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Volumn 50, Issue 4, 2004, Pages 237-245

In vitro alterations of intestinal bacterial microbiota in fecal samples during storage

Author keywords

Bacterial diversity; Bacterial growth; Enteric flora; Real time polymerase chain reaction (PCR); SSCP; Storage

Indexed keywords

BACTERIAL DNA;

EID: 9944245052     PISSN: 07328893     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.diagmicrobio.2004.08.012     Document Type: Article
Times cited : (93)

References (50)
  • 3
    • 0025835296 scopus 로고
    • Fast and sensitive silver staining of DNA in polyacrylamide gels
    • Bassam B.J., Caetano-Anolles G., Gresshoff P.M. Fast and sensitive silver staining of DNA in polyacrylamide gels. Anal Biochem. 196:1991;80-83
    • (1991) Anal Biochem , vol.196 , pp. 80-83
    • Bassam, B.J.1    Caetano-Anolles, G.2    Gresshoff, P.M.3
  • 4
    • 0034775213 scopus 로고    scopus 로고
    • Allergy development and the intestinal microflora during the first year of life
    • Bjorksten B., Sepp E., Julge K., Voor T., Mikelsaar M. Allergy development and the intestinal microflora during the first year of life. J Allergy Clin Immunol. 108:2001;516-520
    • (2001) J Allergy Clin Immunol , vol.108 , pp. 516-520
    • Bjorksten, B.1    Sepp, E.2    Julge, K.3    Voor, T.4    Mikelsaar, M.5
  • 5
    • 0033724666 scopus 로고    scopus 로고
    • Specific detection of Bifidobacterium strains in a pharmaceutical probiotic product and in human feces by polymerase chain reaction
    • Brigidi P., Vitali B., Swennen E., Altomare L., Rossi M., Matteuzzi D. Specific detection of Bifidobacterium strains in a pharmaceutical probiotic product and in human feces by polymerase chain reaction. Syst Appl Microbiol. 23:2000;391-399
    • (2000) Syst Appl Microbiol , vol.23 , pp. 391-399
    • Brigidi, P.1    Vitali, B.2    Swennen, E.3    Altomare, L.4    Rossi, M.5    Matteuzzi, D.6
  • 7
    • 0031892290 scopus 로고    scopus 로고
    • Design and evaluation of a 16S rRNA-targeted oligonucleotide probe for specific detection and quantitation of human faecal Bacteroides populations
    • Dore J., Sghir A., Hannequart-Gramet G., Corthier G., Pochart P. Design and evaluation of a 16S rRNA-targeted oligonucleotide probe for specific detection and quantitation of human faecal Bacteroides populations. Syst Appl Microbiol. 21:1998;65-71
    • (1998) Syst Appl Microbiol , vol.21 , pp. 65-71
    • Dore, J.1    Sghir, A.2    Hannequart-Gramet, G.3    Corthier, G.4    Pochart, P.5
  • 10
    • 0036139245 scopus 로고    scopus 로고
    • Molecular diversity of Lactobacillus spp. and other lactic acid bacteria in the human intestine as determined by specific amplification of 16S ribosomal DNA
    • Heilig H.G., Zoetendal E.G., Vaughan E.E., Marteau P., Akkermans A.D., de Vos W.M. Molecular diversity of Lactobacillus spp. and other lactic acid bacteria in the human intestine as determined by specific amplification of 16S ribosomal DNA. Appl Environ Microbiol. 68:2002;114-123
    • (2002) Appl Environ Microbiol , vol.68 , pp. 114-123
    • Heilig, H.G.1    Zoetendal, E.G.2    Vaughan, E.E.3    Marteau, P.4    Akkermans, A.D.5    De Vos, W.M.6
  • 11
  • 12
    • 0035793372 scopus 로고    scopus 로고
    • Molecular analysis of commensal host-microbial relationships in the intestine
    • Hooper L.V., Wong M.H., Thelin A., Hansson L., Falk P.G., Gordon J.I. Molecular analysis of commensal host-microbial relationships in the intestine. Science. 291:2001;881-884
    • (2001) Science , vol.291 , pp. 881-884
    • Hooper, L.V.1    Wong, M.H.2    Thelin, A.3    Hansson, L.4    Falk, P.G.5    Gordon, J.I.6
  • 13
    • 0036241355 scopus 로고    scopus 로고
    • Changes in predominant bacterial populations in human faeces with age and with Clostridium difficile infection
