Identification of genes in cassava that are differentially expressed during infection with Xanthomonas axonopodis pv. manihotis

Molecular Plant Pathology

Volumn 5, Issue 6, 2004, Pages 549-558

  Santaella, Marcella ^a,d   Suárez, Edna ^a   López, Camilo ^a,b   González, Carolina ^a,b   Mosquera, Gloria ^a   Restrepo, Silvia ^a   Tohme, Joe ^a   Badillo, Alfredo ^c   Verdier, Valérie ^b  

^a Biotechnology Research Unit   (Colombia)

^b UNIVERSITÉ DE PERPIGNAN   (France)

^c UNIVERSIDAD DE LOS ANDES   (Colombia)

^d UNIVERSITY OF COLOGNE   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIA (MICROORGANISMS); MANIHOT ESCULENTA; XANTHOMONAS; XANTHOMONAS AXONOPODIS; XANTHOMONAS AXONOPODIS PV. MANIHOTIS;

EID: 9944257097     PISSN: 14646722     EISSN: None     Source Type: Journal    
DOI: 10.1111/J.1364-3703.2004.00254.X     Document Type: Article

References (52)

1. Altschul, S.F., Madden, T.L., Schaffer, A.A., Zhang, J., Zhang, Z., Miller, W. and Lipman, D.J. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucl. Acids Res. 25, 3389-3402.
2. Anand, A., Zhou, T., Trick, H.N., Gill, B.S., Bockus, W.W. and Muthukrishnan, S. (2003) Greenhouse and field testing of transgenic wheat plants stably expressing genes for thaumatin-like protein, chitinase and glucanase against Fusarium graminearum. J. Exp. Bot. 54, 1101-1111.
3. Avrova, A.O., Venter, E., Birch, P.R. and Whisson, S.C. (2003) Profiling and quantifying differential gene transcription in Phytophthora infestans prior to and during the early stages of potato infection. Fungal Genet. Biol. 40, 4-14.
4. Bachem., C.W., van der Hoeven, R.S., de Bruijn, S.M., Vreugdenhil, D., Zabeau, M. and Visser, R.G. (1996) Visualization of differential gene expression using a novel method of RNA fingerprinting based on AFLP: analysis of gene expression during potato tuber development. Plant J. 9, 745-753.
5. van der Biezen, E.A., Juwana, H., Parker, J.E. and Jones, J.D. (2000) cDNA-AFLP display for the isolation of Peronospora parasitica genes expressed during infection in Arabidopsis thaliana. Mol. Plant-Microbe Interact. 13, 895-898.
6. Blumwald, E., Aharon, G.S. and Lam, B.C.H. (1998) Early signal transduction pathways in plant-pathogen interactions. Trends Plant Sci. 3, 342-346.
7. Boher, B., Kpémoua, K., Nicole, M., Luisetti, J. and Geiger, J.P. (1995) Ultrastructure of interactions between cassava and Xanthomonas campestris, pv. manihotis: cytochemistry of cellulose and pectin degradation in a susceptible variety. Phytopathology, 85, 777-788.
8. Boher, B. and Verdier, V. (1994) Cassava bacterial blight in Africa: the state of knowledge and implications for designing control strategies. African Crop Sci. J. 2, 1-5.
9. Breyne, P., Dreesen, R., Cannoot, B., Rombaut, D., Vandepoele, K., Rombauts, S., Vanderhaeghen, R., Inze, D. and Zabeau, M. (2003) Quantitative cDNA-AFLP analysis for genome-wide expression studies. Mol. Genet. Genomics. 269, 173-179.
10. Choi, J.J., Klosterman, S.J. and Hadwiger, L.A. (2001) A comparison of the effects of DNA-damaging agents and biotic elicitors on the induction of plant defense genes, nuclear distortion, and cell death. Plant Physiol. 125, 752-762.
11. Cooper, B. (2001) Collateral gene expression changes induced by distinct plant viruses during the hypersensitive resistance reaction in Chenopodium amaranticolor. Plant J. 26, 339-349.
12. Dargeviciute, A., Roux, C., Decreux, A., Sitbon, F. and Perrot-Rechenmann, C. (1998) Molecular cloning and expression of the early auxin-responsive Aux/IAA gene family in Nicotiana tabacum. Plant Cell Physiol. 39, 933-1002.
13. Dellagi, A., Birch, P.R., Heilbronn, J., Lyon, G.D. and Toth, I.K. (2000) cDNA-AFLP analysis of differential gene expression in the prokaryotic plant pathogen Erwinia carotovora. Microbiology, 146, 165-171.
14. Ditt, R.F., Nester, E.W. and Comai, L. (2001) Plant gene expression response to Agrobacterium tumefaciens. Proc. Natl Acad. Sci. USA, 98, 10954-10959.
