Cortical surface-based analysis: II. Inflation, flattening, and a surface-based coordinate system

NeuroImage

Volumn 9, Issue 2, 1999, Pages 195-207

  Fischl, Bruce ^a   Sereno, Martin I ^b   Dale, Anders M ^a  

^a HARVARD MEDICAL SCHOOL   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

Atlas; Coordinate systems; Cortical surface reconstruction; Flattening

Indexed keywords

BRAIN CORTEX; BRAIN MAPPING; GEOMETRY; HEMISPHERE; HUMAN; IMAGE RECONSTRUCTION; IMAGING SYSTEM; PRIORITY JOURNAL; REVIEW;

EID: 0032799993     PISSN: 10538119     EISSN: None     Source Type: Journal    
DOI: 10.1006/nimg.1998.0396     Document Type: Article

References (66)

1. Atkins M. S., Mackiewich B. T. Automated Segmentation of the Brain in MRI. 1996.
2. Bullmore E., Brammer M., Rouleau G., Everitt B., Simmons A., Sharma T., Frangou S., Murray R., Dunn G. Computerized Brain tissue classification of magnetic resonance images: A new approach to the problem of partial volume artifact. NeuroImage. 2:1995;133-147.
3. Carman G. J., Drury H. A., Van Essen D. C. Computational Methods for reconstructing and unfolding the cerebral cortex. Cerebral Cortex. 1995.
4. Collins D. L., Neelin P., Peters T. M., Evans A. C. Data in Standardized Talairach Space. J. Comput. Assist. Tomogr. 18:1994;292-205.
5. Culham J. C., Brandt S. A., Cavanagh P., Kanwisher N. G., Dale A. M., Tootell R. B. H. Cortical fMRI activation produced by attentive tracking of moving targets. J. Neurophysiol. 1998.
6. Dale A. M., Fischl B., Sereno M. I. Cortical Surface-Based Analysis I: Segmentation and Surface Reconstruction. NeuroImage. 1998.
7. Dale A. M., Sereno M. I. Improved localization of cortical activity by combining EEG and MEG with MRI cortical surface reconstruction: A linear approach. J. Cogn. Neurosci. 5:1993;162-176.
8. Davatzikos C. Spatial Transformation and Registration of Brain Images Using Elastically Deformable Models. Comput. Vision Image Understand. 66:1997;207-222.
9. Davatzikos C., Bryan R. N. Using a Deformable Surface Model to Obtain a Shape Representation of the Cortex. IEEE Trans. Med. Imag. 15:1996;785-795.
10. DeYoe E. A., Carman G. J., Bandettini P., Glickman S., Wieser J., Cox R., Miller D., Neitz J. Mapping striate and extrastriate visual areas in human cerebral cortex. Proc. Natl. Acad. Sci. USA. 93:1996;2382-2386.
11. Dijkstra E. W. A note on two problems in connexion with graphs. Numerische Mathematik. 1:1959;269-271.
12. do Carmo M. Differential Geometry of Curves and Surfaces. 1976;Prentice-Hall, Englewood Cliffs.
13. Drury H. A., Van Essen D. C., Anderson C. H., Lee C. W., Coogan T. A., Lewis J. W. Computerized Mappings of the Cerebral Cortex: A Multiresolution Flattening Method and a Surface-Based Coordinate System. J. Cogn. Neurosci. 8:1996;1-28.
14. Drury H. A., Van Essen D. C., Joshi S. C., Miller M. I. Analysis and comparison of areal partitioning schemes using two-dimensional fluid deformations. NeuroImage. 3:1996.
15. Drury H. A., Van Essen D. C., Snyder A. Z., Shulman G. L., Akbudak E., Ollinger J. M., Conturo T. E., Raichle M., Corbetta M. Warping fMRI activation patterns onto the visible man atlas using fluid deformations of cortical flat maps. NeuroImage. 5:1997.
16. Engel S. A., Glover G. H., Wandell B. A. Retinotopic Organization In Human Visual Cortex and the Spatial Precision Of Functional MRI. Cerebral Cortex. 7:1997;181-192.
17. Felleman D., Van Essen D. C. Distributed hierarchical processing in primate cerebral cortex. Cerebral Cortex. 1:1991;1-47.
18. Fischl B., Dale A. M., Sereno M. I., Tootell R. B. H., Rosen B. R. A coordinate system for the cortical surface. NeuroImage. 7:1998;S740.
19. Gauss K. F. Disquisitiones generales circa superficies curvas. Comm. Soc. Gottingen. Bd 6:1828;1823-1827.
20. Hadjikhani N. K., Liu A. K., Dale A. M., Cavanagh P., Tootell R. B. H. Retinotopy and color sensitivity in human visual cortical area V8. Nature Neurosci. 1:1998;235-241.
