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Volumn 28, Issue 5-6, 2004, Pages 393-399

An unusual 500,000 bases long oscillation of guanine and cytosine content in human chromosome 21

Author keywords

Cytosine; Guanine; Human chromosome 21

Indexed keywords

APPROXIMATION THEORY; CYTOLOGY; DNA; DNA SEQUENCES; ENCODING (SYMBOLS); GENES; PROTEINS; SPECTRUM ANALYSIS;

EID: 9544230697     PISSN: 14769271     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.compbiolchem.2004.09.011     Document Type: Article
Times cited : (6)

References (47)
  • 1
    • 0028064998 scopus 로고
    • An autosomal locus causing autoimmune disease, autoimmune polyglandular disease type I assigned to chromosome 21
    • Aaltonen, J., Björses, P., Sandkuijl, L., Perheentupa, J., Peltonen, L., 1994. An autosomal locus causing autoimmune disease, autoimmune polyglandular disease type I assigned to chromosome 21. Nat. Genet. 8, 83-87.
    • (1994) Nat. Genet. , vol.8 , pp. 83-87
    • Aaltonen, J.1    Björses, P.2    Sandkuijl, L.3    Perheentupa, J.4    Peltonen, L.5
  • 2
    • 0000389545 scopus 로고    scopus 로고
    • An autoimmune disease, APECED, caused by mutations in novel gene featuring two PHD-type zinc-finger domains
    • The Finnish-German APECED consortium
    • Aaltonen, J., et al., The Finnish-German APECED consortium, 1997. An autoimmune disease, APECED, caused by mutations in novel gene featuring two PHD-type zinc-finger domains. Nat. Genet. 17, 339-403.
    • (1997) Nat. Genet. , vol.17 , pp. 339-403
    • Aaltonen, J.1
  • 3
    • 0023664981 scopus 로고
    • Periodicities in introns
    • Arques, D.G., 1987. Periodicities in introns. Nucleic Acids Res. 15, 7581-7592.
    • (1987) Nucleic Acids Res. , vol.15 , pp. 7581-7592
    • Arques, D.G.1
  • 4
    • 0030575777 scopus 로고    scopus 로고
    • Naturally occurring nucleosome positioning signals in human exons and introns
    • Baldi, P., Brunak, S., Chauvin, Y., Krogh, A., 1996. Naturally occurring nucleosome positioning signals in human exons and introns. J. Mol. Biol. 263, 503-510.
    • (1996) J. Mol. Biol. , vol.263 , pp. 503-510
    • Baldi, P.1    Brunak, S.2    Chauvin, Y.3    Krogh, A.4
  • 5
    • 0035802410 scopus 로고    scopus 로고
    • Misunderstandings about isochors. Part 1
    • Bernards, G., 2001. Misunderstandings about isochors. Part 1. Gene 276, 3-13.
    • (2001) Gene , vol.276 , pp. 3-13
    • Bernards, G.1
  • 7
    • 0000241874 scopus 로고
    • GeneMark, parallel gene recognition for both DNA strands
    • Borodovsky, M., McIninch, J., 1993. GeneMark, parallel gene recognition for both DNA strands. Comput. Chem. 17, 123-133. Borodovsky, M., Sprizhitskii, Yu., Golovanov, E., Aleksandrov, A., 1986a. Statistical patterns in primary structures of functional regions in the E. coli genome. I. Oligonucleotide frequencies analysis. Mol. Biol. 20, 826-833; Borodovsky, M., Sprizhitskii, Yu., Golovanov, E., Aleksandrov, A., 1986b. Statistical patterns in primary structures of functional regions in the E. coli genome. II. Non-homogeneous Markov models. Mol. Biol. 20, 833-840; Borodovsky, M., Sprizhitskii, Yu., Golovanov, E., Aleksandrov, A., 1986c. Statistical patterns in primary structures of functional regions in the E. coli genome. III. Computer recognition of coding regions. Mol. Biol. 20, 1145-1150.
