메뉴 건너뛰기




Volumn 202, Issue 12, 2019, Pages 3370-3380

Influenza A virus infection induces viral and cellular defective ribosomal products encoded by alternative reading frames

Author keywords

[No Author keywords available]

Indexed keywords

EPITOPE; GAMMA INTERFERON; LYSOSOME ASSOCIATED MEMBRANE PROTEIN 1; MESSENGER RNA; NONSTRUCTURAL PROTEIN 1; TUMOR NECROSIS FACTOR; INS1 PROTEIN, INFLUENZA VIRUS; VIRAL PROTEIN;

EID: 85067219326     PISSN: 00221767     EISSN: 15506606     Source Type: Journal    
DOI: 10.4049/jimmunol.1900070     Document Type: Article
Times cited : (26)

References (58)
  • 1
    • 0026586396 scopus 로고
    • RMA/S cells present endogenously synthesized cytosolic proteins to class I-restricted cytotoxic T lymphocytes
    • Esquivel, F., J. Yewdell, and J. Bennink. 1992. RMA/S cells present endogenously synthesized cytosolic proteins to class I-restricted cytotoxic T lymphocytes. J. Exp. Med. 175: 163-168.
    • (1992) J. Exp. Med. , vol.175 , pp. 163-168
    • Esquivel, F.1    Yewdell, J.2    Bennink, J.3
  • 2
    • 84955660741 scopus 로고    scopus 로고
    • Quantifying epitope presentation using mass spectrometry
    • Croft, N. P., A. W. Purcell, and D. C. Tscharke. 2015. Quantifying epitope presentation using mass spectrometry. Mol. Immunol. 68(2, Pt A): 77-80.
    • (2015) Mol. Immunol. , vol.68 , Issue.2 , pp. 77-80
    • Croft, N.P.1    Purcell, A.W.2    Tscharke, D.C.3
  • 3
    • 84899883247 scopus 로고    scopus 로고
    • Translating drips: MHC class I immunosurveillance of pathogens and tumors
    • Antón, L. C., and J. W. Yewdell. 2014. Translating DRiPs: MHC class I immunosurveillance of pathogens and tumors. J. Leukoc. Biol. 95: 551-562.
    • (2014) J. Leukoc. Biol. , vol.95 , pp. 551-562
    • Antón, L.C.1    Yewdell, J.W.2
  • 4
    • 33646867918 scopus 로고    scopus 로고
    • Epitopes derived by incidental translational frameshifting give rise to a protective CTL response
    • Zook, M. B., M. T. Howard, G. Sinnathamby, J. F. Atkins, and L. C. Eisenlohr. 2006. Epitopes derived by incidental translational frameshifting give rise to a protective CTL response. J. Immunol. 176: 6928-6934.
    • (2006) J. Immunol. , vol.176 , pp. 6928-6934
    • Zook, M.B.1    Howard, M.T.2    Sinnathamby, G.3    Atkins, J.F.4    Eisenlohr, L.C.5
  • 5
    • 34250898483 scopus 로고    scopus 로고
    • Viral alteration of cellular translational machinery increases defective ribosomal products
    • Berglund, P., D. Finzi, J. R. Bennink, and J. W. Yewdell. 2007. Viral alteration of cellular translational machinery increases defective ribosomal products. J. Virol. 81: 7220-7229.
    • (2007) J. Virol. , vol.81 , pp. 7220-7229
    • Berglund, P.1    Finzi, D.2    Bennink, J.R.3    Yewdell, J.W.4
  • 6
    • 0030763646 scopus 로고    scopus 로고
    • Initiation codon scanthrough versus termination codon readthrough demonstrates strong potential for major histocompatibility complex class I-restricted cryptic epitope expression
    • Bullock, T. N., A. E. Patterson, L. L. Franlin, E. Notidis, and L. C. Eisenlohr. 1997. Initiation codon scanthrough versus termination codon readthrough demonstrates strong potential for major histocompatibility complex class I-restricted cryptic epitope expression. J. Exp. Med. 186: 1051-1058.