21. Halgren E., Dale A. M., Buckner R. L., Marinkovic K., Destrieux C., Fischl B., Rosen B. R. Cortical location of implicit repetition effects in a size-judgment task to visually-presented words. NeuroImage. 1998.
22. Halgren E., Dale A. M., Sereno M. I., Tootell R. B. H., Marinkovic K., Rosen B. R. Location of human face-selective cortex with respect to retinotopic areas. Hum. Brain Map. 1998.
23. Kaas J. H., Krubitzer L. A. The organization of extrastriate visual cortex. Neuroanatomy of Visual Pathways and their Retinotopic Organization. 1991;Macmillan, London. p. 302-359.
24. Liu A. K., Belliveau J. W., Dale A. M. Spatiotemporal imaging of human brain activity using fMRI constrained MEG data: Monte Carlo simulations. Proc. Natl. Acad. Sci. USA. 95:1998a;8945-8950.
25. Liu A. K., Dale A. M., Ahlfors S., Aronen H., Huotilainen M., Ilmoniemi R., Korvenoja A., Simpson G., Tootell R. B. H., Virtanen J., Belliveau J. W. Spatiotemporal Imaging of Motion Selective Areas in Human Cortex Using Combined fMRI and MEG. 1998b;ISMRM, Berkeley.
26. Liu A. K., Dale A. M., Sereno M. I., Rosen B. R., Belliveau J. W. fMRI-Constrained Linear Estimation of Cortical Activity from MEG and EEG Measurements: A Model Study. 1996;Springer Verlag.
27. MacDonald D. A Method for Identifying Geometrically Simple Surfaces from Three Dimensional Images. 1998;Montreal Neurological InstituteMcGill University, Montreal.
28. Moore C. I. Some principles of somatosensory cortical organization in rats and humans. Brain Cogn. Sci. 1998.
29. Moore C. I., Gehi A., Corkin S., Rosen B. R., Stern C., Dale A. Basic and Fine Somatotopy in Human SI. 1997;The Cognitive Neuroscience Society, San Francisco.
30. Moore C. I., Stern C. E., Corkin S., Gray A., Thelusma F., Rosen B. R., Dale A. M. Segregation of Multiple Somatosensory Maps within the Human Postcentral Gyrus Using fMRI. NeuroImage. 7:1998.
31. Morel A., Kaas J. J. Subdivisions and connections of auditory cortex in owl monkeys. J. Comp. Neurol. 318:1992;27-63.
32. Mortenson M. E. Geometric Modeling. 1997;Wiley, New York.
33. Press W. H., Teukolsky S. A., Vetterling W. T., Flannery B. P. Numerical Recipes in C. 1994;Cambridge Univ. Press, Cambridge.
34. Reppas J. B., Niyogi S., Dale A. M., Sereno M. I., Tootell R. B. H. Representation of motion boundaries in retinotopic human visual cortical areas. Nature. 388:1997;175-179.
35. Schwartz E. L. Spatial mapping in the primate sensory projection: Analytic structure and relevance to perception. Biol. Cybernet. 25:1977;181-194.
36. Schwartz E. L. Computational anatomy and functional architecture of striate cortex: A spatial mapping approach to perceptual coding. Vision Res. 20:1980;645-669.
37. Schwartz E. L., Merker B. Computer-Aided Neuroanatomy: Differential Geometry of Cortical Surfaces and an Optimal Flattening Algorithm. IEEE Comp. Graph. Appl. 6:1986;36-44.
38. Schwartz E. L., Shaw A., Wolfson E. A numerical solution to the generalized mapmaker's problem: Flattening nonconvex polyhedral surfaces. IEEE Transactions on Pattern Analysis and Machine Intelligence. 11:1989;1005-1008.
39. Sereno M. I., Allman J. M. Leventhal A. G. Cortical visual areas in mammals. The Neural Basis of Visual Function. 1991;160-172 Macmillan, London.
40. Sereno M. I., Dale A. M., Liu A., Tootell R. B. H. A Surface-based Coordinate System for a Canonical Cortex. NeuroImage. 1996.
41. Sereno M. I., Dale A. M., Reppas J. B., Kwong K. K., Belliveau J. W., Brady T. J., Rosen B. R., Tootell R. B. H. Borders of multiple visual areas in humans revealed by functional magnetic resonance imaging. Science. 268:1995;889-893.
42. Stepniewska I., Preuss T. M., Kaas J. H. Architectonics, somatotopic organization, and ipsilateral cortical connections of the primary motor area (M1) in owl monkeys. J. Comp. Neurol. 330:1993;238-271.