15. Donson, J., Fang, Y., Espiritu-Santo, G., Xing, W., Salazar, A., Miyamoto, S., Armendarez, V. and Volkmuth, W. (2002) Comprehensive gene expression analysis by transcript profiling. Plant Mol. Biol. 48, 75-97.
16. Durrant, W.E., Rowland, O., Piedras, P., Hammond-Kosack, K.E. and Jones, J.D. (2000) cDNA-AFLP reveals a striking overlap in race-specific resistance and wound response gene expression profiles. Plant Cell, 12, 963-977.
17. Ellis, J., Dodds, P. and Pryor, T. (2000) The generation of plant disease resistance gene specificities. Trends Plant Sci. 5, 373-379.
18. Fluhr, R. (2001) Sentinels of disease. Plant resistance genes. Plant Physiol. 127, 1367-1374.
19. Fregene, M., Angel, F., Gómez, R., Rodríguez, F., Chavarriaga, P., Roca, W., Tohme, J. and Bonierbale, M. (1997) A molecular genetic map of cassava (Manihot esculenta Crantz). Theor. Appl. Genet. 95, 431-441.
20. Hahn, S.K., Howland, A.K. and Terry, E.R. (1980) Correlated resistance of cassava to mosaic and bacterial blight diseases. Euphytica, 29, 305-311.
21. Hall, T.C., Ma, Y., Buchbinder, B.U., Pyne, J.W., Sun, S.M. and Bliss, F.A. (1979) Messenger RNA for G1 protein of french bean seeds: cell-free translation and product characterization. Proc. Natl Acad. Sci. USA, 75, 3196-3200.
22. Jorge, V., Fregene, M.A., Duque, M.C., Bonierbale, M.W., Tohme, J. and Verdier, V. (2000) Genetic mapping of resistance to bacterial blight disease in cassava (Manihot esculenta Crantz). Theor. Appl. Genet. 101, 865-872.
23. Jorge, V., Fregene, M., Velez, C.M., Duque, M.C., Tohme, J. and Verdier, V. (2001) QTL analysis of field resistance to Xanthomonas axonopodis pv. manihotis in cassava. Theor. Appl. Genet. 102, 564-571.
24. Kazan, K., Schenk, P.M., Wilson, I. and Manners, J.M. (2001) DNA microarrays; new tools in the analysis of plant defense response. Mol. Plant Pathol. 2, 177-185.
25. Kpémoua, K., Boher, B., Nicole, M., Calatayud, P. and Geiger, J.P. (1996) Cytochemistry of defense responses in cassava infected by Xanthomonas campestris pv. manihotis. Can. J. Microbiol. 42, 1131-1143.
26. Liang, P. and Pardee, A.B. (1992) Differential display of eukaryotic messenger RNA by means of the polymerase chain reaction. Science, 257, 967-971.
27. Ligterink, W., Kroj, T., zur Nieden, U., Hirt, H. and Scheel, D. (1997) Receptor-mediated activation of a MAP kinase in pathogen defense of plants. Science, 276, 2054-2057.
28. Lo, S.C., Hipskind, J.D. and Nicholson, R.L. (1999) cDNA cloning of a sorghum pathogenesis-related protein (PR-10) and differential expression of defense-related genes following inoculation with Cochliobolus heterostrophus or Colletotrichum sublineolum. Mol. Plant-Microbe Interact. 12, 479-489.
29. López, C., Jorge, V., Piégu, B., Mba, C., Cortes, D., Restrepo, S., Soto, M., Laudié, M., Berge, C., Cooke, R., Delseny, M., Tohme, J. and Verdier, V. (2004) A unigene catalogue of 5700 expressed genes in cassava (Manihot esculenta). Plant Mol Biol., in press.
30. Lozano, J.C. (1986) Cassava bacterial blight: a manageable disease. Plant Dis. 70, 1089-1093.
31. Mahalingam, R., Gómez-Buitrago, A.M., Eckardt, N., Shah, N., Guevara-Garcia, A., Day, P., Raina R. and Fedoroff, N.V. (2003) Characterizing the stress/defense transcriptome of Arabidopsis. Genome Biol. 4, 1-14.
32. Marois, E., Van den Ackerveken, G. and Bonas, U. (2002) The Xanthomonas type III effector protein AvrBs3 modulates plant gene expression and induces cell hypertophy in the susceptible host. Mol. Plant-Microbe Interact. 15, 637-646.
33. Mba, C., Stephenson, P., Edwards, K., Melzer, S., Nkumbira, J., Gullberg, U., Appel, K., Gale, M., Tohme, J. and Fregene, M. (2001) Simple sequence repeat (SSR) markers survey of the cassava (Manihot esculenta Crantz) genome: towards an SSR-based molecular genetic map of cassava. Theor. Appl. Genet. 102, 21-31.
34. McDowell, J.M. and Woffenden, B.J. (2003) Plant disease resistance genes: recent insights and potential applications. Trends Biotechnol. 21, 178-183.
