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Volumn 68, Issue 12, 2019, Pages 1993-2002

The effect of influenza virus on the human oropharyngeal microbiome

Author keywords

Influenza; Microbiome; Upper respiratory tract

Indexed keywords

RNA 16S;

EID: 85059644795     PISSN: 10584838     EISSN: 15376591     Source Type: Journal    
DOI: 10.1093/cid/ciy821     Document Type: Article
Times cited : (35)

References (44)
  • 1
    • 84921653338 scopus 로고    scopus 로고
    • Secondary bacterial infections in influenza virus infection pathogenesis
    • Smith AM, McCullers JA. Secondary bacterial infections in influenza virus infection pathogenesis. Curr Top Microbiol Immunol 2014; 385:327–56.
    • (2014) Curr Top Microbiol Immunol , vol.385 , pp. 327-356
    • Smith, A.M.1    McCullers, J.A.2
  • 3
    • 80053634686 scopus 로고    scopus 로고
    • Autopsy series of 68 cases dying before and during the 1918 influenza pandemic peak
    • Sheng ZM, Chertow DS, Ambroggio X, et al. Autopsy series of 68 cases dying before and during the 1918 influenza pandemic peak. Proc Natl Acad Sci USA 2011; 108:16416–21.
    • (2011) Proc Natl Acad Sci USA , vol.108 , pp. 16416-16421
    • Sheng, Z.M.1    Chertow, D.S.2    Ambroggio, X.3
  • 4
    • 77951817887 scopus 로고    scopus 로고
    • Fatalities associated with the 2009 H1N1 influenza A virus in New York city
    • Lee EH, Wu C, Lee EU, et al. Fatalities associated with the 2009 H1N1 influenza A virus in New York city. Clin Infect Dis 2010; 50:1498–504.
    • (2010) Clin Infect Dis , vol.50 , pp. 1498-1504
    • Lee, E.H.1    Wu, C.2    Lee, E.U.3
  • 5
    • 49749210869 scopus 로고
    • A virus obtained from influenza patients
    • Smith W, Andrewes CH, Laidlaw PP. A virus obtained from influenza patients. Lancet 1933; 2:66–8.
    • (1933) Lancet , vol.2 , pp. 66-68
    • Smith, W.1    Andrewes, C.H.2    Laidlaw, P.P.3
  • 6
    • 33746483285 scopus 로고    scopus 로고
    • Insights into the interaction between influenza virus and pneumococcus
    • McCullers JA. Insights into the interaction between influenza virus and pneumococcus. Clin Microbiol Rev 2006; 19:571–82.
    • (2006) Clin Microbiol Rev , vol.19 , pp. 571-582
    • McCullers, J.A.1
  • 7
    • 77952508365 scopus 로고    scopus 로고
    • Community-acquired pneumonia due to pandemic A(H1N1)2009 influenzavirus and methicillin resistant Staphylococcus aureus co-infection
    • Murray RJ, Robinson JO, White JN, et al. Community-acquired pneumonia due to pandemic A(H1N1)2009 influenzavirus and methicillin resistant Staphylococcus aureus co-infection. PLoS One 2010; 5:e8705.
    • (2010) PLoS One , vol.5
    • Murray, R.J.1    Robinson, J.O.2    White, J.N.3
  • 9
    • 0028946220 scopus 로고
    • Viral potentiation of bacterial superinfection of the respiratory tract
    • Bakaletz LO. Viral potentiation of bacterial superinfection of the respiratory tract. Trends Microbiol 1995; 3:110–4.
    • (1995) Trends Microbiol , vol.3 , pp. 110-114
    • Bakaletz, L.O.1
  • 11
    • 84896399845 scopus 로고    scopus 로고
    • The co-pathogenesis of influenza viruses with bacteria in the lung
    • McCullers JA. The co-pathogenesis of influenza viruses with bacteria in the lung. Nat Rev Microbiol 2014; 12:252–62.
    • (2014) Nat Rev Microbiol , vol.12 , pp. 252-262
    • McCullers, J.A.1
  • 12
    • 22244471025 scopus 로고    scopus 로고
    • Influenza virus neuraminidase contributes to secondary bacterial pneumonia