    • (1993) Comput. Chem. , vol.17 , pp. 123-133
    • Borodovsky, M.1    McIninch, J.2
  • 8
    • 0002916795 scopus 로고
    • Statistical patterns in primary structures of functional regions in the E. coli genome. I. Oligonucleotide frequencies analysis
    • Borodovsky, M., McIninch, J., 1993. GeneMark, parallel gene recognition for both DNA strands. Comput. Chem. 17, 123-133. Borodovsky, M., Sprizhitskii, Yu., Golovanov, E., Aleksandrov, A., 1986a. Statistical patterns in primary structures of functional regions in the E. coli genome. I. Oligonucleotide frequencies analysis. Mol. Biol. 20, 826-833; Borodovsky, M., Sprizhitskii, Yu., Golovanov, E., Aleksandrov, A., 1986b. Statistical patterns in primary structures of functional regions in the E. coli genome. II. Non-homogeneous Markov models. Mol. Biol. 20, 833-840; Borodovsky, M., Sprizhitskii, Yu., Golovanov, E., Aleksandrov, A., 1986c. Statistical patterns in primary structures of functional regions in the E. coli genome. III. Computer recognition of coding regions. Mol. Biol. 20, 1145-1150.
    • (1986) Mol. Biol. , vol.20 , pp. 826-833
    • Borodovsky, M.1    Sprizhitskii, Yu.2    Golovanov, E.3    Aleksandrov, A.4
  • 9
    • 0002918043 scopus 로고
    • Statistical patterns in primary structures of functional regions in the E. coli genome. II. Non-homogeneous Markov models
    • Borodovsky, M., McIninch, J., 1993. GeneMark, parallel gene recognition for both DNA strands. Comput. Chem. 17, 123-133. Borodovsky, M., Sprizhitskii, Yu., Golovanov, E., Aleksandrov, A., 1986a. Statistical patterns in primary structures of functional regions in the E. coli genome. I. Oligonucleotide frequencies analysis. Mol. Biol. 20, 826-833; Borodovsky, M., Sprizhitskii, Yu., Golovanov, E., Aleksandrov, A., 1986b. Statistical patterns in primary structures of functional regions in the E. coli genome. II. Non-homogeneous Markov models. Mol. Biol. 20, 833-840; Borodovsky, M., Sprizhitskii, Yu., Golovanov, E., Aleksandrov, A., 1986c. Statistical patterns in primary structures of functional regions in the E. coli genome. III. Computer recognition of coding regions. Mol. Biol. 20, 1145-1150.
    • (1986) Mol. Biol. , vol.20 , pp. 833-840
    • Borodovsky, M.1    Sprizhitskii, Yu.2    Golovanov, E.3    Aleksandrov, A.4
  • 10
    • 0001695936 scopus 로고
    • Statistical patterns in primary structures of functional regions in the E. coli genome. III. Computer recognition of coding regions
    • Borodovsky, M., McIninch, J., 1993. GeneMark, parallel gene recognition for both DNA strands. Comput. Chem. 17, 123-133. Borodovsky, M., Sprizhitskii, Yu., Golovanov, E., Aleksandrov, A., 1986a. Statistical patterns in primary structures of functional regions in the E. coli genome. I. Oligonucleotide frequencies analysis. Mol. Biol. 20, 826-833; Borodovsky, M., Sprizhitskii, Yu., Golovanov, E., Aleksandrov, A., 1986b. Statistical patterns in primary structures of functional regions in the E. coli genome. II. Non-homogeneous Markov models. Mol. Biol. 20, 833-840; Borodovsky, M., Sprizhitskii, Yu., Golovanov, E., Aleksandrov, A., 1986c. Statistical patterns in primary structures of functional regions in the E. coli genome. III. Computer recognition of coding regions. Mol. Biol. 20, 1145-1150.
    • (1986) Mol. Biol. , vol.20 , pp. 1145-1150
    • Borodovsky, M.1    Sprizhitskii, Yu.2    Golovanov, E.3    Aleksandrov, A.4
  • 11
    • 0031586003 scopus 로고    scopus 로고
    • Prediction of complete gene structures in human genomic DNA
    • Burge, C., Karlin, S., 1997. Prediction of complete gene structures in human genomic DNA. J. Mol. Biol. 268, 78-94.
    • (1997) J. Mol. Biol. , vol.268 , pp. 78-94
    • Burge, C.1    Karlin, S.2
  • 12
    • 0035802425 scopus 로고    scopus 로고
    • Standard deviations and correlations of GC levels in DNA sequences
    • Clay, O., 2001. Standard deviations and correlations of GC levels in DNA sequences. Gene 276, 33-38.
    • (2001) Gene , vol.276 , pp. 33-38
    • Clay, O.1
  • 13
    • 0035802430 scopus 로고    scopus 로고
    • Compositional heterogeneity within and among isochores in mammalian genomes
    • Clay, O., Carels, N., Douady, C., Macaya, G., Bernardi, G., 2001. Compositional heterogeneity within and among isochores in mammalian genomes. Gene 276, 15-24.