    • (1997) J. Exp. Med. , vol.186 , pp. 1051-1058
    • Bullock, T.N.1    Patterson, A.E.2    Franlin, L.L.3    Notidis, E.4    Eisenlohr, L.C.5
  • 7
    • 0029854328 scopus 로고    scopus 로고
    • Ribosomal scanning past the primary initiation codon as a mechanism for expression of CTL epitopes encoded in alternative reading frames
    • Bullock, T. N. J., and L. C. Eisenlohr. 1996. Ribosomal scanning past the primary initiation codon as a mechanism for expression of CTL epitopes encoded in alternative reading frames. J. Exp. Med. 184: 1319-1329.
    • (1996) J. Exp. Med. , vol.184 , pp. 1319-1329
    • Bullock, T.N.J.1    Eisenlohr, L.C.2
  • 13
    • 34249021370 scopus 로고    scopus 로고
    • Peptides encoded by short ORFs control development and define a new eukaryotic gene family
    • Galindo, M. I., J. I. Pueyo, S. Fouix, S. A. Bishop, and J. P. Couso. 2007. Peptides encoded by short ORFs control development and define a new eukaryotic gene family. PLoS Biol. 5: e106.
    • (2007) PLoS Biol , vol.5
    • Galindo, M.I.1    Pueyo, J.I.2    Fouix, S.3    Bishop, S.A.4    Couso, J.P.5
  • 14
    • 67749133883 scopus 로고    scopus 로고
    • A complicated message: Identification of a novel PB1-related protein translated from influenza A virus segment 2 mRNA
    • Wise, H. M., A. Foeglein, J. Sun, R. M. Dalton, S. Patel, W. Howard, E. C. Anderson, W. S. Barclay, and P. Digard. 2009. A complicated message: identification of a novel PB1-related protein translated from influenza A virus segment 2 mRNA. J. Virol. 83: 8021-8031.
    • (2009) J. Virol. , vol.83 , pp. 8021-8031
    • Wise, H.M.1    Foeglein, A.2    Sun, J.3    Dalton, R.M.4    Patel, S.5    Howard, W.6    Anderson, E.C.7    Barclay, W.S.8    Digard, P.9
  • 16
    • 84874676641 scopus 로고    scopus 로고
    • Identification of novel influenza A virus proteins translated from PA mRNA
    • Muramoto, Y., T. Noda, E. Kawakami, R. Akkina, and Y. Kawaoka. 2013. Identification of novel influenza A virus proteins translated from PA mRNA. J. Virol. 87: 2455-2462.
    • (2013) J. Virol. , vol.87 , pp. 2455-2462
    • Muramoto, Y.1    Noda, T.2    Kawakami, E.3    Akkina, R.4    Kawaoka, Y.5
  • 18
    • 0031568653 scopus 로고    scopus 로고
    • MHC affinity, peptide liberation, T cell repertoire, and immunodominance all contribute to the paucity of MHC class I-restricted peptides recognized by antiviral CTL
    • Deng, Y., J. W. Yewdell, L. C. Eisenlohr, and J. R. Bennink. 1997. MHC affinity, peptide liberation, T cell repertoire, and immunodominance all contribute to the paucity of MHC class I-restricted peptides recognized by antiviral CTL. J. Immunol. 158: 1507-1515.
    • (1997) J. Immunol. , vol.158 , pp. 1507-1515
    • Deng, Y.1    Yewdell, J.W.2    Eisenlohr, L.C.3    Bennink, J.R.4
  • 19
    • 84879663141 scopus 로고    scopus 로고
    • Mixed proteasomes function to increase viral peptide diversity and broaden antiviral CD8+ T cell responses
    • Zanker, D., J. Waithman, J. W. Yewdell, and W. Chen. 2013. Mixed proteasomes function to increase viral peptide diversity and broaden antiviral CD8+ T cell responses. J. Immunol. 191: 52-59.
