3-, 10.5-, 200- and 400-base periodicities in genome sequences

Physica A: Statistical Mechanics and its Applications

Volumn 249, Issue 1-4, 1998, Pages 511-516

  Trifonov, E N ^a  

^a WEIZMANN INSTITUTE OF SCIENCE   (Israel)

Author keywords

Beat effects; Coding; DNA curvature; Genome units; Nucleosome

Indexed keywords

AMINO ACIDS; BIOSYNTHESIS; DNA SEQUENCES; PROTEINS;

DNA CURVATURE; GENOME UNITS; NUCLEOSOME;

STATISTICAL MECHANICS;

EID: 0032001783     PISSN: 03784371     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0378-4371(97)00510-4     Document Type: Article

References (36)

1. E.N. Trifonov, J.L. Sussman, Proc. Natl. Acad. Sci. USA 77 (1980) 3816.
2. E.N. Trifonov, J. Molec. Biol. 194 (1987) 643.
3. J.C.W. Shepherd, Proc. Natl. Acad. Sci. USA 78 (1981) 1596.
4. M. Eigen, P. Schuster, Naturwissenschaften 65 (1978) 341.
5. J. Lagunez-Otero, E.N. Trifonov, J. Biomolec. Struct. Dyn. 10 (1992) 451.
6. E.N. Trifonov, T. Bettecken, Sequence fossils, triplet expansion, and reconstruction of earliest codons, Gene, in press.
7. E.N. Trifonov, in: A. Pullman, J. Jortner, B. Pullman (Eds.), Modelling of Biomolecular Structures and Mechanisms, Kluwer Academic Publishers, Dordrecht, 1995, p. 461.
8. E.N. Trifonov, Nucl. Acids Res. 8 (1980) 4041.
9. A. Bolshoy, P. McNamara, R.E. Harrington, E.N. Trifonov, Proc. Natl. Acad. Sci. USA 88 (1991) 2312.
10. L. Ulanovsky, M. Bodner, E.N. Trifonov, M. Choder, Proc. Natl. Acad. Sci. USA 83 (1986) 862.
11. J.C. Marini, S.D. Levene, D.M. Crothers, P.T. Englund, Proc. Natl. Acad. Sci. USA 79 (1982) 7664.
12. E.N. Trifonov, CRC Crit. Rev. Biochem. 19 (1985) 89.
13. F.H.C. Crick, Proc. Natl. Acad. Sci. USA 73 (1976) 2639.
14. L.E. Ulanovsky, E.N. Trifonov, Cell Biophys. 5 (1983) 281.
15. I. Ioshikhes, A. Bolshoy, K. Derenshteyn, M. Borodovsky, E.N. Trifonov, J. Molec. Biol. 262 (1996) 129.
16. V.B. Zhurkin, Nucl. Acids Res. 9 (1981) 1963.
17. T.E. Creighton, Proteins: Structure and Molecular Properties, 2nd ed., W.H. Freeman, New York, 1993.
18. A.D. McLachlan, M. Stewart, L.B. Smillie, J. Molec. Biol. 98 (1975) 281.
19. D.A. Denisov, E.S. Shpigelman, E.N. Trifonov, Protective nucleosome centering at splice sites as suggested by sequence-directed mapping of the nucleosomes, Gene, in press.
20. K.E. van Holde, Chromatin, Springer, Berlin, 1988.
21. L.A. Burgoyne, J.D. Skinner, Biochem. Biophys. Res. Commun. 99 (1981) 893.
22. A.T. Khachatrian, V.A. Pospelov, S.B. Svetlikova, V.I. Vorobiev, FEBS Lett. 128 (1981) 90.
23. A.L. Berman, E. Kolker, E.N. Trifonov, Proc. Natl. Acad. Sci. USA 91 (1994) 4044.
24. E.N. Trifonov, J. Biomolec. Struct. Dyn. 14 (1997) 449.
25. J.S. Beckmann, E.N. Trifonov, Proc. Natl. Acad. Sci. USA 88 (1991) 2380.
26. E.N. Trifonov, Bull. Math. Biol. 51 (1989) 417.
27. E. Kolker, E.N. Trifonov, Proc. Natl. Acad. Sci. USA 92 (1995) 557.
28. R.H. Jacobson, X.-J. Zhang, R.F. Dubose, B.W. Matthews, Nature 369 (1994) 761.
29. E. Kolker, E.N. Trifonov, in: R.H. Sarma M.H. Sarma (Eds.), Biological Structure and Dynamics, Aldine Press, Chicago, IL, 1996, p. 257.
30. C.A. Orengo, D.T. Jones, J.M. Thornton, Nature 372 (1994) 631.
31. R.B. Russell, G.J. Barton, J. Molec. Biol. 244 (1994) 332.
32. S.J. Hubbard, P. Argos, J. Molec. Biol. 261 (1996) 289.
33. C. Makhoul, E.N. Trifonov, J. Biomolec. Str. Dyn. 14 (1997) 787.
34. E.N. Trifonov, J. Mol. Evol. 40 (1995) 337.
35. E.N. Trifonov, T. Bettecken, Biochemistry 18 (1979) 454.
36. D. Shore, J. Langowski, R.L. Baldwin, Proc. Natl. Acad. Sci. USA 78 (1981) 4833.