    • Peltola VT, Murti KG, McCullers JA. Influenza virus neuraminidase contributes to secondary bacterial pneumonia. J Infect Dis 2005; 192:249–57.
    • (2005) J Infect Dis , vol.192 , pp. 249-257
    • Peltola, V.T.1    Murti, K.G.2    McCullers, J.A.3
  • 13
    • 0036892227 scopus 로고    scopus 로고
    • Neuraminidase expressed by Streptococcus pneumoniae desialylates the lipopolysaccharide of Neisseria meningitidis and Haemophilus influenzae: A paradigm for interbacterial competition among pathogens of the human respiratory tract
    • Shakhnovich EA, King SJ, Weiser JN. Neuraminidase expressed by Streptococcus pneumoniae desialylates the lipopolysaccharide of Neisseria meningitidis and Haemophilus influenzae: a paradigm for interbacterial competition among pathogens of the human respiratory tract. Infect Immun 2002; 70:7161–4.
    • (2002) Infect Immun , vol.70 , pp. 7161-7164
    • Shakhnovich, E.A.1    King, S.J.2    Weiser, J.N.3
  • 14
    • 84920952426 scopus 로고    scopus 로고
    • Desialylation of airway epithelial cells during influenza virus infection enhances pneumococcal adhesion via galectin binding
    • Nita-Lazar M, Banerjee A, Feng C, et al. Desialylation of airway epithelial cells during influenza virus infection enhances pneumococcal adhesion via galectin binding. Mol Immunol 2015; 65:1–16.
    • (2015) Mol Immunol , vol.65 , pp. 1-16
    • Nita-Lazar, M.1    Banerjee, A.2    Feng, C.3
  • 15
    • 84867642939 scopus 로고    scopus 로고
    • Galectin-3 binds Neisseria meningitidis and increases interaction with phagocytic cells
    • Quattroni P, Li Y, Lucchesi D, et al. Galectin-3 binds Neisseria meningitidis and increases interaction with phagocytic cells. Cell Microbiol 2012; 14:1657–75.
    • (2012) Cell Microbiol , vol.14 , pp. 1657-1675
    • Quattroni, P.1    Li, Y.2    Lucchesi, D.3
  • 16
    • 84904178449 scopus 로고    scopus 로고
    • Influenza promotes pneumococcal growth during coinfection by providing host sialylated substrates as a nutrient source
    • Siegel SJ, Roche AM, Weiser JN. Influenza promotes pneumococcal growth during coinfection by providing host sialylated substrates as a nutrient source. Cell Host Microbe 2014; 16:55–67.
    • (2014) Cell Host Microbe , vol.16 , pp. 55-67
    • Siegel, S.J.1    Roche, A.M.2    Weiser, J.N.3
  • 17
    • 84863920287 scopus 로고    scopus 로고
    • Microbial interactions: From networks to models
    • Faust K, Raes J. Microbial interactions: from networks to models. Nat Rev Microbiol 2012; 10:538–50.
    • (2012) Nat Rev Microbiol , vol.10 , pp. 538-550
    • Faust, K.1    Raes, J.2
  • 18
    • 78650868433 scopus 로고    scopus 로고
    • Disordered microbial communities in the upper respiratory tract of cigarette smokers
    • Charlson ES, Chen J, Custers-Allen R, et al. Disordered microbial communities in the upper respiratory tract of cigarette smokers. PLoS One 2010; 5:e15216.
    • (2010) PLoS One , vol.5
    • Charlson, E.S.1    Chen, J.2    Custers-Allen, R.3
  • 19
    • 84892607701 scopus 로고    scopus 로고
    • Seven-valent pneumococcal conjugate vaccine and nasopharyngeal microbiota in healthy children
    • Biesbroek G, Wang X, Keijser BJ, et al. Seven-valent pneumococcal conjugate vaccine and nasopharyngeal microbiota in healthy children. Emerg Infect Dis 2014; 20:201–10.
    • (2014) Emerg Infect Dis , vol.20 , pp. 201-210
    • Biesbroek, G.1    Wang, X.2    Keijser, B.J.3
  • 21
    • 84859517821 scopus 로고    scopus 로고