    • (2013) J. Immunol. , vol.191 , pp. 52-59
    • Zanker, D.1    Waithman, J.2    Yewdell, J.W.3    Chen, W.4
  • 20
    • 6344284232 scopus 로고    scopus 로고
    • Reversal in the immunodominance hierarchy in secondary CD8+ T cell responses to influenza A virus: Roles for cross-presentation and lysis-independent immunodomination
    • Chen, W., K. Pang, K. A. Masterman, G. Kennedy, S. Basta, N. Dimopoulos, F. Hornung, M. Smyth, J. R. Bennink, and J. W. Yewdell. 2004. Reversal in the immunodominance hierarchy in secondary CD8+ T cell responses to influenza A virus: roles for cross-presentation and lysis-independent immunodomination. J. Immunol. 173: 5021-5027.
    • (2004) J. Immunol. , vol.173 , pp. 5021-5027
    • Chen, W.1    Pang, K.2    Masterman, K.A.3    Kennedy, G.4    Basta, S.5    Dimopoulos, N.6    Hornung, F.7    Smyth, M.8    Bennink, J.R.9    Yewdell, J.W.10
  • 21
    • 0036785574 scopus 로고    scopus 로고
    • Mice deficient in perforin, CD4+ T cells, or CD28-mediated signaling maintain the typical immunodominance hierarchies of CD8+ T-cell responses to influenza virus
    • Chen, W., J. R. Bennink, P. A. Morton, and J. W. Yewdell. 2002. Mice deficient in perforin, CD4+ T cells, or CD28-mediated signaling maintain the typical immunodominance hierarchies of CD8+ T-cell responses to influenza virus. J. Virol. 76: 10332-10337.
    • (2002) J. Virol. , vol.76 , pp. 10332-10337
    • Chen, W.1    Bennink, J.R.2    Morton, P.A.3    Yewdell, J.W.4
  • 22
    • 0002866386 scopus 로고    scopus 로고
    • Dissecting the multifactorial causes of immunodominance in class I-restricted T cell responses to viruses
    • Chen, W., L. C. Antón, J. R. Bennink, and J. W. Yewdell. 2000. Dissecting the multifactorial causes of immunodominance in class I-restricted T cell responses to viruses. Immunity 12: 83-93.
    • (2000) Immunity , vol.12 , pp. 83-93
    • Chen, W.1    Antón, L.C.2    Bennink, J.R.3    Yewdell, J.W.4
  • 24
  • 25
    • 0033532627 scopus 로고    scopus 로고
    • Modification of cysteine residues in vitro and in vivo affects the immunogenicity and antigenicity of major histocompatibility complex class I-restricted viral determinants
    • Chen, W., J. W. Yewdell, R. L. Levine, and J. R. Bennink. 1999. Modification of cysteine residues in vitro and in vivo affects the immunogenicity and antigenicity of major histocompatibility complex class I-restricted viral determinants. J. Exp. Med. 189: 1757-1764.
    • (1999) J. Exp. Med. , vol.189 , pp. 1757-1764
    • Chen, W.1    Yewdell, J.W.2    Levine, R.L.3    Bennink, J.R.4
  • 26
    • 33751584435 scopus 로고    scopus 로고
    • Immunoproteasome subunit deficiencies impact differentially on two immunodominant influenza virus-specific CD8+ T cell responses
    • Pang, K. C., M. T. Sanders, J. J. Monaco, P. C. Doherty, S. J. Turner, and W. Chen. 2006. Immunoproteasome subunit deficiencies impact differentially on two immunodominant influenza virus-specific CD8+ T cell responses. J. Immunol. 177: 7680-7688.
    • (2006) J. Immunol. , vol.177 , pp. 7680-7688
    • Pang, K.C.1    Sanders, M.T.2    Monaco, J.J.3    Doherty, P.C.4    Turner, S.J.5    Chen, W.6
  • 27
    • 84926519013 scopus 로고    scopus 로고
    • Hisat: A fast spliced aligner with low memory requirements
    • Kim, D., B. Langmead, and S. L. Salzberg. 2015. HISAT: a fast spliced aligner with low memory requirements. Nat. Methods 12: 357-360.
