메뉴 건너뛰기




Volumn 395, Issue 10224, 2020, Pages 565-574

Genomic characterisation and epidemiology of 2019 novel coronavirus: implications for virus origins and receptor binding

(35)  Lu, Roujian a   Zhao, Xiang a   Li, Juan b   Niu, Peihua a   Yang, Bo a   Wu, Honglong c   Wang, Wenling a   Song, Hao d   Huang, Baoying a   Zhu, Na a   Bi, Yuhai d,e   Ma, Xuejun a   Zhan, Faxian a   Wang, Liang d,e   Hu, Tao b   Zhou, Hong b   Hu, Zhenhong f   Zhou, Weimin a   Zhao, Li a   Chen, Jing g   more..


Author keywords

[No Author keywords available]

Indexed keywords

ANGIOTENSIN CONVERTING ENZYME 2; COMPLEMENTARY DNA; CONTIG; COVID-19; SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS 2; VIRUS DNA; VIRUS RECEPTOR;

EID: 85078741591     PISSN: 01406736     EISSN: 1474547X     Source Type: Journal    
DOI: 10.1016/S0140-6736(20)30251-8     Document Type: Article
Times cited : (9081)

References (37)
  • 1
    • 84961285054 scopus 로고    scopus 로고
    • Epidemiology, genetic recombination, and pathogenesis of coronaviruses
    • Su, S, Wong, G, Shi, W, et al. Epidemiology, genetic recombination, and pathogenesis of coronaviruses. Trends Microbiol 24 (2016), 490–502.
    • (2016) Trends Microbiol , vol.24 , pp. 490-502
    • Su, S.1    Wong, G.2    Shi, W.3
  • 2
    • 34147160583 scopus 로고    scopus 로고
    • Coronavirus avian infectious bronchitis virus
    • Cavanagh, D, Coronavirus avian infectious bronchitis virus. Vet Res 38 (2007), 281–297.
    • (2007) Vet Res , vol.38 , pp. 281-297
    • Cavanagh, D.1
  • 3
    • 0141683646 scopus 로고    scopus 로고
    • Pathogenicity of turkey coronavirus in turkeys and chickens
    • Ismail, MM, Tang, AY, Saif, YM, Pathogenicity of turkey coronavirus in turkeys and chickens. Avian Dis 47 (2003), 515–522.
    • (2003) Avian Dis , vol.47 , pp. 515-522
    • Ismail, M.M.1    Tang, A.Y.2    Saif, Y.M.3
  • 4
    • 85045258243 scopus 로고    scopus 로고
    • Fatal swine acute diarrhoea syndrome caused by an HKU2-related coronavirus of bat origin
    • Zhou, P, Fan, H, Lan, T, et al. Fatal swine acute diarrhoea syndrome caused by an HKU2-related coronavirus of bat origin. Nature 556 (2018), 255–258.
    • (2018) Nature , vol.556 , pp. 255-258
    • Zhou, P.1    Fan, H.2    Lan, T.3
  • 5
    • 10944238037 scopus 로고    scopus 로고
    • Severe acute respiratory syndrome
    • Peiris, JS, Guan, Y, Yuen, KY, Severe acute respiratory syndrome. Nat Med 10:suppl 12 (2004), S88–S97.
    • (2004) Nat Med , vol.10 , pp. S88-S97
    • Peiris, J.S.1    Guan, Y.2    Yuen, K.Y.3
  • 6
    • 0345732174 scopus 로고    scopus 로고
    • SARS: epidemiology
    • Chan-Yeung, M, Xu, RH, SARS: epidemiology. Respirology 8:suppl (2003), S9–S14.
    • (2003) Respirology , vol.8 , pp. S9-S14
    • Chan-Yeung, M.1    Xu, R.H.2
  • 8
    • 84982236989 scopus 로고    scopus 로고
    • A dynamic compartmental model for the Middle East respiratory syndrome outbreak in the Republic of Korea: a retrospective analysis on control interventions and superspreading events
    • Lee, J, Chowell, G, Jung, E, A dynamic compartmental model for the Middle East respiratory syndrome outbreak in the Republic of Korea: a retrospective analysis on control interventions and superspreading events. J Theor Biol 408 (2016), 118–126.
    • (2016) J Theor Biol , vol.408 , pp. 118-126
    • Lee, J.1    Chowell, G.2    Jung, E.3
  • 9
    • 85023597584 scopus 로고    scopus 로고
    • The clinical and virological features of the first imported case causing MERS-CoV outbreak in South Korea, 2015
    • Lee, JY, Kim, YJ, Chung, EH, et al. The clinical and virological features of the first imported case causing MERS-CoV outbreak in South Korea, 2015. BMC Infect Dis, 17, 2017, 498.
