메뉴 건너뛰기




Volumn 2, Issue 1, 2014, Pages

Characterization of the nasopharyngeal microbiota in health and during rhinovirus challenge

Author keywords

longitudinal; Microbiota; nasopharynx; rhinovirus illness; sequencing

Indexed keywords

BACTERIAL DNA; RNA 16S;

EID: 84936948783     PISSN: None     EISSN: 20492618     Source Type: Journal    
DOI: 10.1186/2049-2618-2-22     Document Type: Article
Times cited : (91)

References (43)
  • 1
    • 0042386116 scopus 로고    scopus 로고
    • Nasopharyngeal reservoir of bacterial otitis media and sinusitis pathogens in adults during wellness and viral respiratory illness
    • Chi DH, Hendley JO, French P, Arango P, Hayden FG, Winther B. Nasopharyngeal reservoir of bacterial otitis media and sinusitis pathogens in adults during wellness and viral respiratory illness. Am J Rhinol 2003, 17:209-214.
    • (2003) Am J Rhinol , vol.17 , pp. 209-214
    • Chi, D.H.1    Hendley, J.O.2    French, P.3    Arango, P.4    Hayden, F.G.5    Winther, B.6
  • 2
    • 17144426934 scopus 로고    scopus 로고
    • Weekly point prevalence of Streptococcus pneumoniae, Hemophilus influenzae and Moraxella catarrhalis in the upper airways of normal young children: effect of respiratory illness and season
    • Hendley JO, Hayden FG, Winther B. Weekly point prevalence of Streptococcus pneumoniae, Hemophilus influenzae and Moraxella catarrhalis in the upper airways of normal young children: effect of respiratory illness and season. APMIS 2005, 113:213-220.
    • (2005) APMIS , vol.113 , pp. 213-220
    • Hendley, J.O.1    Hayden, F.G.2    Winther, B.3
  • 8
    • 84866153940 scopus 로고    scopus 로고
    • Upper respiratory tract microbial communities, acute otitis media pathogens, and antibiotic use in healthy and sick children
    • Pettigrew MM, Laufer AS, Gent JF, Kong Y, Fennie KP, Metlay JP. Upper respiratory tract microbial communities, acute otitis media pathogens, and antibiotic use in healthy and sick children. Appl Environ Microbiol 2012, 78:6262-6270.
    • (2012) Appl Environ Microbiol , vol.78 , pp. 6262-6270
    • Pettigrew, M.M.1    Laufer, A.S.2    Gent, J.F.3    Kong, Y.4    Fennie, K.P.5    Metlay, J.P.6
  • 9
    • 34548293679 scopus 로고    scopus 로고
    • Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
    • Wang Q, Garrity GM, Tiedje JM, Cole JR. Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl Environ Microbiol 2007, 73:5261-5267.
    • (2007) Appl Environ Microbiol , vol.73 , pp. 5261-5267
    • Wang, Q.1    Garrity, G.M.2    Tiedje, J.M.3    Cole, J.R.4
  • 12
    • 0842284589 scopus 로고    scopus 로고
    • Respiratory viruses predisposing to bacterial infections: role of neuraminidase
    • Peltola VT, McCullers JA. Respiratory viruses predisposing to bacterial infections: role of neuraminidase. Pediatr Infect Dis J 2004, 23:S87-S97.
    • (2004) Pediatr Infect Dis J , vol.23 , pp. S87-S97
    • Peltola, V.T.1    McCullers, J.A.2
  • 15
    • 32444435643 scopus 로고    scopus 로고
    • Respiratory viruses augment the adhesion of bacterial pathogens to respiratory epithelium in a viral species- and cell type-dependent manner
    • Avadhanula V, Rodriguez CA, Devincenzo JP, Wang Y, Webby RJ, Ulett GC, Adderson EE. Respiratory viruses augment the adhesion of bacterial pathogens to respiratory epithelium in a viral species- and cell type-dependent manner. J Virol 2006, 80:1629-1636.
    • (2006) J Virol , vol.80 , pp. 1629-1636
    • Avadhanula, V.1    Rodriguez, C.A.2    Devincenzo, J.P.3    Wang, Y.4    Webby, R.J.5    Ulett, G.C.6    Adderson, E.E.7
  • 16
    • 0035168322 scopus 로고    scopus 로고