35. Miller, R.T., Christoffels, A.G., Gopalakrishnan, C., Burke, J., Ptitsyn, A.A., Broveak, T.R. and Hide, W.A. (1999) A comprehensive approach to clustering of expressed human gene sequence: the sequence tag alignment and consensus knowledge base. Genome Res. 9, 1143-1155.
36. Neveu, C., Jaubert, S., Abad, P. and Castagnone-Sereno, P. (2003) A set of genes differentially expressed between avirulent and virulent Meloidogyne incognita near-isogenic lines encode secreted proteins. Mol. Plant-Microbe Interact. 16, 1077-1084.
37. Nöel, L., Thieme, F., Nennstiel, D. and Bonas, U. (2001) cDNA-AFLP analysis unravels a genome-wide hrpG-regulon in the plant pathogen Xanthomonas campestris pv. vesicatoria. Mol. Microbiol. 41, 1271-1281.
38. Pereira, L.F., Goodwin, P.H. and Erickson, L. (2003) Cloning of a peroxidase gene from cassava with a potential as a molecular marker for resistance to bacterial blight. Brazilian Arch. Biol. Techn. 46, 149-154.
39. Pereira, A.J., Lapenta, A.S., Vidigal-Filho, P.S. and Machado, M.F.P.S. (2001) Differential esterase expression in leaves of Manihot esculenta Crantz infected with Xanthomonas axonopodis pv. manihotis. Bioch. Gen. 39, 289-296.
40. Petters, J., Gobel, C., Scheel, D. and Rosahl, S. (2002) A pathogen-responsive cDNA from potato encodes a protein with homology to a phosphate starvation-induced phosphatase. Plant Cell Physiol. 43, 1049-1053.
41. Qin, L., Overmars, H., Helder, J., Popeijus, H., van der Voort, J.R., Groenink, W., van Koert, P., Scots, A., Bakker, J. and Smant, G. (2000) An efficient cDNA-AFLP-based strategy for the identification of putative pathogenicity factors from the potato cyst nematode Globodera rostochiensis. Mol. Plant-Microbe Interact. 13, 830-836.
42. Ramonell, K.M. and Somerville, S. (2002) The genomics parade of defense responses: to infinity and beyond. Curr. Opin. Plant Biol. 5, 291-294.
43. Restrepo, S., Duque, M.C. and Verdier, V. (2000a) Resistance spectrum of selected Manihot esculenta genotypes under field conditions. Field Crop Res. 65, 69-77.
44. Restrepo, S., Duque, M.C. and Verdier, V. (2000b) Characterization of pathotypes among isolates of Xanthomonas axonopodis pv. manihotis in Colombia. Plant Pathol. 49, 680-687.
45. Restrepo, S., Velez, C.M., Duque, M.C. and Verdier, V. (2004) Genetic structure and population dynamics of Xanthomonas axonopodis pv. manihotis populations in Colombia from 1995 to 1999. Appl. Environ. Microbiol. 70, 255-261.
46. Romeis, T., Piedras, P., Zhang, S., Klessig, D.F. and Hirt, H. (1999) Rapid Avr9- and Cf-9-dependent activation of MAP kinases in tobacco cell cultures and leaves: convergence of resistance gene, elicitor, wound, and salicylate responses. Plant Cell, 11, 273-287.
47. Rose, L.E., Bittner-Eddy, P.D., Langley, C.H., Holub, E.B., Michelmore, R.W. and Beynon, J.L. (2004) The maintenance of extreme amino acid diversity at the disease resistance gene, RPP13 in Arabidopsis thaliana. Genetics, 166, 1517-1527.
48. Sánchez, G., Restrepo, S., Duque, M.C., Fregene, M., Bonierbale, M. and Verdier, V. (1999) AFLP assessment of genetic variability in cassava accessions (Manihot esculenta) resistant and susceptible to the cassava bacterial blight (CBB). Genome, 42, 163-172.
49. Shirasu, K. and Schulze-Lefert, P. (2003) Complex formation, promiscuity and multi-functionality: protein interactions in disease resistance pathways. Trends Plant Sci. 8, 252-258.
50. Song, J., Bradeen, J.M., Naess, S.K., Raasch, J.A., Wielgus, S.M., Haberlach, G.T., Liu, J., Kuang, H., Austin-Phillips, S., Buell, C.R., Helgeson, J.P. and Jiang, J. (2003) Gene RB cloned from Solanum bulbocastanum confers broad spectrum resistance to potato late blight. Proc. Natl Acad. Sci. USA, 100, 9128-9133.
51. Sullivan, T.A., Jakobek, J.L. and Lindgren, P.B. (2001) Cloning and characterization of a bean UDP-glucosyltransferase cDNA expressed during plant-bacterial interactions. Mol. Plant-Microbe Interact. 14, 90-92.
52. Wan, J., Dunning, F.M. and Bent, A.F. (2002) Probing plant-pathogen interactions and downstream defense signaling using DNA microarrays. Funct. Integr. Genomics, 2, 259-273.