Proteomics of loosely bound cell wall proteins of Arabidopsis thaliana cell suspension cultures: A critical analysis

Electrophoresis

Volumn 24, Issue 19-20, 2003, Pages 3421-3432

  Borderies, Gisèle ^a   Jamet, Elisabeth ^a   Lafitte, Claude ^a   Rossignol, Michel ^a   Jauneau, Alain ^b   Boduart, Georges ^a   Monsarrat, Bernard ^c   Esquerré Tugayé, Marie Thérèse ^a   Boudet, Alain ^a   Pont Lezica, Rafael ^a,d  

^a Centre National de la Recherche Scientifique   (France)

^b CNRS   (France)

^c INSTITUT DE PHARMACOLOGIE ET DE BIOLOGIE STRUCTURALE   (France)

^d NONE   (France)

Author keywords

Arabidopsis thaliana; Cell suspension culture; Cell wall; Mass spectrometry; Proteomics

Indexed keywords

CELL CULTURE; CELL MEMBRANES; CHELATION; ELECTROPHORESIS; EXTRACTION; HYDROGEN BONDS; MOLECULAR BIOLOGY; PLANTS (BOTANY); POSITIVE IONS; PROTEINS; VAN DER WAALS FORCES;

ARABIDOPSIS THALIANA; CELL SUSPENSION CULTURES; CELL WALL PROTEINS; CELL WALLS; CRITICAL ANALYSIS; PROTEOMIC APPROACHES; PROTEOMICS; SAMPLE PREPARATION; SPECTROMETRY TECHNIQUE; THALIANA CELLS;

MASS SPECTROMETRY;

BASIC PROTEIN; CELL MEMBRANE PROTEIN; CELL PROTEIN; CHELATING AGENT; POLYSACCHARIDE;

APOPLAST; ARABIDOPSIS; ARTICLE; BINDING AFFINITY; BIOINFORMATICS; CELL CULTURE; CELL MEMBRANE; CELL SUSPENSION; COMPUTER PROGRAM; CONTROLLED STUDY; COVALENT BOND; CROSS LINKING; EXTRACTION; GENE SEQUENCE; GENOME ANALYSIS; HYDROGEN BOND; HYDROPHOBICITY; HYPOTHESIS; IONIC STRENGTH; MASS SPECTROMETRY; MEMBRANE DAMAGE; MEMBRANE STRUCTURE; MOLECULAR INTERACTION; NONHUMAN; PLANT CELL; PREDICTION; PROTEIN ANALYSIS; PROTEIN LOCALIZATION; PROTEIN SECRETION; PROTEIN STRUCTURE; PROTEOMICS; STRUCTURE ANALYSIS; TWO DIMENSIONAL GEL ELECTROPHORESIS;

EID: 9144258397     PISSN: 01730835     EISSN: None     Source Type: Journal    
DOI: 10.1002/elps.200305608     Document Type: Article

References (49)