    • Effect of influenza A virus infection on nasopharyngeal colonization and otitis media induced by transparent or opaque phenotype variants of Streptococcus pneumoniae in the chinchilla model
    • Tong HH, Weiser JN, James MA, DeMaria TF. Effect of influenza A virus infection on nasopharyngeal colonization and otitis media induced by transparent or opaque phenotype variants of Streptococcus pneumoniae in the chinchilla model. Infect Immun 2001, 69:602-606.
    • (2001) Infect Immun , vol.69 , pp. 602-606
    • Tong, H.H.1    Weiser, J.N.2    James, M.A.3    DeMaria, T.F.4
  • 17
    • 33845505972 scopus 로고    scopus 로고
    • Both influenza-induced neutrophil dysfunction and neutrophil-independent mechanisms contribute to increased susceptibility to a secondary Streptococcus pneumoniae infection
    • McNamee LA, Harmsen AG. Both influenza-induced neutrophil dysfunction and neutrophil-independent mechanisms contribute to increased susceptibility to a secondary Streptococcus pneumoniae infection. Infect Immun 2006, 74:6707-6721.
    • (2006) Infect Immun , vol.74 , pp. 6707-6721
    • McNamee, L.A.1    Harmsen, A.G.2
  • 18
    • 0033121181 scopus 로고    scopus 로고
    • Influenza A virus accelerates neutrophil apoptosis and markedly potentiates apoptotic effects of bacteria
    • Colamussi ML, White MR, Crouch E, Hartshorn KL. Influenza A virus accelerates neutrophil apoptosis and markedly potentiates apoptotic effects of bacteria. Blood 1999, 93:2395-2403.
    • (1999) Blood , vol.93 , pp. 2395-2403
    • Colamussi, M.L.1    White, M.R.2    Crouch, E.3    Hartshorn, K.L.4
  • 19
    • 0028920602 scopus 로고
    • Role of the sialophorin (CD43) receptor in mediating influenza A virus-induced polymorphonuclear leukocyte dysfunction
    • Abramson JS, Hudnor HR. Role of the sialophorin (CD43) receptor in mediating influenza A virus-induced polymorphonuclear leukocyte dysfunction. Blood 1995, 85:1615-1619.
    • (1995) Blood , vol.85 , pp. 1615-1619
    • Abramson, J.S.1    Hudnor, H.R.2
  • 20
    • 84897443242 scopus 로고    scopus 로고
    • Nasopharyngeal Proteobacteria are associated with viral etiology and acute wheezing in children with severe bronchiolitis
    • Hyde ER, Petrosino JF, Piedra PA, Camargo CA, Espinola JA, Mansbach JM. Nasopharyngeal Proteobacteria are associated with viral etiology and acute wheezing in children with severe bronchiolitis. J Allergy Clin Immunol 2014, 133:1220-1222.
    • (2014) J Allergy Clin Immunol , vol.133 , pp. 1220-1222
    • Hyde, E.R.1    Petrosino, J.F.2    Piedra, P.A.3    Camargo, C.A.4    Espinola, J.A.5    Mansbach, J.M.6
  • 22
    • 84884819867 scopus 로고    scopus 로고
    • Bacteria in the nose of young adults during wellness and rhinovirus colds: detection by culture and microarray methods in 100 nasal lavage specimens
    • Allen EK, Pitkaranta A, Maki M, Hendley JO, Laakso S, Sale MM, Winther B. Bacteria in the nose of young adults during wellness and rhinovirus colds: detection by culture and microarray methods in 100 nasal lavage specimens. Int Forum Allergy Rhinol 2013, 3:731-739.
    • (2013) Int Forum Allergy Rhinol , vol.3 , pp. 731-739
    • Allen, E.K.1    Pitkaranta, A.2    Maki, M.3    Hendley, J.O.4    Laakso, S.5    Sale, M.M.6    Winther, B.7
  • 24
    • 84873182949 scopus 로고    scopus 로고
    • 16S rRNA survey revealed complex bacterial communities and evidence of bacterial interference on human adenoids
    • Ren T, Glatt DU, Nguyen TN, Allen EK, Early SV, Sale M, Winther B, Wu M. 16S rRNA survey revealed complex bacterial communities and evidence of bacterial interference on human adenoids. Environ Microbiol 2013, 15:535-547.
    • (2013) Environ Microbiol , vol.15 , pp. 535-547
    • Ren, T.1    Glatt, D.U.2    Nguyen, T.N.3    Allen, E.K.4    Early, S.V.5    Sale, M.6    Winther, B.7    Wu, M.8
