Prediction of antibiotic resistance in Escherichia coli from large-scale pan-genome data

PLoS Computational Biology

Volumn 14, Issue 12, 2018, Pages

  Moradigaravand, Danesh ^a,b   Palm, Martin ^c   Farewell, Anne ^c   Mustonen, Ville ^d,e   Warringer, Jonas ^c   Parts, Leopold ^a,f  

^a WELLCOME TRUST SANGER INSTITUTE   (United Kingdom)

^b UNIVERSITY OF BIRMINGHAM   (United Kingdom)

^c UNIVERSITY OF GOTHENBURG   (Sweden)

^d UNIVERSITY OF HELSINKI   (Finland)

^e HELSINKI INSTITUTE FOR INFORMATION TECHNOLOGY   (Finland)

^f UNIVERSITY OF TARTU   (Estonia)

Author keywords

[No Author keywords available]

Indexed keywords

ANTIBIOTICS; DECISION TREES; FORECASTING; GENES; GENOME; HEALTH RISKS; MACHINE LEARNING;

ANTIBIOTICS RESISTANCE; CLINICAL SETTINGS; E. COLI; GENE CONTENT; GLOBAL HEALTH; LARGE-SCALES; POPULATION STRUCTURES; RAPID DETECTION; RESISTANT STRAINS; WHOLE GENOME SEQUENCES;

ESCHERICHIA COLI;

AMOXICILLIN; AMOXICILLIN PLUS CLAVULANIC ACID; AMPICILLIN; ANTIBIOTIC AGENT; CEFALOTIN; CEFOTAXIME; CEFTAZIDIME; CEFUROXIME; CIPROFLOXACIN; GENTAMICIN; PENICILLIN DERIVATIVE; TOBRAMYCIN; TRIMETHOPRIM; ANTIINFECTIVE AGENT; BACTERIAL DNA;

ANTIBIOTIC RESISTANCE; ARTICLE; BACTERIAL GENE; BACTERIAL GENOME; BACTERIAL STRAIN; BACTERIUM ISOLATION; CONTROLLED STUDY; ESCHERICHIA COLI; MEASUREMENT ACCURACY; NONHUMAN; PREDICTION; SINGLE NUCLEOTIDE POLYMORPHISM; WHOLE GENOME SEQUENCING; DNA SEQUENCE; DRUG EFFECT; ESCHERICHIA COLI INFECTION; FORECASTING; GENETICS; GENOME; HUMAN; MICROBIAL SENSITIVITY TEST; MULTIDRUG RESISTANCE; PROCEDURES;

ANTI-BACTERIAL AGENTS; DNA, BACTERIAL; DRUG RESISTANCE, BACTERIAL; DRUG RESISTANCE, MULTIPLE, BACTERIAL; ESCHERICHIA COLI; ESCHERICHIA COLI INFECTIONS; FORECASTING; GENOME; GENOME, BACTERIAL; HUMANS; MICROBIAL SENSITIVITY TESTS; SEQUENCE ANALYSIS, DNA;

EID: 85059243521     PISSN: 1553734X     EISSN: 15537358     Source Type: Journal    
DOI: 10.1371/journal.pcbi.1006258     Document Type: Article

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