and globular intrachain regions in proteins. Proc. Natl Acad. Sci. USA 70, 697-701.
-
(1973)
Proc. Natl Acad. Sci. USA
, vol.70
, pp. 697-701
-
-
Wetlaufer, D.1
-
3
-
-
0028024928
-
Specific nucleus as the transition state for protein folding. Evidence from the lattice model
-
Abkevich, V.l., Gutin, A.M. & Shakhnovich, E.I. (1994). Specific nucleus as the transition state for protein folding. Evidence from the lattice model. Biochemistry 2, 10026-10036.
-
(1994)
Biochemistry
, vol.2
, pp. 10026-10036
-
-
Abkevich, V.L.1
Gutin, A.M.2
Shakhnovich, E.I.3
-
4
-
-
0029010695
-
Kinetics of protein folding: Nucleation mechanism, time scales, and pathways
-
Quo, Z. & Thirumalai, D. (1995). Kinetics of protein folding: nucleation mechanism, time scales, and pathways. Biopolymers 36, 83-103.
-
(1995)
Biopolymers
, vol.36
, pp. 83-103
-
-
Quo, Z.1
Thirumalai, D.2
-
5
-
-
0028150192
-
Hydrophobic 'collapse' in a cyclic hexapeptide: Computer simulations of CHDLFC and CAAAAC in water
-
Simmerling, C. & Eiber, R. (1994). Hydrophobic 'collapse' in a cyclic hexapeptide: computer simulations of CHDLFC and CAAAAC in water. J. Am. Chem. Soc. 116, 2534-2547.
-
(1994)
J. Am. Chem. Soc.
, vol.116
, pp. 2534-2547
-
-
Simmerling, C.1
Eiber, R.2
-
6
-
-
0029670994
-
Conserved residue and the mechanisms of protein folding
-
Shakhnovich, E., Abkevich, V. & Ptitsyn, O. (1996). Conserved residue and the mechanisms of protein folding. Nature 379, 96-98.
-
(1996)
Nature
, vol.379
, pp. 96-98
-
-
Shakhnovich, E.1
Abkevich, V.2
Ptitsyn, O.3
-
7
-
-
0028856785
-
Optimization of rates of protein folding: The nucleation-condensation mechanism and its implications
-
Fersht, A.R. (1995). Optimization of rates of protein folding: the nucleation-condensation mechanism and its implications. Proc. Natl Acad. Sci. USA 92, 10869-10873.
-
(1995)
Proc. Natl Acad. Sci. USA
, vol.92
, pp. 10869-10873
-
-
Fersht, A.R.1
-
8
-
-
0028868995
-
The structure of the transition state for folding of chymotrypsin inhibitor 2 analyzed protein engineering methods: Evidence for a nucleation-condensation mechanism for protein folding
-
Itzhaki, L.S., Otzen, D.E. & Fersht, A.R. (1995). The structure of the transition state for folding of chymotrypsin inhibitor 2 analyzed protein engineering methods: evidence for a nucleation-condensation mechanism for protein folding. J. Mol. Biol. 254, 260-288.
-
(1995)
J. Mol. Biol.
, vol.254
, pp. 260-288
-
-
Itzhaki, L.S.1
Otzen, D.E.2
Fersht, A.R.3
-
9
-
-
0030917229
-
Direct measurement of nucleation and growth rates in lysozyme folding
-
in press
-
Kiefhaber, T., Bachmann, A., Wildegger, G. & Wegner, C. (1997). Direct measurement of nucleation and growth rates in lysozyme folding. Biochemistry, in press.
-
(1997)
Biochemistry
-
-
Kiefhaber, T.1
Bachmann, A.2
Wildegger, G.3
Wegner, C.4
-
10
-
-
0028402689
-
The barriers in protein folding
-
Sosnick, T.R., Mayne, L, Hiller, R. & Englander, S.W. (1994). The barriers in protein folding. Wat Struct. Biol. 1, 149-156.
-
(1994)
Wat Struct. Biol.
, vol.1
, pp. 149-156
-
-
Sosnick, T.R.1
Mayne, L.2
Hiller, R.3
Englander, S.W.4
-
11
-
-
0028835443
-
Nucleation mechanism and theoretical predictions for hydrogen-exchange labelling experiments
-
Thirumalai, D & Guo, Z. (1995). Nucleation mechanism and theoretical predictions for hydrogen-exchange labelling experiments. Biopolymers 35, 137-140.