43. Székely G., Kelemen A., Brechbühler C., Gerig G. Segmentation of 3D Objects from MRI Volume Data Using Constrained Elastic Deformations of Flexible Fourier Surface Models. 1995.
44. Talairach J., Szikla G., Tournoux P., Prosalentis A., Bordas-Ferrier M., Covello L., Iacob M., Mempel E. Atlas d'Anatomie Stereotaxique du Telencephale. 1967;Masson, Paris.
45. Talairach J., Tournoux P. Co-Planar Stereotaxic Atlas of the Human Brain. 1988;Thieme Medical Publishers.
46. Talavage. Primary Auditory Cortex. HST. 1998;MIT, Boston.
47. Talavage T., Ledden P., MI S., Rosen B., Dale A. Multiple phase-encoded tonotopic maps in human auditory cortex. NeuroImage. 5:1997a.
48. Talavage T., Ledden P., Sereno M., Benson R., Melcher J., Rosen B., Dale A. Phase-encoded tonotopic maps in human auditory cortex. ISMRM. 5:1997b;6.
49. Talavage T., Ledden P., Sereno M., Benson R., Rosen B. Preliminary fMRI evidence for tonotopicity in human auditory cortex. NeuroImage. 3:1996.
50. Talavage T. M. Functional magnetic resonance imaging of the frequency organization of human auditory cortex. 1998;MIT, Boston.
51. Teo P. C., Sapiro G., Wandell B. A. Creating Connected Representations of Cortical Gray Matter for Functional MRI Visualization. IEEE Trans. Med. Imag. 16:1997;852-863.
52. Thompson P., Schwartz C., Lin R. T., Khan A. A., Toga A. W. Three-dimensional statistical analysis of sulcal variability in the human brain. J. Neurosci. 16:1996;4261-4274.
53. Thompson P. M., Toga A. W. A surface-based technique for warping 3-dimensional images of the brain. IEEE Trans. Med. Imag. 15:1996;1-16.
54. Tootell R. B. H., Dale A. M., Mendola J. D., Reppas J. B., Sereno M. I. fMRI analysis of human visual cortical area V3A. NeuroImage. 3:1996a;S358.
55. Tootell R. B. H., Hadjikhani N. K., Vanduffel W., Liu A. K., Mendola J. D., Sereno M. I., Dale A. M. Functional analysis of primary visual cortex (V1) in humans. Proc. Natl. Acad. Sci. USA. 95:1998a;811-817.
56. Tootell R. B. H., Mendola J. D., Hadjikhani N. K., Ledden P. J., Liu A. K., Reppas J. B., Sereno M. I., Dale A. M. Functional analysis of V3A and related areas in human visual cortex. J. Neurosci. 17:1997;7060-7078.
57. Tootell R. B. H., Mendola J. D., Hadjikhani N. K., Liu A. K., Dale A. M. The representation of the ipsilateral visual field in human cerebral cortex. Proc. Natl. Acad. Sci. USA. 95:1998b;818-824.
58. Tootell R. B. H., Reppas J. B., Dale A. D., Look R. B., Malach R., Jiang H.-J., Brady T. J., Rosen B. R., Belliveau J. W. Visual motion aftereffect in human cortical area MT/V5 revealed by functional magnetic resonance imaging. Nature. 375:1995a;139-141.
59. Tootell R. B. H., Reppas J. B., Kwong K. K., Malach R., Born R. T., Brady T. J., Rosen B. R., Belliveau J. W. Functional analysis of human MT and related visual cortical areas using magnetic resonance imaging. J. Neurosci. 15:1995b;3215-3230.
60. Tootell R. H. B., Dale A. M., Sereno M. I., Malach R. M. New images from human visual cortex. Trends Neurosci. 19:1996b;481-489.
61. Van Essen D. C., Drury H. A. Structural and Functional Analyses of Human Cerebral Cortex Using a Surface-Based Atlas. J. Neurosci. 17:1997;7079-7102.
62. Van Essen D. C., Drury H. A., Joshi S., Miller M. I. Functional and Structural Mapping of Human Cerebral Cortex: Solutions are in the Surfaces. Proc. Natl. Acad. Sci. USA. 1998.
63. Wells W., Grimson W., Kikinis R., Jolesz F. Adaptive Segmentation of MRI Data. IEEE Trans. Med. Imag. 15:1996;429-442.
64. Wells W., Kikinis R., Jolesz F. A. Statistical Intensity Correction and Segmentation of Magnetic Resonance Image Data. 1994.
65. Wolfson E., Schwartz E. L. Computing minimal distances on polyhedral surfaces. IEEE Trans. Pattern Anal. Machine Intel. 11:1989;1001-1005.
66. Zilles K., Armstrong E., Schleicher A., Kretschmann H.-J. The human pattern of gyrification in the cerebral cortex. Anat. Embryol. 179:1988;173-179.