    • Hopkins M.J., Macfarlane G.T. Changes in predominant bacterial populations in human faeces with age and with Clostridium difficile infection. J Med Microbiol. 51:2002;448-454
    • (2002) J Med Microbiol , vol.51 , pp. 448-454
    • Hopkins, M.J.1    MacFarlane, G.T.2
  • 14
    • 0035124967 scopus 로고    scopus 로고
    • Age and disease related changes in intestinal bacterial populations assessed by cell culture, 16S rRNA abundance, and community cellular fatty acid profiles
    • Hopkins M.J., Sharp R., Macfarlane G.T. Age and disease related changes in intestinal bacterial populations assessed by cell culture, 16S rRNA abundance, and community cellular fatty acid profiles. Gut. 48:2001;198-205
    • (2001) Gut , vol.48 , pp. 198-205
    • Hopkins, M.J.1    Sharp, R.2    MacFarlane, G.T.3
  • 15
    • 0031662188 scopus 로고    scopus 로고
    • Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity
    • Hugenholtz P., Goebel B.M., Pace N.R. Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity. J Bacteriol. 180:1998;4765-4774
    • (1998) J Bacteriol , vol.180 , pp. 4765-4774
    • Hugenholtz, P.1    Goebel, B.M.2    Pace, N.R.3
  • 18
    • 0035985018 scopus 로고    scopus 로고
    • Pandemic of atopic diseases - A lack of microbial exposure in early infancy?
    • Kalliomaki M., Isolauri E. Pandemic of atopic diseases - a lack of microbial exposure in early infancy? Curr Drug Targets Infect Disord. 2:2002;193-199
    • (2002) Curr Drug Targets Infect Disord , vol.2 , pp. 193-199
    • Kalliomaki, M.1    Isolauri, E.2
  • 19
    • 0036741464 scopus 로고    scopus 로고
    • Mucosal and invading bacteria in patients with inflammatory bowel disease compared with controls
    • Kleessen B., Kroesen A.J., Buhr H.J., Blaut M. Mucosal and invading bacteria in patients with inflammatory bowel disease compared with controls. Scand J Gastroenterol. 37:2002;1034-1041
    • (2002) Scand J Gastroenterol , vol.37 , pp. 1034-1041
    • Kleessen, B.1    Kroesen, A.J.2    Buhr, H.J.3    Blaut, M.4
  • 20
    • 0029162158 scopus 로고
    • Quantitative fluorescence in situ hybridization of Bifidobacterium spp. with genus-specific 16S rRNA-targeted probes and its application in fecal samples
    • Langendijk P., Schut F., Jansen G., Raangs G., Kamphuis G., Wilkinson M., Welling G. Quantitative fluorescence in situ hybridization of Bifidobacterium spp. with genus-specific 16S rRNA-targeted probes and its application in fecal samples. Appl Environ Microbiol. 61:1995;3069-3075
    • (1995) Appl Environ Microbiol , vol.61 , pp. 3069-3075
    • Langendijk, P.1    Schut, F.2    Jansen, G.3    Raangs, G.4    Kamphuis, G.5    Wilkinson, M.6    Welling, G.7
  • 22
    • 0034994144 scopus 로고    scopus 로고
    • Pathologic and physiologic interactions of bacteria with the gastrointestinal epithelium
    • Lu L., Walker W.A. Pathologic and physiologic interactions of bacteria with the gastrointestinal epithelium. Am J Clin Nutr. 73:2001;1124S-1130S
    • (2001) Am J Clin Nutr , vol.73
    • Lu, L.1    Walker, W.A.2
  • 23
    • 0034081969 scopus 로고    scopus 로고
    • Quantitative real-time PCR for Porphyromonas gingivalis and total bacteria
    • Lyons S.R., Griffen A.L., Leys E.J. Quantitative real-time PCR for Porphyromonas gingivalis and total bacteria. J Clin Microbiol. 38:2000;2362-2365
    • (2000) J Clin Microbiol , vol.38 , pp. 2362-2365
    • Lyons, S.R.1    Griffen, A.L.2    Leys, E.J.3
  • 24
    • 0030628034 scopus 로고    scopus 로고
    • Human colonic microbiota: Ecology, physiology and metabolic potential of intestinal bacteria
    • Macfarlane G.T., Macfarlane S. Human colonic microbiota ecology, physiology and metabolic potential of intestinal bacteria. Scand J Gastroenterol Suppl. 222:1997;3-9