    • (2001) Gene , vol.276 , pp. 15-24
    • Clay, O.1    Carels, N.2    Douady, C.3    Macaya, G.4    Bernardi, G.5
  • 14
    • 0041357134 scopus 로고    scopus 로고
    • Using analytical ultracentrifugation to study compositional variation in vertebrate genomes
    • Clay, O., Douady, C.J., Carels, N., Hughes, S., Bucciarelli, G., Bernardi, G., 2003. Using analytical ultracentrifugation to study compositional variation in vertebrate genomes. Eur. Biophys. J. 32, 418-426.
    • (2003) Eur. Biophys. J. , vol.32 , pp. 418-426
    • Clay, O.1    Douady, C.J.2    Carels, N.3    Hughes, S.4    Bucciarelli, G.5    Bernardi, G.6
  • 15
    • 0020480512 scopus 로고
    • Recognition of protein coding regions in DNA sequence
    • Fickett, J. W., 1982. Recognition of protein coding regions in DNA sequence. Nucleic Acids Res. 10, 5303-5318.
    • (1982) Nucleic Acids Res. , vol.10 , pp. 5303-5318
    • Fickett, J.W.1
  • 16
    • 0037202373 scopus 로고    scopus 로고
    • Periodicity in prokaryotic and eukaryotic genomes identified by power spectrum analysis
    • Fukushima, A., Ikemura, T., Kinouchi, M., Oshima, T., Kudo, Y., Mori, H., Kanaya, S., 2002. Periodicity in prokaryotic and eukaryotic genomes identified by power spectrum analysis. Gene 300, 203-211.
    • (2002) Gene , vol.300 , pp. 203-211
    • Fukushima, A.1    Ikemura, T.2    Kinouchi, M.3    Oshima, T.4    Kudo, Y.5    Mori, H.6    Kanaya, S.7
  • 17
    • 0141430082 scopus 로고    scopus 로고
    • The 200-kb segmental duplication on human chromosome 21 originates from a pericentromeric dissemination involving human chromosomes 2, 18 and 13
    • Golfier, G., Chibon, F., Aurias, A., Chen, X.N., Korenberg, J., Rossier, J., Potier, M.C., 2003. The 200-kb segmental duplication on human chromosome 21 originates from a pericentromeric dissemination involving human chromosomes 2, 18 and 13. Gene 312, 51-59.
    • (2003) Gene , vol.312 , pp. 51-59
    • Golfier, G.1    Chibon, F.2    Aurias, A.3    Chen, X.N.4    Korenberg, J.5    Rossier, J.6    Potier, M.C.7
  • 18
    • 0034180314 scopus 로고    scopus 로고
    • Species independence of mutual information in coding and noncoding DNA
    • Grosse, I., Herzel, H., Buldyrev, S.V., Stanley, H.E., 2000. Species independence of mutual information in coding and noncoding DNA. Phys. Rev. 61, 5624-5629.
    • (2000) Phys. Rev. , vol.61 , pp. 5624-5629
    • Grosse, I.1    Herzel, H.2    Buldyrev, S.V.3    Stanley, H.E.4
  • 19
    • 0002345468 scopus 로고    scopus 로고
    • DNA composition, codon usage and exon prediction
    • Bishop, M. (Ed.), Academic Press
    • Guigo, R., 1999. DNA composition, codon usage and exon prediction. In: Bishop, M. (Ed.), Genetics Databases. Academic Press.
    • (1999) Genetics Databases
    • Guigo, R.1
  • 20
    • 0034682403 scopus 로고    scopus 로고
    • The DNA sequence of human chromosome 21
    • Hattori, M., et al., 2000. The DNA sequence of human chromosome 21. Nature 405, 311-319.
    • (2000) Nature , vol.405 , pp. 311-319
    • Hattori, M.1
  • 21
    • 0031757877 scopus 로고    scopus 로고
    • Sequence periodicity in complete genomes of Archaea suggests positive supercoiling
    • Herzel, H., Weiss, O., Trifonov, E.N., 1998. Sequence periodicity in complete genomes of Archaea suggests positive supercoiling. J. Biomol. Struct. Dyn. 16, 341-345.
    • (1998) J. Biomol. Struct. Dyn. , vol.16 , pp. 341-345
    • Herzel, H.1    Weiss, O.2    Trifonov, E.N.3
  • 23
    • 0023189718 scopus 로고
    • Distance analysis helps to establish characteristic motifs in intron sequences
    • Konopka, A.K., Smythers, G.W., Owens, J., Maizel Jr., J.V., 1987. Distance analysis helps to establish characteristic motifs in intron sequences. Gene Anal. Tech. 4, 63-74.
