Computational analyses and annotations of the Arabidopsis peroxidase gene family

FEBS Letters

Volumn 433, Issue 1-2, 1998, Pages 98-102

  Østergaard, Lars ^a   Pedersen, Anders G ^b   Jespersen, Hans M ^a   Brunak, Søren ^b   Welinder, Karen G ^a,c  

^a UNIVERSITY OF COPENHAGEN   (Denmark)

^b TECHNICAL UNIVERSITY OF DENMARK   (Denmark)

^c AALBORG UNIVERSITY   (Denmark)

Author keywords

Adenine rich 5' untranslated region; Neural network prediction; Peroxidase; Plant cDNA; Translational control

Indexed keywords

COMPLEMENTARY DNA; PEROXIDASE;

AMINO ACID SEQUENCE; ARABIDOPSIS; ARTICLE; COMPUTER ANALYSIS; DNA SEQUENCE; ENZYME SPECIFICITY; GENETIC ANALYSIS; MULTIGENE FAMILY; PRIORITY JOURNAL;

ADENINE; AMINO ACID SEQUENCE; ARABIDOPSIS; CODON; DNA, COMPLEMENTARY; MOLECULAR SEQUENCE DATA; PEROXIDASE; POLY A; PROTEIN BIOSYNTHESIS; PROTEIN SORTING SIGNALS; RNA, MESSENGER; SUBSTRATE SPECIFICITY;

EID: 0031840594     PISSN: 00145793     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0014-5793(98)00849-7     Document Type: Article

References (50)