  • 25
    • 84856282851 scopus 로고    scopus 로고
    • FastQC A quality control tool for high throughput sequence data
    • FastQC A quality control tool for high throughput sequence data. http://www.bioinformatics.babraham.ac.uk/projects/fastqc/.
  • 26
    • 77957244650 scopus 로고    scopus 로고
    • Search and clustering orders of magnitude faster than BLAST
    • Edgar RC. Search and clustering orders of magnitude faster than BLAST. Bioinformatics 2010, 26:2460-2461.
    • (2010) Bioinformatics , vol.26 , pp. 2460-2461
    • Edgar, R.C.1
  • 31
    • 77949718257 scopus 로고    scopus 로고
    • FastTree 2-approximately maximum-likelihood trees for large alignments
    • Price MN, Dehal PS, Arkin AP. FastTree 2-approximately maximum-likelihood trees for large alignments. PLoS One 2010, 5:e9490.
    • (2010) PLoS One , vol.5 , pp. e9490
    • Price, M.N.1    Dehal, P.S.2    Arkin, A.P.3
  • 32
    • 29144464937 scopus 로고    scopus 로고
    • UniFrac: a new phylogenetic method for comparing microbial communities
    • Lozupone C, Knight R. UniFrac: a new phylogenetic method for comparing microbial communities. Appl Environ Microbiol 2005, 71:8228-8235.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 8228-8235
    • Lozupone, C.1    Knight, R.2
  • 33
    • 35348933745 scopus 로고    scopus 로고
    • Multivariate analyses in microbial ecology
    • Ramette A. Multivariate analyses in microbial ecology. FEMS Microbiol Ecol 2007, 62:142-160.
    • (2007) FEMS Microbiol Ecol , vol.62 , pp. 142-160
    • Ramette, A.1
  • 37
    • 33845629463 scopus 로고    scopus 로고
    • Haemophilus haemolyticus: a human respiratory tract commensal to be distinguished from Haemophilus influenzae
    • Murphy TF, Brauer AL, Sethi S, Kilian M, Cai X, Lesse AJ. Haemophilus haemolyticus: a human respiratory tract commensal to be distinguished from Haemophilus influenzae. J Infect Dis 2007, 195:81-89.
    • (2007) J Infect Dis , vol.195 , pp. 81-89
    • Murphy, T.F.1    Brauer, A.L.2    Sethi, S.3    Kilian, M.4    Cai, X.5    Lesse, A.J.6
  • 38
    • 38949135184 scopus 로고    scopus 로고
    • Relationships of nontypeable Haemophilus influenzae strains to hemolytic and nonhemolytic Haemophilus haemolyticus strains
    • McCrea KW, Xie J, LaCross N, Patel M, Mukundan D, Murphy TF, Marrs CF, Gilsdorf JR. Relationships of nontypeable Haemophilus influenzae strains to hemolytic and nonhemolytic Haemophilus haemolyticus strains. J Clin Microbiol 2008, 46:406-416.
    • (2008) J Clin Microbiol , vol.46 , pp. 406-416
    • McCrea, K.W.1    Xie, J.2    LaCross, N.3    Patel, M.4    Mukundan, D.5    Murphy, T.F.6    Marrs, C.F.7    Gilsdorf, J.R.8
  • 40
    • 0035110440 scopus 로고    scopus 로고
    • Computed tomography imaging of the Maxillary and Ethmoid Sinuses in children with short-duration purulent Rhinorrhea
    • Schwartz RH, Pitkaranta A. Computed tomography imaging of the Maxillary and Ethmoid Sinuses in children with short-duration purulent Rhinorrhea. Otolaryngol Head Neck Surg 2001, 124:160-163.
    • (2001) Otolaryngol Head Neck Surg , vol.124 , pp. 160-163
    • Schwartz, R.H.1    Pitkaranta, A.2
  • 41
    • 21044450424 scopus 로고    scopus 로고
    • Radiopaque contrast dye in nasopharynx reaches the middle ear during swallowing and/or yawning
    • Winther B, Gwaltney JM, Phillips CD, Hendley JO. Radiopaque contrast dye in nasopharynx reaches the middle ear during swallowing and/or yawning. Acta Otolaryngol 2005, 125:625-628.
    • (2005) Acta Otolaryngol , vol.125 , pp. 625-628
    • Winther, B.1    Gwaltney, J.M.2    Phillips, C.D.3    Hendley, J.O.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.