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Volumn 47, Issue D1, 2019, Pages D1164-D1171

Aledb 1.0: A database of mutations from adaptive laboratory evolution experimentation

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; GENETIC SUSCEPTIBILITY; PUBLICATION; SOMATIC MUTATION; WORKFLOW; ADAPTATION; BACTERIAL GENE; BIOLOGY; DIRECTED MOLECULAR EVOLUTION; ESCHERICHIA COLI; GENETIC DATABASE; GENETICS; GROWTH, DEVELOPMENT AND AGING; INTERNET; MICROBIOLOGICAL EXAMINATION; MUTATION; PROCEDURES; REPRODUCIBILITY; SINGLE NUCLEOTIDE POLYMORPHISM;

EID: 85059797147     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gky983     Document Type: Article
Times cited : (80)

References (21)
  • 1
    • 0038441327 scopus 로고    scopus 로고
    • Evolution experiments with microorganisms: The dynamics and genetic bases of adaptation
    • Elena,S.F. and Lenski,R.E. (2003) Evolution experiments with microorganisms: the dynamics and genetic bases of adaptation. Nat. Rev. Genet. 4, 457-469
    • (2003) Nat. Rev. Genet , vol.4 , pp. 457-469
    • Elena, S.F.1    Lenski, R.E.2
  • 2
    • 84879489028 scopus 로고    scopus 로고
    • Adaptive laboratory evolution - Principles and applications for biotechnology
    • Dragosits,M. and Mattanovich,D. (2013) Adaptive laboratory evolution - principles and applications for biotechnology. Microb. Cell Fact. 12, 64
    • (2013) Microb. Cell Fact , vol.12 , pp. 64
    • Dragosits, M.1    Mattanovich, D.2
  • 4
    • 79952972019 scopus 로고    scopus 로고
    • Adaptive laboratory evolution this tool for studying molecular mechanisms and evolutionary dynamics follows bacteria as they adapt to environmental stress
    • Palsson,B. (2011) Adaptive laboratory evolution this tool for studying molecular mechanisms and evolutionary dynamics follows bacteria as they adapt to environmental stress. Microbe, 6, 69-74
    • (2011) Microbe , vol.6 , pp. 69-74
    • Palsson, B.1
  • 6
    • 77957746208 scopus 로고    scopus 로고
    • Genome-wide mutational diversity in an evolving population of Escherichia coli
    • Barrick,J.E. and Lenski,R.E. (2009) Genome-wide mutational diversity in an evolving population of Escherichia coli. Cold Spring Harb. Symp. Quant. Biol. 74, 119-129
    • (2009) Cold Spring Harb. Symp. Quant. Biol , vol.74 , pp. 119-129
    • Barrick, J.E.1    Lenski, R.E.2
  • 8
    • 79957958115 scopus 로고    scopus 로고
    • Diminishing returns epistasis among beneficial mutations decelerates adaptation
    • Chou,H.-H., Chiu,H.-C., Delaney,N.F., Segre,D. and Marx,C.J. (2011) Diminishing returns epistasis among beneficial mutations decelerates adaptation. Science, 332, 1190-1192.
    • (2011) Science , vol.332 , pp. 1190-1192
    • Chou, H.-H.1    Chiu, H.-C.2    Delaney, N.F.3    Segre, D.4    Marx, C.J.5
  • 9
    • 84959504252 scopus 로고    scopus 로고
    • Synthetic evolution of metabolic productivity using biosensors
    • Williams,T.C., Pretorius,I.S. and Paulsen,I.T. (2016) Synthetic evolution of metabolic productivity using biosensors. Trends Biotechnol., 34, 371-381.
    • (2016) Trends Biotechnol , vol.34 , pp. 371-381
    • Williams, T.C.1    Pretorius, I.S.2    Paulsen, I.T.3
  • 14
    • 84962602150 scopus 로고    scopus 로고
    • Evolution of e. coli on [u-13c]glucose reveals a negligible isotopic influence on metabolism and physiology
