Population genetics and phylogeography of endangered Oxytropis campestris var. chartacea and relatives: Arctic-alpine disjuncts in eastern North America

Molecular Ecology

Volumn 13, Issue 12, 2004, Pages 3657-3673

  Chung, Melissa ^a   Gelembiuk, Greg ^a   Givnish, Thomas J ^a,b  

^a UNIVERSITY OF WISCONSIN MADISON   (United States)

^b 130 Birge Hall ^*  (United States)

Author keywords

AFLPs; Arctic alpine plant; Conservation; Genetic variation; Oxytropis campestris; Population genetics

Indexed keywords

ANALYSIS OF VARIANCE; ARTICLE; CLUSTER ANALYSIS; COMPARATIVE STUDY; ENVIRONMENTAL PROTECTION; GENETIC VARIABILITY; GENETICS; GEOGRAPHY; HISTOLOGY; MORPHOMETRICS; NORTH AMERICA; NUCLEIC ACID AMPLIFICATION; OXYTROPIS; PHYLOGENY; PLANT CHROMOSOME; POPULATION GENETICS; RESTRICTION FRAGMENT LENGTH POLYMORPHISM;

ANALYSIS OF VARIANCE; BODY WEIGHTS AND MEASURES; CHROMOSOMES, PLANT; CLUSTER ANALYSIS; CONSERVATION OF NATURAL RESOURCES; GENETICS, POPULATION; GEOGRAPHY; NORTH AMERICA; NUCLEIC ACID AMPLIFICATION TECHNIQUES; OXYTROPIS; PHYLOGENY; POLYMORPHISM, RESTRICTION FRAGMENT LENGTH; VARIATION (GENETICS);

EMBRYOPHYTA; FABACEAE; OXYTROPIS; OXYTROPIS CAMPESTRIS;

EID: 9644258999     PISSN: 09621083     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1365-294X.2004.02360.x     Document Type: Article

References (75)

