-
1
-
-
85053361395
-
Statistical quantification of individual differences (SQuID): An educational and statistical tool for understanding multilevel phenotypic data in linear mixed models
-
Allegue, H., Araya-Ajoy, Y. G., Dingemanse, N. J., Dochtermann, N. A., Garamszegi, L. Z., Nakagawa, S., … Westneat, D. F. (2017). Statistical quantification of individual differences (SQuID): An educational and statistical tool for understanding multilevel phenotypic data in linear mixed models. Methods in Ecology and Evolution, 8, 257–267. https://doi.org/10.1111/2041-210X.12659
-
(2017)
Methods in Ecology and Evolution
, vol.8
, pp. 257-267
-
-
Allegue, H.1
Araya-Ajoy, Y.G.2
Dingemanse, N.J.3
Dochtermann, N.A.4
Garamszegi, L.Z.5
Nakagawa, S.6
Westneat, D.F.7
-
2
-
-
79961005150
-
A note on the indeterminacy of the random-effects distribution in hierarchical models
-
Alonso, A., Litiere, S., & Laenen, A. (2010). A note on the indeterminacy of the random-effects distribution in hierarchical models. The American Statistician, 64, 318–324. https://doi.org/10.1198/tast.2010.09244
-
(2010)
The American Statistician
, vol.64
, pp. 318-324
-
-
Alonso, A.1
Litiere, S.2
Laenen, A.3
-
3
-
-
84881568208
-
The effect of skewness and kurtosis on the robustness of linear mixed models
-
Arnau, J., Bendayan, R., Blanca, M. J., & Bono, R. (2013). The effect of skewness and kurtosis on the robustness of linear mixed models. Behavior Research Methods, 45, 873–879. https://doi.org/10.3758/s13428-012-0306-x
-
(2013)
Behavior Research Methods
, vol.45
, pp. 873-879
-
-
Arnau, J.1
Bendayan, R.2
Blanca, M.J.3
Bono, R.4
-
4
-
-
84943645306
-
Fitting linear mixed-effects models using lme4
-
Bates, D., Mächler, M., Bolker, B., & Walker, S. (2015). Fitting linear mixed-effects models using lme4. Journal of Statistical Software, 67, 1–48.
-
(2015)
Journal of Statistical Software
, vol.67
, pp. 1-48
-
-
Bates, D.1
Mächler, M.2
Bolker, B.3
Walker, S.4
-
7
-
-
60949108998
-
Generalized linear mixed models: A practical guide for ecology and evolution
-
Bolker, B. M., Brooks, M. E., Clark, C. J., Geange, S. W., Poulsen, J. R., Stevens, M. H. H., & White, J.-S.-S. (2009). Generalized linear mixed models: A practical guide for ecology and evolution. Trends in Ecology & Evolution, 24, 127–135. https://doi.org/10.1016/j.tree.2008.10.008
-
(2009)
Trends in Ecology & Evolution
, vol.24
, pp. 127-135
-
-
Bolker, B.M.1
Brooks, M.E.2
Clark, C.J.3
Geange, S.W.4
Poulsen, J.R.5
Stevens, M.H.H.6
White, J.-S.-S.7
-
8
-
-
0001135785
-
Sampling and Bayes inference in scientific modeling and robustness
-
Box, G. E. P. (1980). Sampling and Bayes inference in scientific modeling and robustness. Journal of the Royal Statistical Society A, 143, 383–430.
-
(1980)
Journal of the Royal Statistical Society A
, vol.143
, pp. 383-430
-
-
Box, G.E.P.1
-
9
-
-
0028980810
-
Visualizing and quantifying natural selection
-
Brodie, E. D., Moore, A. J., & Janzen, F. J. (1995). Visualizing and quantifying natural selection. Trends in Ecology & Evolution, 10, 313–318. https://doi.org/10.1016/S0169-5347(00)89117-X
-
(1995)
Trends in Ecology & Evolution
, vol.10
, pp. 313-318
-
-
Brodie, E.D.1
Moore, A.J.2
Janzen, F.J.3
-
10
-
-
76549111368
-
Real longitudinal data analysis for real people: Building a good enough mixed model
-
Cheng, J., Edwards, L. J., Maldonado-Molina, M. M., Komro, K. A., & Muller, K. E. (2010). Real longitudinal data analysis for real people: Building a good enough mixed model. Statistics in Medicine, 29, 504–520.