    • (2017) BMC Infect Dis , vol.17 , pp. 498
    • Lee, J.Y.1    Kim, Y.J.2    Chung, E.H.3
  • 10
    • 85102023877 scopus 로고    scopus 로고
    • A novel coronavirus genome identified in a cluster of pneumonia cases—Wuhan, China 2019–2020
    • Tan, W, Zhao, X, Ma, X, et al. A novel coronavirus genome identified in a cluster of pneumonia cases—Wuhan, China 2019–2020. China CDC Weekly 2 (2020), 61–62.
    • (2020) China CDC Weekly , vol.2 , pp. 61-62
    • Tan, W.1    Zhao, X.2    Ma, X.3
  • 11
    • 85080034896 scopus 로고    scopus 로고
    • A novel coronavirus from patients with pneumonia in China, 2019
    • published online Jan 24.
    • Zhu, N, Zhang, D, Wang, W, et al. A novel coronavirus from patients with pneumonia in China, 2019. N Engl J Med, 2020 published online Jan 24. DOI:10.1056/NEJMoa2001017.
    • (2020) N Engl J Med
    • Zhu, N.1    Zhang, D.2    Wang, W.3
  • 12
    • 85078241697 scopus 로고    scopus 로고
    • A familial cluster of pneumonia associated with the 2019 novel coronavirus indicating person-to-person transmission: a study of a family cluster
    • published online Jan 24
    • Chan, JFW, Yuan, S, Kok, KH, et al. A familial cluster of pneumonia associated with the 2019 novel coronavirus indicating person-to-person transmission: a study of a family cluster. Lancet, 2020 published online Jan 24 https://doi.org/10.1016/S0140-6736(20)30154-9.
    • (2020) Lancet
    • Chan, J.F.W.1    Yuan, S.2    Kok, K.H.3
  • 13
    • 85078262578 scopus 로고    scopus 로고
    • Clinical features of patients infected with 2019 novel coronavirus in Wuhan, China
    • published online Jan 24
    • Huang, C, Wang, Y, Li, X, et al. Clinical features of patients infected with 2019 novel coronavirus in Wuhan, China. Lancet, 2020 published online Jan 24 https://doi.org/10.1016/S0140-6736(20)30183-5.
    • (2020) Lancet
    • Huang, C.1    Wang, Y.2    Li, X.3
  • 14
    • 84955614794 scopus 로고    scopus 로고
    • Two-tube multiplex real-time reverse transcription PCR to detect six human coronaviruses
    • Niu, P, Shen, J, Zhu, N, Lu, R, Tan, W, Two-tube multiplex real-time reverse transcription PCR to detect six human coronaviruses. Virol Sin 31 (2016), 85–88.
    • (2016) Virol Sin , vol.31 , pp. 85-88
    • Niu, P.1    Shen, J.2    Zhu, N.3    Lu, R.4    Tan, W.5
  • 15
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • Li, H, Durbin, R, Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25 (2009), 1754–1760.
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 16
    • 84855167751 scopus 로고    scopus 로고
    • RAPSearch2: a fast and memory-efficient protein similarity search tool for next-generation sequencing data
    • Zhao, Y, Tang, H, Ye, Y, RAPSearch2: a fast and memory-efficient protein similarity search tool for next-generation sequencing data. Bioinformatics 28 (2012), 125–126.
    • (2012) Bioinformatics , vol.28 , pp. 125-126
    • Zhao, Y.1    Tang, H.2    Ye, Y.3
  • 18
    • 84955343203 scopus 로고    scopus 로고
    • Human infection with a novel, highly pathogenic avian influenza A (H5N6) virus: virological and clinical findings
    • Pan, M, Gao, R, Lv, Q, et al. Human infection with a novel, highly pathogenic avian influenza A (H5N6) virus: virological and clinical findings. J Infect 72 (2016), 52–59.
    • (2016) J Infect , vol.72 , pp. 52-59
    • Pan, M.1    Gao, R.2    Lv, Q.3
  • 19
    • 85016162260 scopus 로고    scopus 로고
    • CDD/SPARCLE: functional classification of proteins via subfamily domain architectures
    • Marchler-Bauer, A, Bo, Y, Han, L, et al. CDD/SPARCLE: functional classification of proteins via subfamily domain architectures. Nucleic Acids Res 45 (2017), D200–D203.
    • (2017) Nucleic Acids Res , vol.45 , pp. D200-D203