    • (1987) Gene Anal. Tech. , vol.4 , pp. 63-74
    • Konopka, A.K.1    Smythers, G.W.2    Owens, J.3    Maizel Jr., J.V.4
  • 24
    • 0026742792 scopus 로고
    • CpG islands as gene markers in the human genome
    • Larsen, F., Gundersen, G., Lopez, R., Prydz, H., 1992. CpG islands as gene markers in the human genome. Genomics 13, 1095-1107.
    • (1992) Genomics , vol.13 , pp. 1095-1107
    • Larsen, F.1    Gundersen, G.2    Lopez, R.3    Prydz, H.4
  • 25
    • 9544241244 scopus 로고    scopus 로고
    • Large-scale fluctuation of guanine and cytosine content in genome sequences, isochores and 1/f spectra
    • Nova Science, Hauppauge, NY
    • Li, W., 2005. Large-scale fluctuation of guanine and cytosine content in genome sequences, isochores and 1/f spectra. In: Progress in Bioinformatics. Nova Science, Hauppauge, NY.
    • (2005) Progress in Bioinformatics
    • Li, W.1
  • 26
    • 0035984483 scopus 로고    scopus 로고
    • Applications of recursive segmentation to the analysis of DNA sequences
    • Li, W., Bernaola-Galván, P., Haghighi, F., Grosse, I., 2002. Applications of recursive segmentation to the analysis of DNA sequences. Comput. Chem. 26, 491-510.
    • (2002) Comput. Chem. , vol.26 , pp. 491-510
    • Li, W.1    Bernaola-Galván, P.2    Haghighi, F.3    Grosse, I.4
  • 27
    • 9544247650 scopus 로고    scopus 로고
    • Universal 1/f noise, cross-overs of scaling exponents, and chromosome specific patterns of GC content in DNA sequences of the human genome
    • submitted for publication
    • Li, W., Holste, D., 2004. Universal 1/f noise, cross-overs of scaling exponents, and chromosome specific patterns of GC content in DNA sequences of the human genome. Phys. Rev. E., submitted for publication
    • (2004) Phys. Rev. E.
    • Li, W.1    Holste, D.2
  • 28
    • 84956088098 scopus 로고
    • α spectrum in a non-coding DNA sequence
    • α spectrum in a non-coding DNA sequence. Europhys. Lett. 17, 655-660.
    • (1992) Europhys. Lett. , vol.17 , pp. 655-660
    • Li, W.1    Kaneko, K.2
  • 29
    • 0017173987 scopus 로고
    • An approach to the organization of eukaryotic genomes at a macromolecular level
    • Macaya, G., Thiery, J.P., Bernardi, G., 1976. An approach to the organization of eukaryotic genomes at a macromolecular level. J. Mol. Biol. 108, 237-254.
    • (1976) J. Mol. Biol. , vol.108 , pp. 237-254
    • Macaya, G.1    Thiery, J.P.2    Bernardi, G.3
  • 31
    • 16944367194 scopus 로고    scopus 로고
    • Positional cloning of the APECED gene
    • Nagamine, K., et al., 1997. Positional cloning of the APECED gene. Nat. Genet. 17, 393-398.
    • (1997) Nat. Genet. , vol.17 , pp. 393-398
    • Nagamine, K.1
  • 32
    • 0034520771 scopus 로고    scopus 로고
    • Assessment of compositional heterogeneity within and between eukaryotic genomes
    • Nekrutenko, A., Li, W.H., 2000. Assessment of compositional heterogeneity within and between eukaryotic genomes. Genome Res. 10, 1986-1995.
    • (2000) Genome Res. , vol.10 , pp. 1986-1995
    • Nekrutenko, A.1    Li, W.H.2
  • 35
    • 0035802397 scopus 로고    scopus 로고
    • Similar integration but different stability of Alus and LINEs in the human genome
    • Pavliček, A., et al., 2001. Similar integration but different stability of Alus and LINEs in the human genome. Gene 276, 39-45.
    • (2001) Gene , vol.276 , pp. 39-45
    • Pavliček, A.1
  • 36
    • 0025376018 scopus 로고
    • Detection of latent sequence periodicities
    • Pizzi, E., Liuni, S., Frontali, C., 1990. Detection of latent sequence periodicities. Nucleic Acids Res. 18, 3745-3752.
