Automated extraction and variability analysis of sulcal neuroanatomy

IEEE Transactions on Medical Imaging

Volumn 18, Issue 3, 1999, Pages 206-217

  Goualher, Georges Le ^a   Procyk, Emmanuel ^a   Louis Collins, D ^a   Venugopal, Raghu ^a   Barillot, Christian ^a   Evans, Alan C ^a  

^a MCGILL UNIVERSITY   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

AUTOMATION; BRAIN; FEATURE EXTRACTION; NEUROPHYSIOLOGY; PHYSIOLOGICAL MODELS; STATISTICAL METHODS;

NEUROANATOMY; SULCAL EXTRACTION; SULCAL LABELING;

MEDICAL IMAGING;

ALGORITHM; BRAIN CORTEX; HISTOLOGY; HUMAN; IMAGE PROCESSING; METHODOLOGY; NUCLEAR MAGNETIC RESONANCE IMAGING; REPRODUCIBILITY; REVIEW; STATISTICAL MODEL; STATISTICS;

ALGORITHMS; CEREBRAL CORTEX; HUMANS; IMAGE PROCESSING, COMPUTER-ASSISTED; LIKELIHOOD FUNCTIONS; MAGNETIC RESONANCE IMAGING; REPRODUCIBILITY OF RESULTS;

EID: 0032587714     PISSN: 02780062     EISSN: None     Source Type: Journal    
DOI: 10.1109/42.764891     Document Type: Article

References (47)