-
(2010)
Statistics in Medicine
, vol.29
, pp. 504-520
-
-
Cheng, J.1
Edwards, L.J.2
Maldonado-Molina, M.M.3
Komro, K.A.4
Muller, K.E.5
-
11
-
-
80955145754
-
Neglected biological patterns in the residuals: A behavioural ecologist's guide to co-operating with heteroscedasticity
-
Cleasby, I. R., & Nakagawa, S. (2011). Neglected biological patterns in the residuals: A behavioural ecologist's guide to co-operating with heteroscedasticity. Behavioral Ecology and Sociobiology, 65, 2361–2372. https://doi.org/10.1007/s00265-011-1254-7
-
(2011)
Behavioral Ecology and Sociobiology
, vol.65
, pp. 2361-2372
-
-
Cleasby, I.R.1
Nakagawa, S.2
-
12
-
-
84921497834
-
Quantifying the predictability of behaviour: Statistical approaches for the study of between-individual variation in the within-individual variance
-
Cleasby, I. R., Nakagawa, S., & Schielzeth, H. (2015). Quantifying the predictability of behaviour: Statistical approaches for the study of between-individual variation in the within-individual variance. Methods in Ecology and Evolution, 6, 27–37. https://doi.org/10.1111/2041-210X.12281
-
(2015)
Methods in Ecology and Evolution
, vol.6
, pp. 27-37
-
-
Cleasby, I.R.1
Nakagawa, S.2
Schielzeth, H.3
-
13
-
-
15544371183
-
Influence analysis for linear mixed-effects models
-
Demidenko, E., & Stukel, T. A. (2005). Influence analysis for linear mixed-effects models. Statistics in Medicine, 24, 893–909. https://doi.org/10.1002/sim.1974
-
(2005)
Statistics in Medicine
, vol.24
, pp. 893-909
-
-
Demidenko, E.1
Stukel, T.A.2
-
14
-
-
78650726296
-
Dealing with collinearity in behavioural and ecological data: Model averaging and the problems of measurement error
-
Freckleton, R. P. (2011). Dealing with collinearity in behavioural and ecological data: Model averaging and the problems of measurement error. Behavioral Ecology and Sociobiology, 65, 91–101. https://doi.org/10.1007/s00265-010-1045-6
-
(2011)
Behavioral Ecology and Sociobiology
, vol.65
, pp. 91-101
-
-
Freckleton, R.P.1
-
16
-
-
84939892061
-
Specification of random effects in multilevel models: A review
-
Grilli, L., & Rampichini, C. (2015). Specification of random effects in multilevel models: A review. Quality & Quantity, 49, 967–976. https://doi.org/10.1007/s11135-014-0060-5
-
(2015)
Quality & Quantity
, vol.49
, pp. 967-976
-
-
Grilli, L.1
Rampichini, C.2
-
17
-
-
80052832225
-
Avoiding bias in mixed model inference for fixed effects
-
Gurka, M. J., Edwards, L. J., & Muller, K. E. (2011). Avoiding bias in mixed model inference for fixed effects. Statistics in Medicine, 30, 2696–2707. https://doi.org/10.1002/sim.4293
-
(2011)
Statistics in Medicine
, vol.30
, pp. 2696-2707
-
-
Gurka, M.J.1
Edwards, L.J.2
Muller, K.E.3
-
18
-
-
33645062163
-
Extending the Box-Cox transformation to the linear mixed model
-
Gurka, M. J., Edwards, L. J., Muller, K. E., & Kupper, L. L. (2006). Extending the Box-Cox transformation to the linear mixed model. Journal of the Royal Statistical Society A, 169, 273–288. https://doi.org/10.1111/j.1467-985X.2005.00391.x
-
(2006)
Journal of the Royal Statistical Society A
, vol.169
, pp. 273-288
-
-
Gurka, M.J.1
Edwards, L.J.2
Muller, K.E.3
Kupper, L.L.4
-
19
-
-
85047520267
-
A brief introduction to mixed effects modelling and multi-model inference in ecology
-
Harrison, X. A., Donaldson, L., Correa-Cano, M. E., Evans, J., Fisher, D. N., Goodwin, C. E. D., … Inger, R. (2018). A brief introduction to mixed effects modelling and multi-model inference in ecology. PeerJ, 6, e4794. https://doi.org/10.7717/peerj.4794
-
(2018)
PeerJ
, vol.6
-
-
Harrison, X.A.1
Donaldson, L.2
Correa-Cano, M.E.3
Evans, J.4
Fisher, D.N.5
Goodwin, C.E.D.6
Inger, R.7
-
20
-
-
0000024102
-
Misspecified maximum likelihood estimates and generalised linear mixed models
-
Heagerty, P. J., & Kurland, B. F. (2001). Misspecified maximum likelihood estimates and generalised linear mixed models. Biometrika, 88, 973–985. https://doi.org/10.1093/biomet/88.4.973
-
(2001)
Biometrika
, vol.88
, pp. 973-985