    • (1997) Scand J Gastroenterol Suppl , vol.222 , pp. 3-9
    • MacFarlane, G.T.1    MacFarlane, S.2
  • 25
    • 0002799090 scopus 로고
    • Metabolic activities of the normal colonic microflora
    • S. Gibson. Frankfurt, Germany: Frankfurt: Springer
    • McFarlene G., Gibson G. Metabolic activities of the normal colonic microflora. Gibson S. Human Health: Contribution of Microorganisms. 1994;17-38 Frankfurt: Springer, Frankfurt, Germany
    • (1994) Human Health: Contribution of Microorganisms , pp. 17-38
    • McFarlene, G.1    Gibson, G.2
  • 26
    • 0036146824 scopus 로고    scopus 로고
    • Determination of bacterial load by real-time PCR using a broad-range (universal) probe and primers set
    • Nadkarni M.A., Martin F.E., Jacques N.A., Hunter N. Determination of bacterial load by real-time PCR using a broad-range (universal) probe and primers set. Microbiology. 148:2002;257-266
    • (2002) Microbiology , vol.148 , pp. 257-266
    • Nadkarni, M.A.1    Martin, F.E.2    Jacques, N.A.3    Hunter, N.4
  • 27
    • 2342442430 scopus 로고    scopus 로고
    • Reduction in diversity of the colonic mucosa associated bacterial microflora in patients with active inflammatory bowel disease
    • Ott S.J., Musfeldt M., Wenderoth D.F., Hampe J., Brant O., Fölsch U.R., Timmis K.N., Schreiber S. Reduction in diversity of the colonic mucosa associated bacterial microflora in patients with active inflammatory bowel disease. Gut. 53:2004;685-693
    • (2004) Gut , vol.53 , pp. 685-693
    • Ott, S.J.1    Musfeldt, M.2    Wenderoth, D.F.3    Hampe, J.4    Brant, O.5    Fölsch, U.R.6    Timmis, K.N.7    Schreiber, S.8
  • 28
    • 2942624056 scopus 로고    scopus 로고
    • Quantification of intestinal bacterial populations by real-time PCR using a universal primer set and MGB probes: A global approach to the enteric flora
    • Ott S.J., Musfeldt M., Ullmann U., Hampe J., Schreiber S. Quantification of intestinal bacterial populations by real-time PCR using a universal primer set and MGB probes: a global approach to the enteric flora. J Clin Microbiol. 42:2004;2566-2572
    • (2004) J Clin Microbiol , vol.42 , pp. 2566-2572
    • Ott, S.J.1    Musfeldt, M.2    Ullmann, U.3    Hampe, J.4    Schreiber, S.5
  • 31
    • 0035988488 scopus 로고    scopus 로고
    • The development of gut immune responses and gut microbiota: Effects of probiotics in prevention and treatment of allergic disease
    • Rautava S., Isolauri E. The development of gut immune responses and gut microbiota effects of probiotics in prevention and treatment of allergic disease. Curr Issues Intest Microbiol. 3:2002;15-22
    • (2002) Curr Issues Intest Microbiol , vol.3 , pp. 15-22
    • Rautava, S.1    Isolauri, E.2
  • 32
    • 0036088839 scopus 로고    scopus 로고
    • Human studies with probiotics and prebiotics: Clinical implications
    • Saavedra J.M., Tschernia A. Human studies with probiotics and prebiotics clinical implications. Br J Nutr. 87:2002;S241-246
    • (2002) Br J Nutr , vol.87 , pp. 241-246
    • Saavedra, J.M.1    Tschernia, A.2
  • 33
    • 0031764376 scopus 로고    scopus 로고
    • A new approach to utilize PCR-single-strand-conformation polymorphism for 16S rRNA gene-based microbial community analysis
    • Schwieger F., Tebbe C.C. A new approach to utilize PCR-single-strand- conformation polymorphism for 16S rRNA gene-based microbial community analysis. Appl Environ Microbiol. 64:1998;4870-4876
    • (1998) Appl Environ Microbiol , vol.64 , pp. 4870-4876
    • Schwieger, F.1    Tebbe, C.C.2
  • 34
    • 0037302961 scopus 로고    scopus 로고
    • Alterations of the dominant faecal bacterial groups in patients with Crohn's disease of the colon