    • Sandberg,T.E., Long,C.P., Gonzalez,J.E., Feist,A.M., Antoniewicz,M.R. and Palsson,B.O. (2016) Evolution of E. coli on [U-13C]Glucose reveals a negligible isotopic influence on metabolism and physiology. PLoS One, 11, e0151130.
    • (2016) PLoS One , vol.11 , pp. e0151130
    • Sandberg, T.E.1    Long, C.P.2    Gonzalez, J.E.3    Feist, A.M.4    Antoniewicz, M.R.5    Palsson, B.O.6
  • 15
    • 85020503243 scopus 로고    scopus 로고
    • Laboratory evolution to alternating substrate environments yields distinct phenotypic and genetic adaptive strategies
    • Sandberg,T.E., Lloyd,C.J., Palsson,B.O. and Feist,A.M. (2017) Laboratory evolution to alternating substrate environments yields distinct phenotypic and genetic adaptive strategies. Appl. Environ. Microbiol., 83, e00410-17.
    • (2017) Appl. Environ. Microbiol , vol.83 , pp. e00410-e00417
    • Sandberg, T.E.1    Lloyd, C.J.2    Palsson, B.O.3    Feist, A.M.4
  • 16
    • 85016589864 scopus 로고    scopus 로고
    • A model for designing adaptive laboratory evolution experiments
    • LaCroix,R.A., Palsson,B.O. and Feist,A.M. (2017) A model for designing adaptive laboratory evolution experiments. Appl. Environ. Microbiol., 83, e03115-16.
    • (2017) Appl. Environ. Microbiol , vol.83 , pp. e03115-e03116
    • LaCroix, R.A.1    Palsson, B.O.2    Feist, A.M.3
  • 17
    • 85040197882 scopus 로고    scopus 로고
    • Dissecting the genetic and metabolic mechanisms of adaptation to the knockout of a major metabolic enzyme in Escherichia coli
    • Long,C.P., Gonzalez,J.E., Feist,A.M., Palsson,B.O. and Antoniewicz,M.R. (2018) Dissecting the genetic and metabolic mechanisms of adaptation to the knockout of a major metabolic enzyme in Escherichia coli. Proc. Natl. Acad. Sci. U.S.A., 115, 222-227.
    • (2018) Proc. Natl. Acad. Sci. U.S.A , vol.115 , pp. 222-227
    • Long, C.P.1    Gonzalez, J.E.2    Feist, A.M.3    Palsson, B.O.4    Antoniewicz, M.R.5
  • 18
    • 84860663163 scopus 로고    scopus 로고
    • Evolutionary insight from whole-genome sequencing of experimentally evolved microbes
    • Dettman,J.R., Rodrigue,N., Melnyk,A.H., Wong,A., Bailey,S.F. and Kassen,R. (2012) Evolutionary insight from whole-genome sequencing of experimentally evolved microbes. Mol. Ecol., 21, 2058-2077.
    • (2012) Mol. Ecol , vol.21 , pp. 2058-2077
    • Dettman, J.R.1    Rodrigue, N.2    Melnyk, A.H.3    Wong, A.4    Bailey, S.F.5    Kassen, R.6
  • 19
    • 84917686994 scopus 로고    scopus 로고
    • Identification of mutations in laboratory-evolved microbes from next-generation sequencing data using breseq
    • Deatherage,D.E. and Barrick,J.E. (2014) Identification of mutations in laboratory-evolved microbes from next-generation sequencing data using breseq. Methods Mol. Biol, 1151, 165-188
    • (2014) Methods Mol. Biol , vol.1151 , pp. 165-188
    • Deatherage, D.E.1    Barrick, J.E.2
  • 21
    • 85015226001 scopus 로고    scopus 로고
    • Afterqc: Automatic filtering, trimming, error removing and quality control for fastq data
    • Chen,S., Huang,T., Zhou,Y., Han,Y., Xu,M. and Gu,J. (2017) AfterQC: automatic filtering, trimming, error removing and quality control for fastq data. BMC Bioinformatics, 18, 80.
    • (2017) BMC Bioinformatics , vol.18 , pp. 80
    • Chen, S.1    Huang, T.2    Zhou, Y.3    Han, Y.4    Xu, M.5    Gu, J.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.