    • (2015) Nat. Methods , vol.12 , pp. 357-360
    • Kim, D.1    Langmead, B.2    Salzberg, S.L.3
  • 28
    • 84924629414 scopus 로고    scopus 로고
    • Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
    • Love, M. I., W. Huber, and S. Anders. 2014. Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2. Genome Biol. 15: 550.
    • (2014) Genome Biol , vol.15 , pp. 550
    • Love, M.I.1    Huber, W.2    Anders, S.3
  • 29
    • 0024234823 scopus 로고
    • Murine cytotoxic T lymphocyte recognition of individual influenza virus proteins. High frequency of nonresponder MHC class I alleles
    • Bennink, J. R., and J. W. Yewdell. 1988. Murine cytotoxic T lymphocyte recognition of individual influenza virus proteins. High frequency of nonresponder MHC class I alleles. J. Exp. Med. 168: 1935-1939.
    • (1988) J. Exp. Med. , vol.168 , pp. 1935-1939
    • Bennink, J.R.1    Yewdell, J.W.2
  • 30
    • 0023757414 scopus 로고
    • A region of the influenza A/NT/60/68 PB2 protein containing an antigenic determinant recognized by murine H-2Dd restricted cytotoxic T lymphocytes
    • Reay, P. A., I. M. Jones, and G. G. Brownlee. 1988. A region of the influenza A/NT/60/68 PB2 protein containing an antigenic determinant recognized by murine H-2Dd restricted cytotoxic T lymphocytes. Virology 167: 261-268.
    • (1988) Virology , vol.167 , pp. 261-268
    • Reay, P.A.1    Jones, I.M.2    Brownlee, G.G.3
  • 32
    • 84904076057 scopus 로고    scopus 로고
    • Dataset size and composition impact the reliability of performance benchmarks for peptide-MHC binding predictions
    • Kim, Y., J. Sidney, S. Buus, A. Sette, M. Nielsen, and B. Peters. 2014. Dataset size and composition impact the reliability of performance benchmarks for peptide-MHC binding predictions. BMC Bioinformatics 15: 241.
    • (2014) BMC Bioinformatics , vol.15 , pp. 241
    • Kim, Y.1    Sidney, J.2    Buus, S.3    Sette, A.4    Nielsen, M.5    Peters, B.6
  • 33
    • 4644272170 scopus 로고    scopus 로고
    • Potent T cell response to a class I-binding 13-mer viral epitope and the influence of HLA micropolymorphism in controlling epitope length
    • Green, K. J., J. J. Miles, J. Tellam, W. J. van Zuylen, G. Connolly, and S. R. Burrows. 2004. Potent T cell response to a class I-binding 13-mer viral epitope and the influence of HLA micropolymorphism in controlling epitope length. Eur. J. Immunol. 34: 2510-2519.
    • (2004) Eur. J. Immunol. , vol.34 , pp. 2510-2519
    • Green, K.J.1    Miles, J.J.2    Tellam, J.3    Van Zuylen, W.J.4    Connolly, G.5    Burrows, S.R.6
  • 35
    • 0035927041 scopus 로고    scopus 로고
    • An alternative open reading frame of the human macrophage colony-stimulating factor gene is independently translated and codes for an antigenic peptide of 14 amino acids recognized by tumor-infiltrating CD8 T lymphocytes
    • Probst-Kepper, M., V. Stroobant, R. Kridel, B. Gaugler, C. Landry, F. Brasseur, J. P. Cosyns, B. Weynand, T. Boon, and B. J. Van Den Eynde. 2001. An alternative open reading frame of the human macrophage colony-stimulating factor gene is independently translated and codes for an antigenic peptide of 14 amino acids recognized by tumor-infiltrating CD8 T lymphocytes. J. Exp. Med. 193: 1189-1198.