-
(1995)
Biopolymers
, vol.35
, pp. 137-140
-
-
Thirumalai, D.1
Guo, Z.2
-
12
-
-
0001103473
-
Kinetics of folding of proteins and RNA
-
Thirumalai, D. & Woodson, S.A. (1996). Kinetics of folding of proteins and RNA. Acc. Chem. Res. 29, 433-439.
-
(1996)
Acc. Chem. Res.
, vol.29
, pp. 433-439
-
-
Thirumalai, D.1
Woodson, S.A.2
-
13
-
-
0042136304
-
-
(Doniach, S., ed.) Plenum Press, New York
-
Thirumalai, D. (1994). In Theoretical Perspectives on In Vitro and In Vivo Protein Folding in Statistical Mechanics, Protein Structure, and Protein Substrate Interactions. (Doniach, S., ed.) pp. 115-134, Plenum Press, New York.
-
(1994)
Theoretical Perspectives on in Vitro and in Vivo Protein Folding in Statistical Mechanics, Protein Structure, and Protein Substrate Interactions
, pp. 115-134
-
-
Thirumalai, D.1
-
14
-
-
0027318781
-
Kinetics and thermodynamics of folding in model proteins
-
Camacho, C.J. & Thirumalai, D. (1993). Kinetics and thermodynamics of folding in model proteins. Proc. Natl Acad. Sci. USA 90, 6369-6372.
-
(1993)
Proc. Natl Acad. Sci. USA
, vol.90
, pp. 6369-6372
-
-
Camacho, C.J.1
Thirumalai, D.2
-
15
-
-
0000050196
-
From minimal models to real proteins: Time scales for protein folding kinetics
-
Thirumalai, D. (1995). From minimal models to real proteins: time scales for protein folding kinetics. J. Physique I 5, 1457-1467.
-
(1995)
J. Physique I
, vol.5
, pp. 1457-1467
-
-
Thirumalai, D.1
-
16
-
-
0015505381
-
A sequential model of nucleation-dependent protein folding: Kinetic studies of ribonuclease A
-
Tsong, T.Y., Baldwin, R.L & McPhee, P. (1972). A sequential model of nucleation-dependent protein folding: kinetic studies of ribonuclease A. J. Mol. Biol. 63, 453-457.
-
(1972)
J. Mol. Biol.
, vol.63
, pp. 453-457
-
-
Tsong, T.Y.1
Baldwin, R.L.2
McPhee, P.3
-
17
-
-
0027264878
-
Kinematics and thermodynamics of a folding heteropolymer
-
Fukugita, M., Lancaster, D. & Mitchard, N.G. (1993). Kinematics and thermodynamics of a folding heteropolymer. Proc. Natl Acad. Sci. USA 90, 6365-6368.
-
(1993)
Proc. Natl Acad. Sci. USA
, vol.90
, pp. 6365-6368
-
-
Fukugita, M.1
Lancaster, D.2
Mitchard, N.G.3
-
18
-
-
0002689652
-
Thermodynamics of protein folding: A statistical mechanical study of a small all β protein
-
in press
-
Guo, Z. & Brooks, C.L, III (1997). Thermodynamics of protein folding: a statistical mechanical study of a small all β protein. Biopolymers, in press.
-
(1997)
Biopolymers
-
-
Guo, Z.1
Brooks III, C.L.2
-
19
-
-
85050755663
-
Nucleation of crystals from the melt
-
Oxtoby, D.W. (1988). Nucleation of crystals from the melt. Adv. Chem. Phys. 70, 263-296.
-
(1988)
Adv. Chem. Phys.
, vol.70
, pp. 263-296
-
-
Oxtoby, D.W.1
-
20
-
-
84973857317
-
ART 2: Self-organization of stable category recognition codes for analog input patterns
-
Carpenter, G.A. & Grossberg, S. (1987). ART 2: self-organization of stable category recognition codes for analog input patterns. Appl. Optics 26, 4919-4930.
