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Volumn 1, Issue 7, 2001, Pages 345-348

Deposition and Characterization of Extended Single-Stranded DNA Molecules on Surfaces

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Indexed keywords


EID: 0007616320     PISSN: 15306984     EISSN: None     Source Type: Journal    
DOI: 10.1021/nl0155476     Document Type: Article
Times cited : (88)

References (36)
  • 20
    • 0347165995 scopus 로고    scopus 로고
    • note
    • 22 During DNA solution translation, a rapidly evaporating (<3 s) film of liquid trailed 1-4 mm behind the moving droplet; after the solution had evaporated the mica was again rinsed with water and dried with compressed air prior to imaging. We did not attempt to study the effect of relative humidity on ssDNA deposition and alignment, but small, day-to-day variations in ambient humidity did not appear to influence our data. Moreover, no significant change in DNA deposition and alignment was observed with poly-L-lys surface incubation times in the range of 2-8 min, or droplet translation velocities varying between 0.2 and 1.0 mm/s, although we did not perform a systematic study of these variables.
  • 21
    • 0346535696 scopus 로고    scopus 로고
    • note
    • DNA was obtained from New England Biolabs (Beverly, MA) and diluted to either 2 ng/μL (ΦX174 and M13mp18) or 5 ng/μL (λ) in TE buffer. Higher concentrations of DNA led to a larger number of molecules deposited on the mica substrate. Prior to surface deposition, M13mp18 ssDNA was heated to 95°C for 2 min to disrupt secondary structure, and A ssDNA was made by denaturing dsDNA at 95°C for 5 min. Elongated ssDNA on surfaces could also be generated from solutions where the TE buffer was as dilute as 100 μM Tris, 10 μM EDTA.
  • 23
    • 0347796010 scopus 로고    scopus 로고
    • note
    • 26 so ssDNA extension and alignment may be occurring mostly by this mechanism rather than surface tension.
  • 28
    • 0346535697 scopus 로고    scopus 로고
    • note
    • Images were obtained using a Multimode IIIa AFM and microfabricated Si cantilever-tips (Digital Instruments, Santa Barbara, CA). Vibrational noise was damped with an active isolation system (MOD1-M, Halcyonics, Goettingen, Germany). Typical imaging parameters were (i) resonant frequencies, 60-90 kHz; (ii) free oscillation amplitude, 0.5-1.0 V; (iii) setpoint, 0.3-0.7 V; (iv) scan rate, 1.5-2.0 Hz. Images were processed offline by flattening to remove the background slope.
  • 29
    • 0346535695 scopus 로고    scopus 로고
    • note
    • 2,5
  • 32
    • 0345904700 scopus 로고    scopus 로고
    • note
    • 3,26 so the droplet trajectory on the surface was marked as a reference for the subsequent alignment step. The mica was rinsed with water, dried with compressed air, treated with 25 μL of 10 ppm poly-L-lysine, rinsed again with water, and dried with compressed air. A 1 μL droplet of ΦX174 ssDNA in TE buffer was then moved across the surface as described above, except that the direction of translation was chosen to align ΦX174 perpendicular to λ. Last, the mica was rinsed with water and dried with compressed air prior to imaging.
  • 33
    • 0345904701 scopus 로고    scopus 로고
    • note
    • The order of deposition (ds before ssDNA) was critical because 1 ppm poly-L-lysine was the highest concentration surface treatment for which A could be reproductbly aligned. Experiments done in the reverse order showed that the ssDNA attachment was also stable to further surface manipulations; however, the surface preparation for ΦX174 (10 ppm poly-L-lysine) bound λ dsDNA too tightly for alignment in the second step.


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.