1. Chen, G.X. and Asada, K. (1992) Plant Cell Physiol. 33, 117-123.
2. Roberts, E. and Kolattukudy, P.E. (1989) Mol. Gen. Genet. 217, 223-232.
3. Wallace, G. and Fry, S. (1994) Int. Rev. Cytol. 151, 229-267.
4. Lagrimini, L.M., Gingas, V., Finger, F., Rothstein, S. and Liu, T.Y. (1997) Plant Physiol. 114, 1187-1196.
5. Dunford, H. B. (1991) in: Peroxidases in Chemistry and Biology (Everse, J., Everse, K.E., and Grisham, M.B., Eds.), pp. 1-23, CRC Press, Boca Raton, FL.
6. Welinder, K.G. (1992) in: Plant Peroxidases 1980-1990, Topics and Detailed Literature on Molecular, Biochemical, and Physiological Aspects (Penel, C., Caspar, Th., and Greppin, H., Eds.), pp. 1-24, University of Geneva Press, Geneva.
7. Jespersen, H.M., Kjærsgård, I.V.H., Østergaard, L. and Welinder, K.G. (1997) Biochem. J. 326, 305-310.
8. Joshi, C.P. and Nguyen, H.T. (1995) Nucleic Acids Res. 23, 541-549.
9. Newman, T., de Brujin, F.J., Green, P., Keegstra, K., Kende, H., McIntosh, L., Ohlrogge, J., Raikhel, N., Somerville, S., Thomashow, M., Retzel, E. and Somerville, C. (1994) Plant Physiol. 106, 1241-1255.
10. Cooke, R., Raynal, M., Laudié, M., Grellet, F., Delseny, M., Morris, P.C., Guerrier, D., Giraudat, J., Quigley, F., Clabault, G., Li, Y.F., Mache, R., Krivitzky, M., Gy, J.J., Kreis, M., Lecharny, A., Parmentier, Y., Marbach, J., Fleck, J., Clement, B., Philipps, G., Hervé, C., Bardet, C., Tremousaygue, D., Lescure, B., Lacomme, C., Roby, D., Jourjon, M.F., Chabrier, P., Charpenteau, J.L., Desprez, T., Amselem, J., Chiapello, H. and Höfte, H. (1996) Plant J. 9, 101-124.
11. Welinder, K.G. (1992) Curr. Opin. Struct. Biol. 2, 388-393.
12. Kjærsgård, I.V.H., Jespersen, H.M., Rasmussen, S.K. and Welinder, K.G. (1997) Plant Mol. Biol. 33, 699-708.
13. Intapruk, C., Yamamoto, K., Fujiyama, K., Takano, M. and Shinmyo, A. (1993) J. Ferment. Bioeng. 75, 166-172.
14. Intapruk, C., Takano, M. and Shinmyo, A. (1994) Plant Physiol. 104, 285-286.
15. Østergaard, L., Abelskov, K.A., Mattsson, O. and Welinder, K.G. (1996) FEBS Lett. 398, 243-247.
16. Capelli, N., Tognolli, M., Flach, J., Overney, S., Penel, C., Greppin, H. and Simon, P. (1996) Plant Physiol. 112, 446.
17. Korning, P.G., Hebsgaard, S.M., Rouze, P. and Brunak, S. (1996) Nucleic Acids Res. 24, 316-320.
18. Pedersen, A.G. and Nielsen, H. (1997) in: Proceedings of the Fifth International Conference on Intelligent Systems for Molecular Biology, pp. 226-233, AAAI Press.
19. Nielsen, H., Engelbrecht, J., Brunak, S. and von Heine, G. (1997) Protein Eng. 10, 1-6.
20. Hertz, J., Krogh, A. and Palmer, R.G. (1991) Introduction to the Theory of Neural Computation, Addison-Wesley, Redwood City, CA.
21. Minsky, M. and Papert, S. (1969) Perceptions: An Introduction to Computational Geometry, MIT Press, Cambridge, MA.
22. Brunak, S., Engelbrecht, J. and Knudsen, S. (1990) Nature 343, 123.
23. Brunak, S., Engelbrecht, J. and Knudsen, S. (1991) J. Mol. Biol. 220, 49-65.
24. Qian, N. and Sejnowski, T.J. (1988) J. Mol. Biol. 202, 865-884.
25. Zuker, M. and Stiegler, P. (1981) Nucleic Acids Res. 9, 133-148.
26. Turner, D.H., Sugimoto, N. and Freier, S.M. (1988) Annu. Rev. Biophys. Chem. 17, 167-192.
27. McCaskill, J.S. (1990) Biopolymers 29, 1105-1119.
28. Pesole, G., Prunella, N., Liuni, S., Attimonelli, M. and Saccone, C. (1992) Nucleic Acids Res. 20, 2871-2875.
29. Pesole, G., Attimonelli, M. and Saccone, C. (1996) Methods Enzymol. 266, 281-294.
30. Milanesi, L., Muselli, M. and Arrigo, P. (1996) Comput. Appl. Biosci. 12, 399-404.
31. Kozak, M. (1991) J. Biol. Chem. 266, 19867-19870.
32. Lütcke, H.A., Chow, K.C., Mickel, F.S., Moss, K.A., Kern, H.F. and Scheele, G.A. (1987) EMBO J. 6, 43-48.
33. Joshi, C.P., Zhou, H., Huang, X. and Chiang, V.L. (1997) Plant Mol. Biol. 35, 993-1001.
34. von Heine, G. (1986) Nucleic Acids Res. 14, 4683-4690.
35. Welinder, K.G. (1976) FEBS Lett. 72, 19-23.
36. Morita, Y., Mikami, B., Yamashita, H., Lee, J.Y., Aibara, S., Sato, M., Katsube, Y. and Tanaka, N. (1991) in: Biochemical, Molecular, and Physiological Aspects of Plant Peroxidases (Lobarewski, J., Greppin, H., Penel, C. and Gaspar, Th., Eds.), pp. 81-88, Univeristy of Geneva Press, Geneva.
37. Fujiyama, K., Takemura, H., Shinmyo, A., Okada, H. and Takano, M. (1990) Gene 89, 163-169.
38. Buffard, D., Breda, C., van Huystee, R.B., Asemoto, O., Pierre, M., Ha, D.B. and Esnault, R. (1990) Proc. Natl. Acad. Sci. USA 87, 8874-8878.
39. Kozak, M. (1991) Gene Express. 1, 111-115.
40. Joshi, C.P. (1987) Nucleic Acids Res. 15, 9627-9640.
41. Wickens, M. (1990) Trends Biochem. Sci. 15, 277-281.
42. Luehrsen, K.R. and Walbot, V. (1994) Genes Dev. 8, 1117-1130.
43. Jaglo-Ottosen, K.R., Gilmour, S.J., Zarka, D.G., Schabenberger, O. and Thomashow, M.F. (1998) Science 280, 104-106.
44. Stockinger, E.J., Gilmour, S.J. and Thomashow, M.F. (1997) Proc. Natl. Acad. Sci. USA 94, 1035-1040.
45. Yamaguchi-Shinozaki, K. and Shinozaki, K. (1994) Plant Cell 6, 251-264.
46. Nielsen, F.C., Gammeltoft, S. and Christiansen, J. (1990) J. Biol. Chem. 265, 13431-13434.
47. Fütterer, J. and Hohn, T. (1996) Plant Mol. Biol. 32, 159-189.
48. Teerink, H., Kasperaitis, M.A., De-Moor, C.H., Voorma, H.O. and Thomas, A.A. (1994) Biochem. J. 303, 547-553.
49. Hess, M.A. and Duncan, R.F. (1996) Nucleic Acids Res. 24, 2441-2449.
50. Pitto, L., Gallie, D.R. and Walbot, V. (1992) Plant Physiol. 100, 1827-1833.