    • Marchler-Bauer, A.1    Bo, Y.2    Han, L.3
  • 20
    • 0032889281 scopus 로고    scopus 로고
    • Full-length human immunodeficiency virus type 1 genomes from subtype C-infected seroconverters in India, with evidence of intersubtype recombination
    • Lole, KS, Bollinger, RC, Paranjape, RS, et al. Full-length human immunodeficiency virus type 1 genomes from subtype C-infected seroconverters in India, with evidence of intersubtype recombination. J Virol 73 (1999), 152–160.
    • (1999) J Virol , vol.73 , pp. 152-160
    • Lole, K.S.1    Bollinger, R.C.2    Paranjape, R.S.3
  • 21
    • 85055056401 scopus 로고    scopus 로고
    • Parallelization of MAFFT for large-scale multiple sequence alignments
    • Nakamura, T, Yamada, KD, Tomii, K, Katoh, K, Parallelization of MAFFT for large-scale multiple sequence alignments. Bioinformatics 34 (2018), 2490–2492.
    • (2018) Bioinformatics , vol.34 , pp. 2490-2492
    • Nakamura, T.1    Yamada, K.D.2    Tomii, K.3    Katoh, K.4
  • 22
    • 84899553363 scopus 로고    scopus 로고
    • RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
    • Stamatakis, A, RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics 30 (2014), 1312–1313.
    • (2014) Bioinformatics , vol.30 , pp. 1312-1313
    • Stamatakis, A.1
  • 23
    • 85053273048 scopus 로고    scopus 로고
    • Genomic characterization and infectivity of a novel SARS-like coronavirus in Chinese bats
    • Hu, D, Zhu, C, Ai, L, et al. Genomic characterization and infectivity of a novel SARS-like coronavirus in Chinese bats. Emerg Microbes Infect, 7, 2018, 154.
    • (2018) Emerg Microbes Infect , vol.7 , pp. 154
    • Hu, D.1    Zhu, C.2    Ai, L.3
  • 24
    • 84992052428 scopus 로고    scopus 로고
    • Structure, function, and evolution of coronavirus spike proteins
    • Li, F, Structure, function, and evolution of coronavirus spike proteins. Annu Rev Virol 3 (2016), 237–261.
    • (2016) Annu Rev Virol , vol.3 , pp. 237-261
    • Li, F.1
  • 25
    • 84939255224 scopus 로고    scopus 로고
    • Bat-to-human: spike features determining ‘host jump’ of coronaviruses SARS-CoV, MERS-CoV, and beyond
    • Lu, G, Wang, Q, Gao, GF, Bat-to-human: spike features determining ‘host jump’ of coronaviruses SARS-CoV, MERS-CoV, and beyond. Trends Microbiol 23 (2015), 468–478.
    • (2015) Trends Microbiol , vol.23 , pp. 468-478
    • Lu, G.1    Wang, Q.2    Gao, G.F.3
  • 26
    • 84982176821 scopus 로고    scopus 로고
    • MERS-CoV spike protein: targets for vaccines and therapeutics
    • Wang, Q, Wong, G, Lu, G, Yan, J, Gao, GF, MERS-CoV spike protein: targets for vaccines and therapeutics. Antiviral Res 133 (2016), 165–177.
    • (2016) Antiviral Res , vol.133 , pp. 165-177
    • Wang, Q.1    Wong, G.2    Lu, G.3    Yan, J.4    Gao, G.F.5
  • 27
    • 5144234050 scopus 로고    scopus 로고
    • Receptor-binding domain of SARS-CoV spike protein induces highly potent neutralizing antibodies: implication for developing subunit vaccine
    • He, Y, Zhou, Y, Liu, S, et al. Receptor-binding domain of SARS-CoV spike protein induces highly potent neutralizing antibodies: implication for developing subunit vaccine. Biochem Biophys Res Commun 324 (2004), 773–781.
    • (2004) Biochem Biophys Res Commun , vol.324 , pp. 773-781
    • He, Y.1    Zhou, Y.2    Liu, S.3
  • 28
    • 84857809414 scopus 로고    scopus 로고
    • Evidence for a common evolutionary origin of coronavirus spike protein receptor-binding subunits
    • Li, F, Evidence for a common evolutionary origin of coronavirus spike protein receptor-binding subunits. J Virol 86 (2012), 2856–2858.
    • (2012) J Virol , vol.86 , pp. 2856-2858
    • Li, F.1
  • 29
    • 24944498409 scopus 로고    scopus 로고
    • Structure of SARS coronavirus spike receptor-binding domain complexed with receptor