    • (2001) J. Exp. Med. , vol.193 , pp. 1189-1198
    • Probst-Kepper, M.1    Stroobant, V.2    Kridel, R.3    Gaugler, B.4    Landry, C.5    Brasseur, F.6    Cosyns, J.P.7    Weynand, B.8    Boon, T.9    Van Den Eynde, B.J.10
  • 36
    • 78650675638 scopus 로고    scopus 로고
    • RNA polymerase II inhibitors dissociate antigenic peptide generation from normal viral protein synthesis: A role for nuclear translation in defective ribosomal product synthesis?
    • Dolan, B. P., J. J. Knowlton, A. David, J. R. Bennink, and J. W. Yewdell. 2010. RNA polymerase II inhibitors dissociate antigenic peptide generation from normal viral protein synthesis: a role for nuclear translation in defective ribosomal product synthesis? J. Immunol. 185: 6728-6733.
    • (2010) J. Immunol. , vol.185 , pp. 6728-6733
    • Dolan, B.P.1    Knowlton, J.J.2    David, A.3    Bennink, J.R.4    Yewdell, J.W.5
  • 37
    • 84887046208 scopus 로고    scopus 로고
    • Translation of pre-spliced RNAs in the nuclear compartment generates peptides for the MHC class I pathway
    • Apcher, S., G. Millot, C. Daskalogianni, A. Scherl, B. Manoury, and R. Fåhraeus. 2013. Translation of pre-spliced RNAs in the nuclear compartment generates peptides for the MHC class I pathway. Proc. Natl. Acad. Sci. USA 110: 17951-17956.
    • (2013) Proc. Natl. Acad. Sci. USA , vol.110 , pp. 17951-17956
    • Apcher, S.1    Millot, G.2    Daskalogianni, C.3    Scherl, A.4    Manoury, B.5    Fåhraeus, R.6
  • 40
    • 0016815161 scopus 로고
    • Clonal isolation of epithelial cells from mouse lung adenoma
    • Stoner, G. D., Y. Kikkawa, A. J. Kniazeff, K. Miyai, and R. M. Wagner. 1975. Clonal isolation of epithelial cells from mouse lung adenoma. Cancer Res. 35: 2177-2185.
    • (1975) Cancer Res , vol.35 , pp. 2177-2185
    • Stoner, G.D.1    Kikkawa, Y.2    Kniazeff, A.J.3    Miyai, K.4    Wagner, R.M.5
  • 41
    • 0037229598 scopus 로고    scopus 로고
    • Systematic search fails to detect immunogenic MHC class-I-restricted determinants encoded by influenza A virus noncoding sequences
    • Chen, W., J. R. Bennink, and J. W. Yewdell. 2003. Systematic search fails to detect immunogenic MHC class-I-restricted determinants encoded by influenza A virus noncoding sequences. Virology 305: 50-54.
    • (2003) Virology , vol.305 , pp. 50-54
    • Chen, W.1    Bennink, J.R.2    Yewdell, J.W.3
  • 42
    • 84880385900 scopus 로고    scopus 로고
    • PB1-F2 expedition from the whole protein through the domain to aa residue function
    • Kosík, I., J. Hollý, and G. Russ. 2013. PB1-F2 expedition from the whole protein through the domain to aa residue function. Acta Virol. 57: 138-148.
    • (2013) Acta Virol , vol.57 , pp. 138-148
    • Kosík, I.1    Hollý, J.2    Russ, G.3
  • 43
    • 84876793270 scopus 로고    scopus 로고
    • An insight into the PB1F2 protein and its multifunctional role in enhancing the pathogenicity of the influenza A viruses
    • Chakrabarti, A. K., and G. Pasricha. 2013. An insight into the PB1F2 protein and its multifunctional role in enhancing the pathogenicity of the influenza A viruses. Virology 440: 97-104.