-
(1987)
Appl. Optics
, vol.26
, pp. 4919-4930
-
-
Carpenter, G.A.1
Grossberg, S.2
-
22
-
-
0027393187
-
Statistical clustering techniques for the analysis of long molecular dynamics trajectories: Analysis of 2-2 in trajectories of YPGDY
-
Karpen, M.E., Tobins, DJ. & Brooks, C.L, III. (1993). Statistical clustering techniques for the analysis of long molecular dynamics trajectories: analysis of 2-2 in trajectories of YPGDY. Biochemistry 32, 412-420.
-
(1993)
Biochemistry
, vol.32
, pp. 412-420
-
-
Karpen, M.E.1
Tobins, D.J.2
Brooks III, C.L.3
-
23
-
-
0026643094
-
The nature of folded states of globular proteins
-
Honeycutt, J.D. & Thirumalai, D. (1992). The nature of folded states of globular proteins. Biopolymers 32, 695-709.
-
(1992)
Biopolymers
, vol.32
, pp. 695-709
-
-
Honeycutt, J.D.1
Thirumalai, D.2
-
25
-
-
0029981188
-
Structure of the transition state for folding of a protein derived from experiment and simulation
-
Daggett, V., Li, A., Itzhaki, L.S., Otzen, D.E. & Fersht. A.R. (1996). Structure of the transition state for folding of a protein derived from experiment and simulation. J. Mol. Biol. 257, 430-440.
-
(1996)
J. Mol. Biol.
, vol.257
, pp. 430-440
-
-
Daggett, V.1
Li, A.2
Itzhaki, L.S.3
Otzen, D.E.4
Fersht, A.R.5
-
26
-
-
0029940033
-
Molecular collapse: The rate-limiting step in two-state cytochrome c folding
-
Sosnick, T.R., Mayne, L & Englander, S.W. (1996). Molecular collapse: the rate-limiting step in two-state cytochrome c folding. Proteins 24, 413-426.
-
(1996)
Proteins
, vol.24
, pp. 413-426
-
-
Sosnick, T.R.1
Mayne, L.2
Englander, S.W.3
-
27
-
-
26344447509
-
106-particle moleculardynamics study of homogeneous nucleation of crystals in a supercooled atomic liquid
-
Swope, W.C. & Andersen, H.C. (1990). 106-particle moleculardynamics study of homogeneous nucleation of crystals in a supercooled atomic liquid. Phys. Rev. B 41, 7042-7053.
-
(1990)
Phys. Rev. B
, vol.41
, pp. 7042-7053
-
-
Swope, W.C.1
Andersen, H.C.2
-
28
-
-
36549094368
-
Molecular dynamics investigation of deeply quenched liquids
-
Yang, J., Gould, H., Klein, W. & Mountain, R.D. (1990). Molecular dynamics investigation of deeply quenched liquids. J. Chem. Phys. 93, 711-723.
-
(1990)
J. Chem. Phys.
, vol.93
, pp. 711-723
-
-
Yang, J.1
Gould, H.2
Klein, W.3
Mountain, R.D.4
-
29
-
-
0025148817
-
A simple statistical field theory of heteropolymer collapse with application to protein folding
-
Bryngelson, J.D. & Wolynes, P.G. (1990). A simple statistical field theory of heteropolymer collapse with application to protein folding. Biopolymers 30, 177-188.
-
(1990)
Biopolymers
, vol.30
, pp. 177-188
-
-
Bryngelson, J.D.1
Wolynes, P.G.2
-
30
-
-
0025368288
-
The metastability of folded states of globular proteins
-
Honeycutt, J.D. & Thirumalai, D. (1990). The metastability of folded states of globular proteins. Proc. Natl Acad. Sci. USA 87, 3526-3529.
-
(1990)
Proc. Natl Acad. Sci. USA
, vol.87
, pp. 3526-3529
-
-
Honeycutt, J.D.1
Thirumalai, D.2
-
31
-
-
0028947257
-
Funnels, pathways, and the energy landscape of protein folding: A synthesis
-
Bryngelson, J.D., Onuchic, J.N., Socci, N.D. & Wolynes, P.G. (1995). Funnels, pathways, and the energy landscape of protein folding: a synthesis. Proteins 21, 167-195.