-
-
Heagerty, P.J.1
Kurland, B.F.2
-
21
-
-
79952826573
-
Measurement and meaning in biology
-
Houle, D., Pelabon, C., Wagner, G. P., & Hansen, T. F. (2011). Measurement and meaning in biology. The Quarterly Review of Biology, 86, 3–34. https://doi.org/10.1086/658408
-
(2011)
The Quarterly Review of Biology
, vol.86
, pp. 3-34
-
-
Houle, D.1
Pelabon, C.2
Wagner, G.P.3
Hansen, T.F.4
-
22
-
-
34247368897
-
Robustness of the linear mixed model to misspecified error distribution
-
Jacqmin-Gadda, H., Sibillot, S., Proust, C., Molina, J. M., & Thiebaut, R. (2007). Robustness of the linear mixed model to misspecified error distribution. Computational Statistics & Data Analysis, 51, 5142–5154. https://doi.org/10.1016/j.csda.2006.05.021
-
(2007)
Computational Statistics & Data Analysis
, vol.51
, pp. 5142-5154
-
-
Jacqmin-Gadda, H.1
Sibillot, S.2
Proust, C.3
Molina, J.M.4
Thiebaut, R.5
-
23
-
-
0030880605
-
Small sample inference for fixed effects from restricted maximum likelihood
-
Kenward, M. G., & Roger, J. H. (1997). Small sample inference for fixed effects from restricted maximum likelihood. Biometrics, 53, 983–997. https://doi.org/10.2307/2533558
-
(1997)
Biometrics
, vol.53
, pp. 983-997
-
-
Kenward, M.G.1
Roger, J.H.2
-
24
-
-
61849100484
-
An improved approximation to the precision of fixed effects from restricted maximum likelihood
-
Kenward, M. G., & Roger, J. H. (2009). An improved approximation to the precision of fixed effects from restricted maximum likelihood. Computational Statistics & Data Analysis, 53, 2583–2595. https://doi.org/10.1016/j.csda.2008.12.013
-
(2009)
Computational Statistics & Data Analysis
, vol.53
, pp. 2583-2595
-
-
Kenward, M.G.1
Roger, J.H.2
-
25
-
-
14544302160
-
Conditional and marginal models: Another view
-
Lee, Y., & Nelder, J. A. (2004). Conditional and marginal models: Another view. Statistical Science, 19, 219–228. https://doi.org/10.1214/088342304000000305
-
(2004)
Statistical Science
, vol.19
, pp. 219-228
-
-
Lee, Y.1
Nelder, J.A.2
-
27
-
-
84893225043
-
HLMdiag: A suite of diagnostics for hierarchical linear models in R
-
Loy, A., & Hofmann, H. (2014). HLMdiag: A suite of diagnostics for hierarchical linear models in R. Journal of Statistical Software, 56, 1–18.
-
(2014)
Journal of Statistical Software
, vol.56
, pp. 1-18
-
-
Loy, A.1
Hofmann, H.2
-
28
-
-
1842783963
-
Robustness issues in multilevel regression analysis
-
Maas, C. J. M., & Hox, J. J. (2004). Robustness issues in multilevel regression analysis. Statistica Neerlandica, 58, 127–137. https://doi.org/10.1046/j.0039-0402.2003.00252.x
-
(2004)
Statistica Neerlandica
, vol.58
, pp. 127-137
-
-
Maas, C.J.M.1
Hox, J.J.2
-
29
-
-
82655175462
-
Misspecifying the shape of a random effects distribution: Why getting It wrong may not matter
-
McCulloch, C. E., & Neuhaus, J. M. (2011). Misspecifying the shape of a random effects distribution: Why getting It wrong may not matter. Statistical Science, 26, 388–402. https://doi.org/10.1214/11-STS361
-
(2011)
Statistical Science
, vol.26
, pp. 388-402
-
-
McCulloch, C.E.1
Neuhaus, J.M.2
-
30
-
-
85057715472
-
Multiple regression is not multiple regressions: The meaning of multiple regression and the non-problem of collinearity
-
Morrissey, M. B., & Ruxton, G. D. (2018). Multiple regression is not multiple regressions: The meaning of multiple regression and the non-problem of collinearity. Philosophy, Theory, and Practice in Biology, 10, 3. https://doi.org/10.3998/ptpbio.16039257.0010.003
-
(2018)
Philosophy, Theory, and Practice in Biology
, vol.10
, pp. 3
-
-
Morrissey, M.B.1
Ruxton, G.D.2
-
31
-
-
84995465975
-
Missing data: Mechanisms, methods, and messages
-
G. A. Fox, S. Negrete-Yankelevich, V. J. Sosa, (Eds.),, Oxford, UK, Oxford University Press
-
Nakagawa, S. (2015). Missing data: Mechanisms, methods, and messages. In G. A. Fox, S. Negrete-Yankelevich, & V. J. Sosa (Eds.), Ecological statistics: Contemporary theory and application (pp. 81–105). Oxford, UK: Oxford University Press.