    • Li, F, Li, W, Farzan, M, Harrison, SC, Structure of SARS coronavirus spike receptor-binding domain complexed with receptor. Science 309 (2005), 1864–1868.
    • (2005) Science , vol.309 , pp. 1864-1868
    • Li, F.1    Li, W.2    Farzan, M.3    Harrison, S.C.4
  • 30
    • 84881479703 scopus 로고    scopus 로고
    • Molecular basis of binding between novel human coronavirus MERS-CoV and its receptor CD26
    • Lu, G, Hu, Y, Wang, Q, et al. Molecular basis of binding between novel human coronavirus MERS-CoV and its receptor CD26. Nature 500 (2013), 227–231.
    • (2013) Nature , vol.500 , pp. 227-231
    • Lu, G.1    Hu, Y.2    Wang, Q.3
  • 31
    • 84881190964 scopus 로고    scopus 로고
    • Structure of MERS-CoV spike receptor-binding domain complexed with human receptor DPP4
    • Wang, N, Shi, X, Jiang, L, et al. Structure of MERS-CoV spike receptor-binding domain complexed with human receptor DPP4. Cell Res 23 (2013), 986–993.
    • (2013) Cell Res , vol.23 , pp. 986-993
    • Wang, N.1    Shi, X.2    Jiang, L.3
  • 32
    • 84907681989 scopus 로고    scopus 로고
    • Bat origins of MERS-CoV supported by bat coronavirus HKU4 usage of human receptor CD26
    • Wang, Q, Qi, J, Yuan, Y, et al. Bat origins of MERS-CoV supported by bat coronavirus HKU4 usage of human receptor CD26. Cell Host Microbe 16 (2014), 328–337.
    • (2014) Cell Host Microbe , vol.16 , pp. 328-337
    • Wang, Q.1    Qi, J.2    Yuan, Y.3
  • 33
    • 85050235281 scopus 로고    scopus 로고
    • SWISS-MODEL: homology modelling of protein structures and complexes
    • Waterhouse, A, Bertoni, M, Bienert, S, et al. SWISS-MODEL: homology modelling of protein structures and complexes. Nucleic Acids Res 46 (2018), W296–W303.
    • (2018) Nucleic Acids Res , vol.46 , pp. W296-W303
    • Waterhouse, A.1    Bertoni, M.2    Bienert, S.3
  • 34
    • 33744910870 scopus 로고    scopus 로고
    • Structure of severe acute respiratory syndrome coronavirus receptor-binding domain complexed with neutralizing antibody
    • Prabakaran, P, Gan, J, Feng, Y, et al. Structure of severe acute respiratory syndrome coronavirus receptor-binding domain complexed with neutralizing antibody. J Biol Chem 281 (2006), 15829–15836.
    • (2006) J Biol Chem , vol.281 , pp. 15829-15836
    • Prabakaran, P.1    Gan, J.2    Feng, Y.3
  • 35
    • 0141889936 scopus 로고    scopus 로고
    • Isolation and characterization of viruses related to the SARS coronavirus from animals in southern China
    • Guan, Y, Zheng, BJ, He, YQ, et al. Isolation and characterization of viruses related to the SARS coronavirus from animals in southern China. Science 302 (2003), 276–278.
    • (2003) Science , vol.302 , pp. 276-278
    • Guan, Y.1    Zheng, B.J.2    He, Y.Q.3
  • 36
    • 84899641194 scopus 로고    scopus 로고
    • Middle East respiratory syndrome coronavirus infection in dromedary camels in Saudi Arabia
    • Alagaili, AN, Briese, T, Mishra, N, et al. Middle East respiratory syndrome coronavirus infection in dromedary camels in Saudi Arabia. mBio 5 (2014), e00884–e00914.
    • (2014) mBio , vol.5 , pp. e00884-e00914
    • Alagaili, A.N.1    Briese, T.2    Mishra, N.3
  • 37
    • 85078655138 scopus 로고    scopus 로고
    • Discovery of a novel coronavirus associated with the recent pneumonia outbreak in humans and its potential bat origin
    • published online Jan 23.
    • Zhou, P, Yang, X-L, Wang, X-G, et al. Discovery of a novel coronavirus associated with the recent pneumonia outbreak in humans and its potential bat origin. bioRxiv, 2020 published online Jan 23. DOI:10.1101/2020.01.22.914952.
    • (2020) bioRxiv
    • Zhou, P.1    Yang, X.-L.2    Wang, X.-G.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.