1. W. I. Welker and S. Seidenstein Somatic sensory representation in the cerebral cortex of the racoon (procyon lotor)," J. Comp. Neural., pp. 459501, 1959.
2. J. D. G. Watson, R. Myers, R. S. J. Frackowiak, J. V. Hajnal, R. P. Woods, J. C. Mazziota, S. Shipp, and S. Zeki Area V5 of the human brain: Evidence form a combined study using positron emission tomography and magnetic resonance imaging," Cerebral Cortex, vol. 3, pp. 7994, 1993.
3. S. Zeki, J. D. G. Watson, C. J. Lueck, K. J. Friston, C. Kennard, and R. S. J. Frackowiak A direct demonstration functional specialization in human visual cortex," J. Neurosci., vol. 11, no. 3, pp. 641649, 1991.
4. M. Ono, S. Kubick, and C. D. Albernathey, Atlas of the Cerebral Sulcl. New York: Georg Thieme Verlag, 1990.
5. G. Le Goualher, C. Barillot, and Y. Bizais Modeling cortical sulci using active ribbons," Int. J. Pattern Recognit. Artific. Intell., vol. 11, no. 8, pp. 12951315, 1997.
6. H. Steinmetz, G. Fürst, and H. J. Freund Variation of perisylvian and calcarine anatomic landmarks within stereotaxic proportional coordinates," Amer. J. NeuroradioL, vol. 11, pp. 11231130, Nov./Dec. 1990.
7. T. Paus, N. Otaky, Z. Caramanos, D. MacDonald, A. Zijdenbos, D. D'avirro, D. Gutmans, C. Holmes, F. Tomaiuolo, and A. C. Evans In vivo morphometry of the intrasulcal gray matter in the human cingulate, paracingulate, and superiorrostral sulci: Hemispheric asymétries , gender differences and probability maps," J. Comparative Neurology, vol. 376, pp. 664673, 1996.
8. O. Missir, C. DutheilDesclercs, J. F. Meder, A. Mussolino, and D. Fredy Central sulcus patterns at MRI," J. NeuroradioL, vol. 16, pp. 133144, 1989.
9. H. Steinmetz, G. Fürst, and H. J. Freund Cerebral cortical localization: Application and validation of the proportional grid system in MR imaging," J. Comput. Assisted Tomogr., vol. 13, no. 1, pp. 1019, JanVFeb. 1989.
10. J. C. Mazziota, A. W. Toga, A. C. Evans, P. Fox, and J. Lancaster A probabilistic atlas of the human brain: Theory and rationale for its development," Neuroimage, vol. 2, pp. 89101, 1995.
11. T. Cootes, D. H. Cooper, C. J. Taylor, and J. Graham Trainable method of parametric shape description," Image Vision Comput., vol. 10, no. 5, pp. 289294, June 1992.
12. G. Subsol, N. Roberts, M. Doran, J. P. Thirion, and G. H. Whitehouse Automatic analysis of cerebral atrophy," Magn. Reson. Imag., vol. 15, no. 8, pp. 91727, 1997.
13. S. Sclaroff and A. P. Pentland Modal matching for correspondence and recognition," IEEE Trans. Pattern Anal. Machine Intell., vol. 17, pp. 545561, June 1995.
14. J. Talairach and P. Tournoux, CoPlanar Stereotactic Atlas of the Human Brain: 3 Dimensional Proportional System: An Approach to Cerebral Imaging. New York: Georg Thieme Verlag, 1988.
15. R. Bajcsy and S. Kovacic Multiresolution elastic matching," Comput. Vision, Graph. Image Processing, vol. 46, pp. 121, 1989.
16. F. L. Bookstein Thinplate splines and the atlas problem for biomédical images," Informat. Processing Med. Imag., Lecture Notes Comput. Sci., vol. 511, pp. 326342, 1991.
17. D. L. Collins, T. M. Peters, and A. C. Evans An automated 3D nonlinear image deformation procedure for determination of gross morphometric variability in human brain," in Proc. Conf. Visualization Biomédical Computing, 1994.
18. J. C. Gee, L. Le Briquer, and C. Barillot Probabilistic matching of brain images," in Information Processing in Medical Imaging (IPMI), Y. Bizais and C. Barillot, Eds. He Berder, France: Kluwer, July 1995.
19. G. E. Christensen, R. D. Rabbitt, and M. I. Miller Deformable templates using largedeformation kinematics," IEEE Trans. Med. Imag., vol. 5, pp. 14351447, Oct. 1996.
20. D. L. Collins, G. Le Goualher, R. Venugopal, Z. Caramanos, A. C. Evans, and C. Barillot Cortical constraints for nonlinear cortical registration," in Visualization in Biomédical Computing, K. H. Höene, Ed. Hamburg, Germany, 1996, pp. 307316.
21. W. F. C. Barre, D. L. Collins, N. Kabani, D. MacDonald, C. Liu, M. Petrides, R. S. Kahn, and A. C. Evans Automated and manual identification of frontal lobe gyral cortex: A statistical probabilistic anatomical analysis," Human Brain Mapping, vol. 4, p. S348, 1997.
22. N. Royackkers, H. Fawal, M. Desvignes, M. Revenu, and J. M. Travere Feature extraction for cortical sulci identification," in Proc. 9th Scandinavian Conf. Image Analysis, June 1995, vol. 2, pp. 110121.
23. D. MacDonald, R. Venugopal, Z. Caramanos, M. Petrides, D. Avis, and A. C. Evans A surfacebased 2D sulcal atlas," Human Brain Mapping, vol. 4, p. S414, 1997.