    • From microbe to microbiota: Considering microbial community composition in infections and airway diseases
    • Huang YJ, Lynch SV, Wiener-Kronish JP. From microbe to microbiota: considering microbial community composition in infections and airway diseases. Am J Respir Crit Care Med 2012; 185:691–2.
    • (2012) Am J Respir Crit Care Med , vol.185 , pp. 691-692
    • Huang, Y.J.1    Lynch, S.V.2    Wiener-Kronish, J.P.3
  • 22
    • 84936141449 scopus 로고    scopus 로고
    • Dysbiosis of upper respiratory tract microbiota in elderly pneumonia patients
    • de Steenhuijsen Piters WA, Huijskens EG, Wyllie AL, et al. Dysbiosis of upper respiratory tract microbiota in elderly pneumonia patients. ISME J 2016; 10:97–108.
    • (2016) ISME J , vol.10 , pp. 97-108
    • De Steenhuijsen Piters, W.A.1    Huijskens, E.G.2    Wyllie, A.L.3
  • 23
    • 84859576702 scopus 로고    scopus 로고
    • Decade-long bacterial community dynamics in cystic fibrosis airways
    • Zhao J, Schloss PD, Kalikin LM, et al. Decade-long bacterial community dynamics in cystic fibrosis airways. Proc Natl Acad Sci USA 2012; 109:5809–14.
    • (2012) Proc Natl Acad Sci USA , vol.109 , pp. 5809-5814
    • Zhao, J.1    Schloss, P.D.2    Kalikin, L.M.3
  • 24
  • 25
    • 84964315557 scopus 로고    scopus 로고
    • Profiling bacterial community in upper respiratory tracts
    • Yi H, Yong D, Lee K, Cho YJ, Chun J. Profiling bacterial community in upper respiratory tracts. BMC Infect Dis 2014; 14:583.
    • (2014) BMC Infect Dis , vol.14 , pp. 583
    • Yi, H.1    Yong, D.2    Lee, K.3    Cho, Y.J.4    Chun, J.5
  • 27
  • 28
    • 72949107142 scopus 로고    scopus 로고
    • Introducing mothur: Open-source, platform-independent, community-supported software for describing and comparing microbial communities
    • Schloss PD, Westcott SL, Ryabin T, et al. Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol 2009; 75:7537–41.
    • (2009) Appl Environ Microbiol , vol.75 , pp. 7537-7541
    • Schloss, P.D.1    Westcott, S.L.2    Ryabin, T.3
  • 30
    • 0001463548 scopus 로고
    • Nonparametric-estimation of the number of classes in a population
    • Chao A. Nonparametric-estimation of the number of classes in a population. Scand J Stat 1984; 11:265–70.
    • (1984) Scand J Stat , vol.11 , pp. 265-270
    • Chao, A.1
  • 31
    • 84872944584 scopus 로고    scopus 로고
    • Estimating the number of species with CatchAll
    • Bunge J. Estimating the number of species with CatchAll. Pac Symp Biocomput 2011:121–30.
    • (2011) Pac Symp Biocomput , pp. 121-130
    • Bunge, J.1
  • 32
    • 33344464667 scopus 로고
    • Measurement of diversity
    • Simpson EH. Measurement of diversity. Nature 1949; 163:688-688.
    • (1949) Nature , vol.163 , pp. 688
    • Simpson, E.H.1
  • 33
    • 84940644968 scopus 로고
    • A mathematical theory of communication
    • Shannon CE. A mathematical theory of communication. Bell Syst Tech J 1948; 27: 379–423.
    • (1948) Bell Syst Tech J , vol.27 , pp. 379-423
    • Shannon, C.E.1
  • 34
    • 0000803388 scopus 로고
    • The population frequencies of species and the estimation of population parameters
    • Good IJ. The population frequencies of species and the estimation of population parameters. Biometrika 1953; 40:237–64.
    • (1953) Biometrika , vol.40 , pp. 237-264
    • Good, I.J.1
  • 35
    • 27744480824 scopus 로고    scopus 로고
    • A similarity measure based on species proportions