1. Abbott RJ, Brochmann C (2003) History and evolution of the arctic flora: in the footsteps of Eric Hultén. Molecular Ecology, 12, 299-313.
2. Barneby RC (1952) A revision of the North American species of Oxytropis DC. Proceedings of the California Academy of Sciences, 27, 177-312.
3. Bauer PJ (1983) Bumblebee pollination relationships on the Beartooth Plateau tundra of southern Montana. American Journal of Botany, 70, 134-144.
4. Birks HJB (1976) Late-Wisconsinan vegetational history at Wolf Creek, Central Minnesota. Ecological Monographs, 46, 395-429.
5. Borowsky RL (2001) Estimating nucleotide diversity from random amplified polymorphic DNA and amplified fragment length polymorphism data. Molecular Phylogenetics and Evolution, 18, 143-148.
6. Bussell JD (1999) The distribution of random amplified polymorphic DNA (RAPD) diversity amongst populations of Isotoma petraea (Lobeliaceae). Molecular Ecology, 8, 775-789.
7. Cavalli-Sforza LL, Edwards AWF (1967) Phylogenetic analysis: models and estimation procedures. American Journal of Human Genetics, 19, 233-257.
8. Ciofi C, Beaumont MA, Swingland IR, Bruford MW (1999) Genetic divergence and units for conservation in the Komodo dragon Varanus komodoensis. Proceedings of the Royal Society: Biology Sciences, 266, 2269-2273.
9. Clayton L, Attig JW, Mickelson DM (2001) Effects of late Pleistocene permafrost on the landscape of Wisconsin, USA. Boreas, 30, 173-188.
10. Davis JI, Manos PS (1991) Isozyme variation and species delimitation in the Puccinellia nuttalliana complex (Poaceae): an application of the phylogenetic species concept. Systematic Botany, 16, 431-445.
11. Davis JI, Nixon KC (1992) Populations, genetic variation, and the delimitation of phylogenetic species. Systematic Biology, 41, 421-435.
12. Dawe JC, Murray DF (1981) Chromosome numbers of selected Alaskan vascular plants. Canadian Journal of Botany, 59, 1373-1381.
13. Doyle JJ, Doyle JL (1988) Isolation of plant DNA from fresh tissue. Focus, 12, 13-15.
14. Elisens WJ, Packer JG (1980) A contribution to the taxonomy of the Oxytropis campestris complex in northwestern North America. Canadian Journal of Botany, 58, 1820-1831.
15. Ellstrand NC, Elam DR (1993) Population genetic consequences of small population size: implications for plant conservation. Annual Review of Ecology and Systematics, 24, 217-242.
16. Fassett NC (1936) Notes from the Herbarium of the University of Wisconsin - XIII. Rhodora, 38, 94-97.
17. Felsenstein J (1981) Evolutionary trees from gene frequencies and quantitative characters: finding maximum likelihood estimates. Evolution, 35, 1229-1242.
18. Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution, 39, 783-791.
19. Fitch WM, Margoliash E (1967) Construction of phylogenetic trees. Science, 155, 279-284.
20. Frankel OH, Brown AHD, Burdon JJ (1995) The Conservation of Plant Biodiversity. Cambridge University Press, Cambridge.
21. Gabrielsen TM, Bachmann K, Jakobsen KS, Brochmann C (1997) Glacial survival does not matter: RAPD phylogeography of Nordic Saxifraga oppositifolia. Molecular Ecology, 6, 831-842.
22. Gaudeul M, Taberlet P, Till-Bottraud I (2000) Genetic diversity in an endangered alpine plant Eryngium alpinum L. (Apiaceae), inferred from amplified fragment length polymorphism markers. Molecular Ecology, 9, 1625-1637.
23. Gervais C, Blondeau M (1999) Notes de cytotaxonomie sur quelques Oxytropis (Fabaceae) du nord-est du Canada. Bulletin de la Société Neuchâteloise Des Sciences Naturelles, 122, 45-63.
24. Givnish TJ (1982) On the adaptive significance of leaf height in forest herbs. American Naturalist, 120, 353-381.
25. Givnish TJ (1995) Plant stems: biomechanical adaptation for energy capture and influence on species distributions. In: Plant Stems: Physiology and Functional Morphology (ed. Gartner BL), pp. 3-49. Chapman & Hall, New York.
26. Hamrick JL, Godt MJW (1989) Allozyme diversity in plant species. In: Plant Populations Genetics, Breeding, and Genetic Resources (eds Brown AHD, Clegg MT, Kahler AL, Weir BS), pp. 43-63. Sinauer, Sunderland, MA.
27. Heun M, Schafer-Pregl R, Klawan D et al. (1997) Site of einkorn wheat domestication identified by DNA finger printing. Science, 278, 1312-1314.
28. Holsinger KE, Lewis PO, Dey DK (2002) A Bayesian approach to inferring population structure from dominant markers. Molecular Ecology, 11, 1157-1164.
29. Innan H, Terauchi R, Kahl G, Tajima F (1999) A method for estimating nucleotide diversity from AFLP data. Genetics, 151, 1157-1164.
30. Isely D (1998) Native and Naturalized Leguminosae (Fabaceae) of the United States. Monte L. Bean Life. Science Museum, Brigham Young University, Prove UT.
31. Jones CJ, Edwards KJ, Castaglione S et al. (1997) Reproducibility testing of RAPD, AFLP and SSR markers in plants by a network of European laboratories. Molecular Breeding, 3, 381-390.
32. Jorgensen JL, Stehlik I, Brochmann C, Conti E (2003) Implications of ITS sequences and RAPD markers for the taxonomy and biogeography of the Oxytropis campestris and O. arctica (Fabaceae) complexes in Alaska. American Journal of Botany, 90, 1470-1480.
33. Karp A, Seburg O, Buiatti M (1996) Molecular techniques in the assessment of botanical diversity. Annals of Botany, 78, 143-149.
34. Ledingham GF (1960) Chromosome numbers in Astragalus and Oxytropis. Canadian Journal of Genetics ana Cytology, 2, 119-128.
35. Leonard AC, Franson SE, Hertzberg VS et al. (1999) Hypothesis testing with the similarity index. Molecular Ecology, 8, 2105-2114.
36. Loveless MD, Hamrick JL (1984) Ecological determinants of genetic structure in plant populations. Annual Review of Ecology and Systematics, 15, 65-95.
37. Lynch M (1990) The similarity index and DNA fingerprinting. Molecular Biology and Evolution, 7, 478-484.
38. Lynch M, Milligan BG (1994) Analysis of population genetic structure with RAPD markers. Molecular Ecology, 3, 91-99.