    • Seksik P., Rigottier-Gois L., Gramet G., Sutren M., Pochart P., Marteau P., Jian R., Dore J. Alterations of the dominant faecal bacterial groups in patients with Crohn's disease of the colon. Gut. 52:2003;237-242
    • (2003) Gut , vol.52 , pp. 237-242
    • Seksik, P.1    Rigottier-Gois, L.2    Gramet, G.3    Sutren, M.4    Pochart, P.5    Marteau, P.6    Jian, R.7    Dore, J.8
  • 35
    • 0034021775 scopus 로고    scopus 로고
    • Rapid identification of Yersinia enterocolitica in blood by the 5′ nuclease PCR assay
    • Sen K. Rapid identification of Yersinia enterocolitica in blood by the 5′ nuclease PCR assay. J Clin Microbiol. 38:2000;1953-1958
    • (2000) J Clin Microbiol , vol.38 , pp. 1953-1958
    • Sen, K.1
  • 36
    • 0033771013 scopus 로고    scopus 로고
    • Chemostat enrichments of human feces with resistant starch are selective for adherent butyrate-producing clostridia at high dilution rates
    • Sharp R., Macfarlane G.T. Chemostat enrichments of human feces with resistant starch are selective for adherent butyrate-producing clostridia at high dilution rates. Appl Environ Microbiol. 66:2000;4212-4221
    • (2000) Appl Environ Microbiol , vol.66 , pp. 4212-4221
    • Sharp, R.1    MacFarlane, G.T.2
  • 37
    • 0021328175 scopus 로고
    • Intestinal flora in health and disease
    • Simon G.L., Gorbach S.L. Intestinal flora in health and disease. Gastroenterology. 86:1984;174-193
    • (1984) Gastroenterology , vol.86 , pp. 174-193
    • Simon, G.L.1    Gorbach, S.L.2
  • 38
    • 0033754245 scopus 로고    scopus 로고
    • Denaturing gradient gel electrophoresis analysis of 16S ribosomal DNA amplicons to monitor changes in fecal bacterial populations of weaning pigs after introduction of Lactobacillus reuteri strain MM53
    • Simpson J.M., McCracken V.J., Gaskins H.R., Mackie R.I. Denaturing gradient gel electrophoresis analysis of 16S ribosomal DNA amplicons to monitor changes in fecal bacterial populations of weaning pigs after introduction of Lactobacillus reuteri strain MM53. Appl Environ Microbiol. 66:2000;4705-4714
    • (2000) Appl Environ Microbiol , vol.66 , pp. 4705-4714
    • Simpson, J.M.1    McCracken, V.J.2    Gaskins, H.R.3    MacKie, R.I.4
  • 39
    • 0032755259 scopus 로고    scopus 로고
    • Direct analysis of genes encoding 16S rRNA from complex communities reveals many novel molecular species within the human gut
    • Suau A., Bonnet R., Sutren M., Godon J., Gibson G., Collins M., Dore J. Direct analysis of genes encoding 16S rRNA from complex communities reveals many novel molecular species within the human gut. Appl Environ Microbiol. 65:1999;4799-4807
    • (1999) Appl Environ Microbiol , vol.65 , pp. 4799-4807
    • Suau, A.1    Bonnet, R.2    Sutren, M.3    Godon, J.4    Gibson, G.5    Collins, M.6    Dore, J.7
  • 41
    • 0034129592 scopus 로고    scopus 로고
    • Analysis of the fecal microflora of human subjects consuming a probiotic product containing Lactobacillus rhamnosus DR20
    • Tannock G.W., Munro K., Harmsen H.J., Welling G.W., Smart J., Gopal P.K. Analysis of the fecal microflora of human subjects consuming a probiotic product containing Lactobacillus rhamnosus DR20. Appl Environ Microbiol. 66:2000;2578-2588
    • (2000) Appl Environ Microbiol , vol.66 , pp. 2578-2588
    • Tannock, G.W.1    Munro, K.2    Harmsen, H.J.3    Welling, G.W.4    Smart, J.5    Gopal, P.K.6
  • 43
    • 0036213109 scopus 로고    scopus 로고
    • Lactobacillus therapy for acute infectious diarrhea in children: A meta-analysis
    • Van Niel C.W., Feudtner C., Garrison M.M., Christakis D.A. Lactobacillus therapy for acute infectious diarrhea in children: a meta-analysis. Pediatrics. 109:2002;678-684
    • (2002) Pediatrics , vol.109 , pp. 678-684
    • Van Niel, C.W.1    Feudtner, C.2    Garrison, M.M.3    Christakis, D.A.4
  • 44
    • 0032815979 scopus 로고    scopus 로고