    • Yue JC, Clayton MK. A similarity measure based on species proportions. Commun Stat Theory Methods 2005; 34:2123–31.
    • (2005) Commun Stat Theory Methods , vol.34 , pp. 2123-2131
    • Yue, J.C.1    Clayton, M.K.2
  • 36
    • 44849128805 scopus 로고    scopus 로고
    • Species divergence and the measurement of microbial diversity
    • Lozupone CA, Knight R. Species divergence and the measurement of microbial diversity. FEMS Microbiol Rev 2008; 32:557–78.
    • (2008) FEMS Microbiol Rev , vol.32 , pp. 557-578
    • Lozupone, C.A.1    Knight, R.2
  • 38
    • 34548055900 scopus 로고    scopus 로고
    • Evaluation and improvement of real-time PCR assays targeting lytA, ply, and psaA genes for detection of pneumococcal DNA
    • Carvalho Mda G, Tondella ML, McCaustland K, et al. Evaluation and improvement of real-time PCR assays targeting lytA, ply, and psaA genes for detection of pneumococcal DNA. J Clin Microbiol 2007; 45:2460–6.
    • (2007) J Clin Microbiol , vol.45 , pp. 2460-2466
    • Carvalho Mda, G.1    Tondella, M.L.2    McCaustland, K.3
  • 39
    • 0026681074 scopus 로고
    • Analysis of molecular variance inferred from metric distances among DNA haplotypes: Application to human mitochondrial DNA restriction data
    • Excoffier L, Smouse PE, Quattro JM. Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 1992; 131:479–91.
    • (1992) Genetics , vol.131 , pp. 479-491
    • Excoffier, L.1    Smouse, P.E.2    Quattro, J.M.3
  • 40
    • 0025048184 scopus 로고
    • Detecting isolation by distance using phylogenies of genes
    • Slatkin M, Maddison WP. Detecting isolation by distance using phylogenies of genes. Genetics 1990; 126:249–60.
    • (1990) Genetics , vol.126 , pp. 249-260
    • Slatkin, M.1    Maddison, W.P.2
  • 41
    • 79959383523 scopus 로고    scopus 로고
    • Metagenomic biomarker discovery and explanation
    • Segata N, Izard J, Waldron L, et al. Metagenomic biomarker discovery and explanation. Genome Biol 2011; 12:R60.
    • (2011) Genome Biol , vol.12 , pp. R60
    • Segata, N.1    Izard, J.2    Waldron, L.3
  • 42
    • 84879740467 scopus 로고    scopus 로고
    • Characterization of the upper respiratory tract microbiomes of patients with pandemic H1N1 influenza
    • Chaban B, Albert A, Links MG, Gardy J, Tang P, Hill JE. Characterization of the upper respiratory tract microbiomes of patients with pandemic H1N1 influenza. PLoS One 2013; 8:e69559.
    • (2013) PLoS One , vol.8
    • Chaban, B.1    Albert, A.2    Links, M.G.3    Gardy, J.4    Tang, P.5    Hill, J.E.6
  • 43
    • 77949676658 scopus 로고    scopus 로고
    • The influence of IS1301 in the capsule biosynthesis locus on meningococcal carriage and disease
    • Kugelberg E, Gollan B, Farrance C, et al. The influence of IS1301 in the capsule biosynthesis locus on meningococcal carriage and disease. PLoS One 2010; 5:e9413.
    • (2010) PLoS One , vol.5
    • Kugelberg, E.1    Gollan, B.2    Farrance, C.3
  • 44
    • 85050822671 scopus 로고    scopus 로고
    • Nasal microbiota clusters associate with inflammatory response, viral load, and symptom severity in experimental rhinovirus challenge
    • Lehtinen MJ, Hibberd AA, Männikkö S, et al. Nasal microbiota clusters associate with inflammatory response, viral load, and symptom severity in experimental rhinovirus challenge. Sci Rep 2018; 8:11411.
    • (2018) Sci Rep , vol.8 , pp. 11411
    • Lehtinen, M.J.1    Hibberd, A.A.2    Männikkö, S.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.