24. A. Dabringhaus, T. Schormann, H. Steinmetz, G. Schlaug, K. Zilles, and P. E. Roland What is a standard brain? Intersubject variability of the shape of the human forebrain," Human Brain Mapping, 1995.
25. S. Sandor and R. Leahy Surfacebased labeling of cortical anatomy using a deformable atlas," IEEE Trans. Med. Imag., vol. 16, pp. 4154, Feb. 1997.
26. G. Szekely, C. Brechuhler, O. Kubler, R. Ogniewickz, and T. Budinger, "Mapping the human cerebral cortex using 3D medial manifolds," SPIE Visualization Biomed. Comput., vol. 1808, pp. 130144, 1992.
27. J. F. Mangin, V. Frouin, I. Bloch, J. Régis, and J. LopezKrahe Automatic construction of an attributed relational graph representing the cortex topography using homotopic transformations," SPIE Math. Methods Med. Imag. Ill, vol. 2299, pp. 110121, July 1994.
28. C. Barillot, S. Champmartin, G. Le Goualher, B. Gibaud, and J. M. Scarabin Probabilistic modeling of brain sulci based on statistical analysis of 3D surfaces," Human Brain Mapping, p. S0716, 1998.
29. C. Barillot, D. Schwartz, G. Le Goualher, B. Gibaud, and J. M. Scarabin 3D representation of MEG/EEG data in a 3D morphological environment," Comput. Assisted Radial, pp. 249254, 1996.
30. M. Vaillant, C. Davatzikos, and R. N. Bryan Finding 3D parametric representations of deep cortical folds," in Workshops Mathematical Methods Biomédical Image Analysis, 1996, pp. 151159.
31. J. F. Mangin, J. Régis, I. Bloch, V. Frouin, Y. Samson, and J. LopezKrahe A MRF based random graph modeling the human cortical topography," in Proc. CVRMed, Nice, France, Apr. 1995, pp. 177183.
32. J. G. Sled, A. P. Zijdenbos, and A. C. Evans A nonparametric method for automatic correction of intensity nonuniformity in MRI data," IEEE Trans. Med. Imag., vol. 17, pp. 8797, Feb. 1998.
33. D. L. Collins, P. Neelin, T. M. Peters, and A. C. Evans Automatic 3D intersubject registration of MR volumetric data in standardized Talairach space," J. Comput. Assisted Tomogr., vol. 18, no. 2, pp. 192205, Mar./Apr. 1994.
34. A. Zijdenbos, A. C. Evans, F. Riahi, J. Sled, J. Chui, and V. Kollokian Automatic quantification of multiple sclerosis lesion volume using stereotaxic space," in Proc. Visualization in Biomédical Computing (VBC), 4th Int. Conf., Sept. 1996, pp. 439448.
35. D. MacDonald, D. Avis, and A. C. Evans Multiple surface identification and matching in magnetic resonance images," in Visualization in Biomédical Computing (VBC), Rochester, NY, 1994, vol. 2359, pp. 160169.
36. J. Serra, Image Analysis and Mathematical Morphology. London, U.K.: Academic, 1982.
37. G. Le Goualher, C. Barillot, L. Le Briquer, and Y. Bizais 3D detection and representation of cortical sulci," in Proc. Computer Assisted Radiology, CAR'95, 1995.
38. J. B. Antoine Maintz, Petra A. van den Elsen, and M. A. Viergever Evaluation of ridge seeking operators from multimodality medical image matching," IEEE Trans. Pattern Anal. Machine Intel!., vol. 18, Apr. 1996.
39. G. Malandin, G. Bertrand, and N. Ayache Topological segmentation of discrete surfaces," in Int. J. Comput. Vision, vol. 10, no. 2, pp. 183197, 1993.
40. M. Kass, A. Witkin, and D. Terzopoulos Snakes: Active contour models," Int. J. Comput. Vision, vol. 1, no. 4, pp. 321331, 1988.
41. F. Leitner, I. Marque, S. Lavallée, and P. Cinquin Dynamic segmentation: Finding the edge with snakesplines," in Proc. Int. Conf. Curves Surfaces, 1990, pp. 279284.
42. G. Borgefors Distance transformation in arbitrary dimensions," Comput. Vision, Graph. Image Processing, vol. 27, pp. 321345, 1984.
43. D. MacDonald MNIdisplay: Program for display and segmentation of surfaces and volumes McConnell Brain Imaging Center MNI, Tech. Rep. 199. Available http://www.bic.mni.mcgill. ca/software/Display/Display.html.
44. R. Kwan, A. C. Evans, and G. B. Pike An extensible MRI simulator for postprocessing evaluation," in Proc. 4th Int. Conf. Visualization Biomédical Computing (VBC), Hamburg, Germany, Sept. 1996, pp. 135140.
45. D. L. Collins, A. P. Zijdenbos, V. Kollokian, J. G. Sled, N. J. Kabani, C. J. Holmes, and A. C. Evans Design and construction of a realistic digital brain phantom," IEEE Trans. Med. Imag., vol. 17, pp. 463468, June 1998.
46. A. C. Evans, D. L. Collins, C. Holmes, T. Paus, D. MacDonald, A. Zijdenbos, A. Toga, P. Fox, J. Lancaster, and J. Mazziota A 3D probabilistic atlas of normal human neuroanatomy," Human Brain Mapping, vol. 4, p. S349, 1997.
47. Z. Caramanos, R. Venugopal, D. L. Collins, D. MacDonald, A. C. Evans, and M. Petrides Human brain sulcal anatomy: An MRIbased study," Human Brain Mapping, vol. 4, p. S350, 1997.