-
(2015)
Ecological statistics: Contemporary theory and application
, pp. 81-105
-
-
Nakagawa, S.1
-
32
-
-
53649107862
-
Missing inaction: The dangers of ignoring missing data
-
Nakagawa, S., & Freckleton, R. P. (2008). Missing inaction: The dangers of ignoring missing data. Trends in Ecology & Evolution, 23, 592–596. https://doi.org/10.1016/j.tree.2008.06.014
-
(2008)
Trends in Ecology & Evolution
, vol.23
, pp. 592-596
-
-
Nakagawa, S.1
Freckleton, R.P.2
-
33
-
-
77954751665
-
Repeatability for Gaussian and non-Gaussian data: A practical guide for biologists
-
Nakagawa, S., & Schielzeth, H. (2010). Repeatability for Gaussian and non-Gaussian data: A practical guide for biologists. Biological Reviews, 85, 935–956. https://doi.org/10.1111/j.1469-185X.2010.00141.x
-
(2010)
Biological Reviews
, vol.85
, pp. 935-956
-
-
Nakagawa, S.1
Schielzeth, H.2
-
36
-
-
0001665813
-
Model robust confidence-intervals using maximum-likelihood estimators
-
Royall, R. M. (1986). Model robust confidence-intervals using maximum-likelihood estimators. International Statistical Review, 54, 221–226. https://doi.org/10.2307/1403146
-
(1986)
International Statistical Review
, vol.54
, pp. 221-226
-
-
Royall, R.M.1
-
37
-
-
0038107039
-
Interpreting statistical evidence by using imperfect models: Robust adjusted likelihood functions
-
Royall, R., & Tsou, T. S. (2003). Interpreting statistical evidence by using imperfect models: Robust adjusted likelihood functions. Journal of the Royal Statistical Society B, 65, 391–404. https://doi.org/10.1111/1467-9868.00392
-
(2003)
Journal of the Royal Statistical Society B
, vol.65
, pp. 391-404
-
-
Royall, R.1
Tsou, T.S.2
-
38
-
-
0000439370
-
Bayesianly justifiable and relevant frequency calculations for the applied statistician
-
Rubin, D. B. (1984). Bayesianly justifiable and relevant frequency calculations for the applied statistician. The Annals of Statistics, 12, 1151–1172. https://doi.org/10.1214/aos/1176346785
-
(1984)
The Annals of Statistics
, vol.12
, pp. 1151-1172
-
-
Rubin, D.B.1
-
39
-
-
38049181505
-
Residual analysis for linear mixed models
-
Santos Nobre, J., & Singer, J. D. (2007). Residual analysis for linear mixed models. Biometrical Journal, 49, 863–875. https://doi.org/10.1002/bimj.200610341
-
(2007)
Biometrical Journal
, vol.49
, pp. 863-875
-
-
Santos Nobre, J.1
Singer, J.D.2
-
40
-
-
85088013762
-
Code for: Robustness of linear mixed-effects models to violations of distributional assumptions
-
Schielzeth, H. (2020). Code for: Robustness of linear mixed-effects models to violations of distributional assumptions. Zenodo, https://doi.org/10.5281/zenodo.3877130
-
(2020)
Zenodo
-
-
Schielzeth, H.1
-
41
-
-
64949134162
-
Conclusions beyond support: Overconfident estimates in mixed models
-
Schielzeth, H., & Forstmeier, W. (2009). Conclusions beyond support: Overconfident estimates in mixed models. Behavioral Ecology, 20, 416–420. https://doi.org/10.1093/beheco/arn145
-
(2009)
Behavioral Ecology
, vol.20
, pp. 416-420
-
-
Schielzeth, H.1
Forstmeier, W.2
-
42
-
-
0037290204
-
Posterior predictive model checking in hierarchical models
-
Sinharay, S., & Stern, H. S. (2003). Posterior predictive model checking in hierarchical models. Journal of Statistical Planning and Inference, 111, 209–221. https://doi.org/10.1016/S0378-3758(02)00303-8
-
(2003)
Journal of Statistical Planning and Inference
, vol.111
, pp. 209-221
-
-
Sinharay, S.1
Stern, H.S.2
-
44
-
-
21844510172
-
A stochastic model for analysis of longitudinal AIDS data
-