    • (2013) Virology , vol.440 , pp. 97-104
    • Chakrabarti, A.K.1    Pasricha, G.2
  • 48
    • 84921423477 scopus 로고    scopus 로고
    • Antimicrobial and immunomodulatory properties of PGLa-AM1, CPF-AM1, and magainin-AM1: Potent activity against oral pathogens
    • McLean, D. T., M. T. McCrudden, G. J. Linden, C. R. Irwin, J. M. Conlon, and F. T. Lundy. 2014. Antimicrobial and immunomodulatory properties of PGLa-AM1, CPF-AM1, and magainin-AM1: potent activity against oral pathogens. Regul. Pept. 194-195: 63-68.
    • (2014) Regul. Pept. , vol.194-195 , pp. 63-68
    • McLean, D.T.1    McCrudden, M.T.2    Linden, G.J.3    Irwin, C.R.4    Conlon, J.M.5    Lundy, F.T.6
  • 50
    • 0028209823 scopus 로고
    • Two functional domains of the influenza virus NS1 protein are required for regulation of nuclear export of mRNA
    • Qian, X. Y., F. Alonso-Caplen, and R. M. Krug. 1994. Two functional domains of the influenza virus NS1 protein are required for regulation of nuclear export of mRNA. J. Virol. 68: 2433-2441.
    • (1994) J. Virol. , vol.68 , pp. 2433-2441
    • Qian, X.Y.1    Alonso-Caplen, F.2    Krug, R.M.3
  • 51
    • 33751242334 scopus 로고    scopus 로고
    • Double-stranded RNA binding of influenza B virus nonstructural NS1 protein inhibits protein kinase R but is not essential to antagonize production of alpha/beta interferon
    • Dauber, B., J. Schneider, and T. Wolff. 2006. Double-stranded RNA binding of influenza B virus nonstructural NS1 protein inhibits protein kinase R but is not essential to antagonize production of alpha/beta interferon. J. Virol. 80: 11667-11677.
    • (2006) J. Virol. , vol.80 , pp. 11667-11677
    • Dauber, B.1    Schneider, J.2    Wolff, T.3
  • 53
    • 84991497882 scopus 로고    scopus 로고
    • Presentation of cryptic peptides by MHC class I is enhanced by inflammatory stimuli
    • Prasad, S., S. R. Starck, and N. Shastri. 2016. Presentation of cryptic peptides by MHC class I is enhanced by inflammatory stimuli. J. Immunol. 197: 2981-2991.
    • (2016) J. Immunol. , vol.197 , pp. 2981-2991
    • Prasad, S.1    Starck, S.R.2    Shastri, N.3
  • 56
    • 33749528390 scopus 로고    scopus 로고
    • Confronting complexity: Real-world immunodominance in antiviral CD8+ T cell responses
    • Yewdell, J. W. 2006. Confronting complexity: real-world immunodominance in antiviral CD8+ T cell responses. Immunity 25: 533-543.
    • (2006) Immunity , vol.25 , pp. 533-543
    • Yewdell, J.W.1
  • 57
    • 84876865164 scopus 로고    scopus 로고
    • Immunodomination during peripheral vaccinia virus infection
    • Lin, L. C., I. E. Flesch, and D. C. Tscharke. 2013. Immunodomination during peripheral vaccinia virus infection. PLoS Pathog. 9: e1003329.
    • (2013) PLoS Pathog , vol.9
    • Lin, L.C.1    Flesch, I.E.2    Tscharke, D.C.3
  • 58
    • 84974785437 scopus 로고    scopus 로고
    • Defining viral defective ribosomal products: Standard and alternative translation initiation events generate a common peptide from influenza a virus M2 and M1 mRNAs
    • Yang, N., J. S. Gibbs, H. D. Hickman, G. V. Reynoso, A. K. Ghosh, J. R. Bennink, and J. W. Yewdell. 2016. Defining viral defective ribosomal products: standard and alternative translation initiation events generate a common peptide from influenza a virus M2 and M1 mRNAs. J. Immunol. 196: 3608-3617.
    • (2016) J. Immunol. , vol.196 , pp. 3608-3617
    • Yang, N.1    Gibbs, J.S.2    Hickman, H.D.3    Reynoso, G.V.4    Ghosh, A.K.5    Bennink, J.R.6    Yewdell, J.W.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.