    • Impact on the composition of the faecal flora by a new probiotic preparation: Preliminary data on maintenance treatment of patients with ulcerative colitis
    • Venturi A., Gionchetti P., Rizzello F., Johansson R., Zucconi E., Brigidi P., Matteuzzi D., Campieri M. Impact on the composition of the faecal flora by a new probiotic preparation preliminary data on maintenance treatment of patients with ulcerative colitis. Aliment Pharmacol Ther. 13:1999;1103-1108
    • (1999) Aliment Pharmacol Ther , vol.13 , pp. 1103-1108
    • Venturi, A.1    Gionchetti, P.2    Rizzello, F.3    Johansson, R.4    Zucconi, E.5    Brigidi, P.6    Matteuzzi, D.7    Campieri, M.8
  • 45
    • 0033065357 scopus 로고    scopus 로고
    • Correlation between structural diversity and catabolic versatility of metal-affected prototrophic bacteria in soil
    • Wenderoth D.F., Reber H.H. Correlation between structural diversity and catabolic versatility of metal-affected prototrophic bacteria in soil. Soil Biol Biochem. 31:1999;345-352
    • (1999) Soil Biol Biochem , vol.31 , pp. 345-352
    • Wenderoth, D.F.1    Reber, H.H.2
  • 46
    • 0029900986 scopus 로고    scopus 로고
    • Human colonic biota studied by ribosomal DNA sequence analysis
    • Wilson K., Blitchington R. Human colonic biota studied by ribosomal DNA sequence analysis. Appl Environ Microbiol. 62:1996;2273-2278
    • (1996) Appl Environ Microbiol , vol.62 , pp. 2273-2278
    • Wilson, K.1    Blitchington, R.2
  • 47
    • 0345195995 scopus 로고    scopus 로고
    • Determination of microbial diversity in environmental samples: Pitfalls of PCR-based rRNA analysis
    • Wintzingerode F., Göbel U.B., Stackebrandt E. Determination of microbial diversity in environmental samples pitfalls of PCR-based rRNA analysis. FEMS Microbiology Reviews. 21:1997;213-229
    • (1997) FEMS Microbiology Reviews , vol.21 , pp. 213-229
    • Wintzingerode, F.1    Göbel, U.B.2    Stackebrandt, E.3
  • 48
    • 0029859948 scopus 로고    scopus 로고
    • Characterization of universal small-subunit rRNA hybridization probes for quantitative molecular microbial ecology studies
    • Zheng D., Alm E., Stahl D., Raskin L. Characterization of universal small-subunit rRNA hybridization probes for quantitative molecular microbial ecology studies. Appl Environ Microbiol. 62:1996;4504-4513
    • (1996) Appl Environ Microbiol , vol.62 , pp. 4504-4513
    • Zheng, D.1    Alm, E.2    Stahl, D.3    Raskin, L.4
  • 49
    • 0031684010 scopus 로고    scopus 로고
    • Temperature gradient gel electrophoresis analysis of 16S rRNA from human fecal samples reveals stable and host-specific communities of active bacteria
    • Zoetendal E.G., Akkermans A.D.L., De Vos W.M. Temperature gradient gel electrophoresis analysis of 16S rRNA from human fecal samples reveals stable and host-specific communities of active bacteria. Appl Environ Microbiol. 64:1998;3854-3859
    • (1998) Appl Environ Microbiol , vol.64 , pp. 3854-3859
    • Zoetendal, E.G.1    Akkermans, A.D.L.2    De Vos, W.M.3
  • 50
    • 0036300743 scopus 로고    scopus 로고
    • Mucosa-associated bacteria in the human gastrointestinal tract are uniformly distributed along the colon and differ from the community recovered from feces
    • Zoetendal E.G., von Wright A., Vilpponen-Salmela T., Ben-Amor K., Akkermans A.D., De Vos W.M. Mucosa-associated bacteria in the human gastrointestinal tract are uniformly distributed along the colon and differ from the community recovered from feces. Appl Environ Microbiol. 68:2002;3401-3407
    • (2002) Appl Environ Microbiol , vol.68 , pp. 3401-3407
    • Zoetendal, E.G.1    Von Wright, A.2    Vilpponen-Salmela, T.3    Ben-Amor, K.4    Akkermans, A.D.5    De Vos, W.M.6


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