Taylor, J. M. G., Cumberland, W. G., & Sy, J. P. (1994). A stochastic model for analysis of longitudinal AIDS data. Journal of the American Statistical Association, 89, 727–736. https://doi.org/10.1080/01621459.1994.10476806
-
(1994)
Journal of the American Statistical Association
, vol.89
, pp. 727-736
-
-
Taylor, J.M.G.1
Cumberland, W.G.2
Sy, J.P.3
-
45
-
-
0023868890
-
A method for computing profile-likelihood-based confidence intervals
-
Venzon, D. J., & Moolgavkar, S. H. (1988). A method for computing profile-likelihood-based confidence intervals. Journal of the Royal Statistical Society Series C, 37, 87–94. https://doi.org/10.2307/2347496
-
(1988)
Journal of the Royal Statistical Society Series C
, vol.37
, pp. 87-94
-
-
Venzon, D.J.1
Moolgavkar, S.H.2
-
46
-
-
0000569928
-
A linear mixed-effects model with heterogeneity in the random-effects population
-
Verbeke, G., & Lesaffre, E. (1996). A linear mixed-effects model with heterogeneity in the random-effects population. Journal of the American Statistical Association, 91, 217–221. https://doi.org/10.1080/01621459.1996.10476679
-
(1996)
Journal of the American Statistical Association
, vol.91
, pp. 217-221
-
-
Verbeke, G.1
Lesaffre, E.2
-
47
-
-
0031555662
-
The effect of misspecifying the random-effects distribution in linear mixed models for longitudinal data
-
Verbeke, G., & Lesaffre, E. (1997). The effect of misspecifying the random-effects distribution in linear mixed models for longitudinal data. Computational Statistics & Data Analysis, 23, 541–556. https://doi.org/10.1016/S0167-9473(96)00047-3
-
(1997)
Computational Statistics & Data Analysis
, vol.23
, pp. 541-556
-
-
Verbeke, G.1
Lesaffre, E.2
-
48
-
-
84907811279
-
Robustness of the linear mixed effects model to error distribution assumptions and the consequences for genome-wide association studies
-
Warrington, N. M., Tilling, K., Howe, L. D., Paternoster, L., Pennell, C. E., Wu, Y. Y., & Briollais, L. (2014). Robustness of the linear mixed effects model to error distribution assumptions and the consequences for genome-wide association studies. Statistical Applications in Genetics and Molecular Biology, 13, 567–587. https://doi.org/10.1515/sagmb-2013-0066
-
(2014)
Statistical Applications in Genetics and Molecular Biology
, vol.13
, pp. 567-587
-
-
Warrington, N.M.1
Tilling, K.2
Howe, L.D.3
Paternoster, L.4
Pennell, C.E.5
Wu, Y.Y.6
Briollais, L.7
-
49
-
-
84937162204
-
The biology hidden inside residual within-individual phenotypic variation
-
Westneat, D. F., Wright, J., & Dingemanse, N. J. (2015). The biology hidden inside residual within-individual phenotypic variation. Biological Reviews, 90, 729–743. https://doi.org/10.1111/brv.12131
-
(2015)
Biological Reviews
, vol.90
, pp. 729-743
-
-
Westneat, D.F.1
Wright, J.2
Dingemanse, N.J.3
-
51
-
-
77957104527
-
A protocol for data exploration to avoid common statistical problems
-
Zuur, A. F., Ieno, E. N., & Elphick, C. S. (2010). A protocol for data exploration to avoid common statistical problems. Methods in Ecology and Evolution, 1, 3–14. https://doi.org/10.1111/j.2041-210X.2009.00001.x
-
(2010)
Methods in Ecology and Evolution
, vol.1
, pp. 3-14
-
-
Zuur, A.F.1
Ieno, E.N.2
Elphick, C.S.3
-
52
-
-
59349116454
-
-
London, UK, Springer
-
Zuur, A. F., Ieno, E. N., Walker, N. J., Saveliev, A. A., & Smith, G. M. (2009). Mixed effects models and extensions in ecology with R. London, UK: Springer.
-
(2009)
Mixed effects models and extensions in ecology with R
-
-
Zuur, A.F.1
Ieno, E.N.2
Walker, N.J.3
Saveliev, A.A.4
Smith, G.M.5
|