    • (1990) Nucleic Acids Res. , vol.18 , pp. 3745-3752
    • Pizzi, E.1    Liuni, S.2    Frontali, C.3
  • 37
    • 0037202372 scopus 로고    scopus 로고
    • Localization of the generichest and the gene-poorest isochores in the interphase nucleic of mammals and birds
    • Saccone, S., Frederico, C., Bernardi, G., 2002. Localization of the generichest and the gene-poorest isochores in the interphase nucleic of mammals and birds. Gene 300, 169-178.
    • (2002) Gene , vol.300 , pp. 169-178
    • Saccone, S.1    Frederico, C.2    Bernardi, G.3
  • 38
    • 0036307863 scopus 로고    scopus 로고
    • On the role of periodism in the origin of proteins
    • Shiba, K., Takahashi, Y., Noda, T., 2002. On the role of periodism in the origin of proteins. J. Mol. Biol. 320, 833-840.
    • (2002) J. Mol. Biol. , vol.320 , pp. 833-840
    • Shiba, K.1    Takahashi, Y.2    Noda, T.3
  • 39
    • 0032784908 scopus 로고    scopus 로고
    • Interspersed repeats and other mementos of transposable elements in mammalian genomes
    • Smit, A.F., 1999. Interspersed repeats and other mementos of transposable elements in mammalian genomes. Curr. Opin. Genet. Dev. 9, 657-663.
    • (1999) Curr. Opin. Genet. Dev. , vol.9 , pp. 657-663
    • Smit, A.F.1
  • 40
    • 0020039567 scopus 로고
    • Codon preference and its use in identifying protein coding regions in long DNA sequences
    • Staden, R., McLachlan, A.D., 1982. Codon preference and its use in identifying protein coding regions in long DNA sequences. Nucleic Acids Res. 10, 141-156.
    • (1982) Nucleic Acids Res. , vol.10 , pp. 141-156
    • Staden, R.1    McLachlan, A.D.2
  • 41
    • 0019482685 scopus 로고
    • The coding function of nucleotide sequences can be discerned by statistical analysis
    • Shulman, M.J., Steinberg, C.M., Westmoreland, N., 1981. The coding function of nucleotide sequences can be discerned by statistical analysis. J. Theor. Biol. 88, 409-420.
    • (1981) J. Theor. Biol. , vol.88 , pp. 409-420
    • Shulman, M.J.1    Steinberg, C.M.2    Westmoreland, N.3
  • 43
    • 0032770571 scopus 로고    scopus 로고
    • ApA dinucleotide periodicity in prokaryote, eukaryote, and organelle genomes
    • Tomita, M., Wada, M., Kawashima, Y., 1999. ApA dinucleotide periodicity in prokaryote, eukaryote, and organelle genomes. J. Mol. Evol. 49, 182-192.
    • (1999) J. Mol. Evol. , vol.49 , pp. 182-192
    • Tomita, M.1    Wada, M.2    Kawashima, Y.3
  • 44
    • 0001415964 scopus 로고
    • The pitch of chromatin DNA is reflected in its nucleotide sequence
    • Trifonov, E.N., Sussman, J.L., 1980. The pitch of chromatin DNA is reflected in its nucleotide sequence. Proc. Natl. Acad. Sci. 77, 3816-3820.
    • (1980) Proc. Natl. Acad. Sci. , vol.77 , pp. 3816-3820
    • Trifonov, E.N.1    Sussman, J.L.2
  • 45
    • 0032001783 scopus 로고    scopus 로고
    • 3-10.5-200- And 400-base periodicities in genome sequences
    • Trifonov, E.N., 1998. 3-10.5-200- and 400-base periodicities in genome sequences. Physica A 249, 511-516.
    • (1998) Physica A , vol.249 , pp. 511-516
    • Trifonov, E.N.1
  • 46
    • 0030596486 scopus 로고    scopus 로고
    • Short-range order in two eukaryotic genomes, relation to chromosome structure
    • Widom, J., 1996. Short-range order in two eukaryotic genomes, relation to chromosome structure. J. Mol. Biol. 259, 579-588.
    • (1996) J. Mol. Biol. , vol.259 , pp. 579-588
    • Widom, J.1
  • 47
    • 0019887286 scopus 로고
    • Periodicity in DNA primary structure is defined by secondary structure of the coded protein
    • Zhurkin, V.B., 1981. Periodicity in DNA primary structure is defined by secondary structure of the coded protein. Nucleic Acids Res. 9, 1963-1971.
    • (1981) Nucleic Acids Res. , vol.9 , pp. 1963-1971
    • Zhurkin, V.B.1


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