39. Mantel NA (1967) The detection of disease clustering and a generalized regression approach. Cancer Research, 27, 209-220.
40. McGregor CE, Lambert CA, Greyling MM, Louw JH, Warnick L (2000) A comparative assessment of DNA fingerprinting techniques (RAPD, ISSR, AFLP, and SSR) in tetraploid potato (Solamm tuberosum L.) germplasm. Euphytica, 113, 135-144.
41. Mechanda SM, Baum BR, Johnson DA, Arnason JT (2004) Sequence assessment of comigrating AFLP™ bands in Echinacea - implications for comparative biological studies. Genome, 47, 15-25.
42. Miyashita NT, Kawabe A, Innan H (1999) DNA variation in the wild plant Arabidopsis thaliana revealed by amplified fragment length polymorphism analysis. Genetics, 152, 1723-1731.
43. Moss EH (1983) Flora of Alberta, 2nd edn University of Toronto Press, Toronto Canada.
44. 2 Automated Sequencers. Forest Biotechnology Group, Department of Forestry, NCSU.
45. Nei M (1972) Genetic distance between populations. American Naturalist, 106, 283-292.
46. Nei M, Li WH (1979) Mathematical model for studying genetic variation in terms of restriction endonucleases. Proceedings of the National Academy Science, USA 76, 5269-5273.
47. Palacios C, Kresovich S, Gonzalez-Candelas F (1999) A population genetic study of the endangered plant species Limonium dufourii (Plumbaginaceae) based on amplified fragment length polymorphism (AFLP). Molecular Ecology, 8, 645-657.
48. Pewe TL (1983) The periglacial environment in North America during Wisconsin time. In: Late-Quaternary Environments of the United States (eds Wright HE Jr, Porter SC), Vol. 1. University of Minnesota Press, Minneapolis.
49. Richard PJG (1974) Présence de Shepherdia canadensis (L.) Nutt. dans la région du parc des Laurentides, Québec, au tardiglaciaire. Naturaliste Canadien, 101, 763-768.
50. Richard PJG (1989) Patterns of post-Wisconsinan plant colonization in Quebec-Labrador. In: Geology of North America Vol. K-1: Quaternary Geology of Canada and Greenland (ed. Fulton RJ), Minister of Supply and Services, Canada.
51. Rousset F (1997) Genetic differentiation and estimation of gene flow from F-statistics under isolation by distance. Genetics, 145, 1219-1228.
52. Russell JR, Weber JC, Booth A et al. (1999) Genetic variation of Calycophyllum spruceanum in the Peruvian Amazon Basin, revealed by amplified fragment length polymorphism (AFLP) analysis. Molecular Ecology, 8, 199-204.
53. Saitou N, Nei M (1987) The neighbour-joining method: a new method for reconstructing phylogenetic trees. Molecular Biology and Evolution, 4, 406-425.
54. Schneider S, Roessli D, Excoffier L (2000) ARLEQUIN Version 2000: a Software for Population Genetics Analysis. Genetics and Biometry Laboratory, University of Geneva, Switzerland.
55. Schönswetter P, Tribsch A, Niklfeld H (2004) AFLP reveals no genetic divergence of the Eastern Alpine endemic Oxytropis campestris subsp. tiroliensis (Fabaceae) from widespread subsp. campestris. Plant Systematics and Evolution, 244, 245-255.
56. Scoggan HJ (1957) Flora of Manitoba. Bulletin no. 140, Biological Series no. 47. National Museum of Canada, Ottawa.
57. Sneath PHA, Sokal RR (1973) Numerical Taxonomy. W.H. Freeman, San Francisco.
58. Snow R (1963) Alcoholic hydrochloric acid-carmine as a stain for chromosomes in squash preparations. Stain Technology, 38, 9-13.
59. Soltis PS, Soltis DE (2000) The role of genetic and genomic attributes in the success of polyploids. Proceedings of the National Academy of Sciences USA, 12, 243-273.
60. Stebbins GL (1984) Polyploidy and the distribution of the arctic-alpine flora: new evidence and a new approach. Botanica Helvetica, 94, 1-13.
61. Swofford DL (1993) PAUP*: Phylogenetic Analysis Using Parsimony, Version 4.0b4a for Macintosh.
62. Takezaki N, Nei M (1996) Genetic distances and reconstruction of phylogenetic trees from microsatellite DNA. Genetics, 144, 389-399.
63. Templeton AR, Levin DA (1979) Evolutionary consequences of seed pools. American Naturalist, 114, 232-249.
64. Travis SE, Maschinski J, Keim P (1996) An analysis of genetic variation in Astragalus cremnophylax var. cremnophylax, a critically endangered plant, using AFLP markers. Molecular Ecology, 5, 735-745.
65. US Fish and Wildlife Service (1991) Fassett's Locoweed Recovery Plan. Twin Cities, MNO.
66. Vekemans X, Beauwens T, Lemaire M, Rolden-Ruiz I (2002) Data from amplified fragment length polymorphism (AFLP) markers show indication of size homoplasy and of a relationship between degree of homoplasy and fragment size. Molecular Ecology, 11, 139-151.
67. Vijverberg K, Kuperus P, Breeuwer JAJ, Bachmann K (2000) Incipient adaptive radiation of New Zealand and Australian Microseris (Asteraceae): an amplified fragment length polymorphism (AFLP) study. Journal of Evolutionary Biology, 13, 997-1008.
68. Vogler AP, DeSalle R (1994) Diagnosing units of conservation management. Conservation Biology, 8, 354-363.
69. Vos P, Hogers R, Bleeker M et al. (1995) AFLP: a new technique for DNA fingerprinting. Nucleic Acids Research, 23, 4407-4414.
70. Welsh SL (1991) Oxytropis DC. - names, basionyms, types, and synonyms - Flora North America Project. Great Basin Naturalist, 51, 377-396.
71. Welsh SL (1995) North American types of Oxytropis DC. (Leguminosae) at the natural history museum and Royal Botanic Garden, England, with nomenclatural comments and a new variety. Great Basin Naturalist, 55, 271-281.
72. Welsh SL (2001) Revision of North American Species of Oxytropis de Candolle (Leguminosae). EPS Inc., Orem, Utah.
73. Wright S (1951) The genetical structure of populations. Annals of Eugenics, 15, 323-254.
74. Wright S (1969) Evolution and the Genetics of Populations, Vol. 2: The Theory of Gene Frequencies. University of Chicago Press, Chicago.
75. Zhivotovsky LA (1999) Estimating population structure in diploids with multilocus dominant DNA markers. Molecular Ecology, 8, 907-913.