1. Roberts, K., Curr. Opin. Cell Biol. 1989, 1, 1020-1027.
2. Roberts, K., Curr. Opin. Cell Biol. 1994, 6, 688-694.
3. Carpita, N., Gibeaut, D., Plant J. 1993, 3, 1-30.
4. Bolwell, G., Int. Rev. Cytol. 1993, 146, 261-324.
5. Bolwell, G., in: Greppin, H. (Ed.), Travelling Shot on Plant Development, University of Geneva Press, Geneva 1997, pp. 255-273.
6. Sakurai, N., J. Plant Res. 1998, 111, 133-148.
7. Brownlee, C., Curr. Opin. Cell Biol. 2002, 5, 396-401.
8. Esquerré-Tugayé, M. T., Boudart, G., Dumas, B., Plant Physiol. Biochem. 2000, 38, 157-163.
9. Carpita, N., Tierney, M., Campbell, M., Plant Mol. Biol. 2001, 47, 1-5.
10. Darley, C., Forrester, A., McQueen-Mason, S., Plant Mol. Biol. 2001, 47, 179-195.
11. Cassab, G. I., Annu. Rev. Plant Physiol. Plant Mol. Biol. 1998, 49, 281-309.
12. Arabidopsis Genome Initiative, Nature 2000, 408, 796-815.
13. Yates, J. R., J. Mass Spectrom. 1998, 33, 1-9.
14. Kuster, B., Mortensen, P., Andersen, J., Mann, M., Proteomics 2001, 1, 641-650.
15. Millar, A., Sweetlove, L., Giege, P., Leaver, C., Plant Physiol. 2001, 127, 1711-1727.
16. Prime, T., Sherrier, D., Mahon, P., LC, P., Dupree, P., Electrophoresis 2000, 21, 3488-3499.
17. Ferro, M., Salvi, D., Rivière-Rolland, H., Vermat, T., Seigneurin-Berny, D., Grunwald, D., Garin, J., Joyard, J., Rolland, N., Proc. Natl. Acad. Sci. USA 2002, 99, 11487-11492.
18. Santoni, V., Rouquié, D., Doumas, P., Mansion, M., Boutry, M., Degand, H., Dupree, P., Packman, L., Sherrier, J., Prime, T., Bauw, G., Posada, E., Rouzé, P., Dehais, P., Sahnoun, I., Barlier, I., Rossignol, M., Plant J. 1998, 16, 633-641.
19. Gallardo, K., Job, C., Groot, S., Puype, M., Demol, H., Vandekerckhove, J., Job, D., Plant Physiol. 2002, 129, 823-837.
20. Pardo, M., Ward, M., Bains, S., Molina, M., Blackstock, W., Gil, C., Nombella, C., Electrophoresis 2000, 21, 3396-3410.
21. Chivasa, S., Ndimba, B., Simon, W., Robertson, D., Yu, X.-L., Knox, J., Bolwell, P., Slabas, A., Electrophoresis 2002, 23, 1754-1765.
22. Axelos, M., Curie, C., Mazzolini, L., Bardet, C., Lescure, B., Plant Physiol. Biochem. 1992, 30, 123-128.
23. Quentin, M., Jauneau, A., Morvan, O., Mareck, A., Gaffé, J., Morvan, C., Plant Physiol. Biochem. 1997, 35, 475-482.
24. Thiéry, J., J. Microsc. 1967, 6, 987-1018.
25. Smith, P. K., Krohn, R. I., Hermanson, G. T., Mallia, A. K., Gartner, F. H., Provenzano, M. D., Fujimoto, E. K., Goeke, N. M., Olson, B. J., Klenk, D. C., Anal. Biochem. 1985, 150, 76-85.
26. Laemmli, U. K., Nature 1970, 227, 680-685.
27. Rabilloud, T., Proteome Research: Two-dimensional Electroporesis and Identification Methods, Springer Berlin, Heidelberg, New York 2000, pp. 1-242.
28. Thompson, J., Higgins, D., Gibson, T., Nucleic Acids Res. 1994, 22, 4673-4680.
29. Pedersen, A., Nielsen, H., Proc. Int. Conf. Intell. Sys. Mol. Biol. 1997, 5, 226-233.
30. Emanuelsson, O., Nielsen, H., Brunak, S., von Heijne, G., J. Mol. Biol. 2000, 300, 1005-1016.
31. Altschul, S. F., Gish, W., Miller, W., Myers, E. W., Lipman, D., J. Mol. Biol. 1990, 215, 403-410.
32. Falquet, L., Pagni, M., Bucher, P., Hulo, N., Sigrist, C., Hofmann, K., Bairoch, A., Nucleic Acids Res. 2002, 30, 235-238.
33. Robertson, D., Mitchell, G., Gilroy, J., Gerrish, C., Bolwell, G., Slabas, A., J. Biol. Chem. 1997, 272, 15841-15848.
34. Smith, J., Muldoon, E., Lamport, D., Phytochemistry 1984, 23, 1233-1239.
35. Selvendran, R. R., O'Neil, M. A., Methods Biochem. Anal. 1987, 32, 25-153.
36. Voigt, J., Planta 1985, 164, 379-389.
37. Oishi, M., Cosloy, S., Nature 1974, 248, 112-116.
38. McGee-Russell, S. M., De Bruijn, W. C., in: McGee-Russel, S. M., Ross, K. F. A. (Eds.), Cell Structure and its Interpretation, Edward Arnold Ltd., London 1968, pp. 115-134.
39. Welinder, K. G., Justesen, A. F., Kjaersgard, I. V. H., Jensen, R. B., Rasmussen, S. K., Jespersen, H. M., Duroux, L., Eur. J. Biochem. 2002, 269, 6063-6081.
40. Østergaard, L., Pedersen, A., Jespersen, H. M., Brunak, S., Welinder, K. G., FEBS Lett. 1998, 433, 98-102.
41. Welinder, K. G., Eur. J. Biochem. 1979, 96, 483-502.
42. Johansson, A., Rasmussen, S. K., Harthill, J. E., Welinder, K. G., Plant Mol. Biol. 1992, 18, 1151-1161.
43. Theilade, B., Rasmussen, S. K., Rosenkrands, I., Frokjaer, H., Hejgaard, J., Theilade, J., Pihakaski-Maunsbach, K., Maunsback, A. B., in: Welinder, K. G., Rasmussen, S., Penel, C., Greppin, H. (Eds.), Plant Peroxidases, Biochemistry and Physiology, University of Geneva, Geneva 1993, pp. 321-324.
44. Pruitt, K., Maglott, D. R., Nucleic Acids Res. 2001, 29, 137-140.
45. Bird, D. A., Facchini, P. J., Planta 2001, 213, 888-897.
46. Bock, A., Wanner, G., Zenk, M. H., Planta 2002, 216, 57-63.
47. Vasta, G., Pont-Lezica, R., in: Mecham, R. P., Adair, W. S. (Eds.), Organization and Assembly of Plant and Animal Extracellular Matrix, Academic Press, Orlando, FL 1990, pp. 173-245.
48. Farrar, K., Evans, M., Topping, J. F., Souter, M. A., Nielsen, J. E., Lindsey, K., Plant J. 2003, 33, 61-73.
49. Sendbrook, J. C., Carroll, K. L., Hung, K. F., Masson, P. H., Somerville, C. R., Plant Cell 2002, 14, 1635-1648.