-
(1995)
Proteins
, vol.21
, pp. 167-195
-
-
Bryngelson, J.D.1
Onuchic, J.N.2
Socci, N.D.3
Wolynes, P.G.4
-
32
-
-
33644923715
-
Modeling the role of disulfide bonds in protein folding
-
Camacho, C.J. & Thirumalai, D. (1995). Modeling the role of disulfide bonds in protein folding. Proteins 22, 28-40.
-
(1995)
Proteins
, vol.22
, pp. 28-40
-
-
Camacho, C.J.1
Thirumalai, D.2
-
33
-
-
0030322669
-
Protein folding funnels: The nature of the transition states ensemble
-
Onuchic, J.N., Socci, N.D., Luthey-Schulten, Z. & Wolynes P.G. (1996). Protein folding funnels: the nature of the transition states ensemble. Fold. Des. 1, 441-450.
-
(1996)
Fold. Des.
, vol.1
, pp. 441-450
-
-
Onuchic, J.N.1
Socci, N.D.2
Luthey-Schulten, Z.3
Wolynes, P.G.4
-
34
-
-
0029151245
-
Rrst principle calculation of the folding free energy of a three helix bundle protein
-
Boczko, E.M. & Brooks, C.L. III. (1995). Rrst principle calculation of the folding free energy of a three helix bundle protein. Science 269, 393-396.
-
(1995)
Science
, vol.269
, pp. 393-396
-
-
Boczko, E.M.1
Brooks III, C.L.2
-
35
-
-
0026447086
-
Extracting information on folding from the amino acid sequence: Accurate predictions for protein regions with preferred conformation in the absence of tertiary interactions
-
Rooman, M.J., Kocher, J-P. & Wodak, S.J. (1992). Extracting information on folding from the amino acid sequence: accurate predictions for protein regions with preferred conformation in the absence of tertiary interactions. Biochemistry 31, 10226-10238.
-
(1992)
Biochemistry
, vol.31
, pp. 10226-10238
-
-
Rooman, M.J.1
Kocher, J.-P.2
Wodak, S.J.3
-
36
-
-
0026458189
-
Extracting information on folding from the amino acid sequence: Consensus regions with preferred conformation in homologous proteins
-
Rooman, M.J. & Wodak, S J. (1992). Extracting information on folding from the amino acid sequence: consensus regions with preferred conformation in homologous proteins. Biochemistry 31, 10239-10249.
-
(1992)
Biochemistry
, vol.31
, pp. 10239-10249
-
-
Rooman, M.J.1
Wodak, S.J.2
-
37
-
-
0029115970
-
Optimal local propensities for model proteins
-
Gorindarajan, S. & Goldstein, R.A. (1995). Optimal local propensities for model proteins. Proteins 22, 413-418.
-
(1995)
Proteins
, vol.22
, pp. 413-418
-
-
Gorindarajan, S.1
Goldstein, R.A.2
-
38
-
-
0030604696
-
Local interactions dominate folding in a simple protein model
-
Unger, R. & Moult, J. (1996). Local interactions dominate folding in a simple protein model. J. Mol. Biol. 259, 988-994.
-
(1996)
J. Mol. Biol.
, vol.259
, pp. 988-994
-
-
Unger, R.1
Moult, J.2
-
39
-
-
0025906759
-
An analysis of protein folding pathways
-
Moult, J. & Unger, R. (1991). An analysis of protein folding pathways. Biochemistry 30, 3816-3824.
-
(1991)
Biochemistry
, vol.30
, pp. 3816-3824
-
-
Moult, J.1
Unger, R.2
-
40
-
-
0027405357
-
Cooperativity in proteinfolding kinetics
-
Dill, K.A., Rebig, K.M. & Chan, H.S. (1993). Cooperativity in proteinfolding kinetics. Proc. Natl Acad. Sci. USA 90, 1942-1946.
-
(1993)
Proc. Natl Acad. Sci. USA
, vol.90
, pp. 1942-1946
-
-
Dill, K.A.1
Rebig, K.M.2
Chan, H.S.3
-
41
-
-
0030979740
-
Folding funnels and energy landscapes of larger proteins within the capillarity approximation
-
Wolynes, P.G. (1997). Folding funnels and energy landscapes of larger proteins within the capillarity approximation. Proc. Natl Acad. Sci. USA 94, 6170-6175.
-
(1997)
Proc. Natl Acad. Sci. USA
, vol.94
, pp. 6170-6175
-
-
Wolynes, P.G.1
|