Rotavirus-mediated alteration of gut microbiota and its correlation with physiological characteristics in neonatal calves

Journal of Microbiology

Volumn 57, Issue 2, 2019, Pages 113-121

  Jang, Ja Young ^a   Kim, Suhee ^b   Kwon, Min Sung ^a   Lee, Jieun ^a   Yu, Do Hyeon ^c   Song, Ru Hui ^d   Choi, Hak Jong ^a   Park, Jinho ^d  

^a World Institute of Kimchi an Annex of Korea Food Research Institute   (South Korea)

^b National Institute of Animal Science   (South Korea)

^c Gyeongsang National University   (South Korea)

^d Chonbuk National University   (South Korea)

Author keywords

diarrhea; gut microbiota; physiological parameters; rotavirus

Indexed keywords

BACTERIAL DNA; RNA 16S;

ANIMAL; BACTERIUM; BIODIVERSITY; BLOOD; BOVINE; CATTLE DISEASE; CLASSIFICATION; DIARRHEA; DNA SEQUENCE; FECES; FEMALE; GENETICS; INTESTINE FLORA; MALE; MICROBIOLOGY; PATHOGENICITY; PHYLOGENY; ROTAVIRUS; ROTAVIRUS INFECTION; VETERINARY MEDICINE;

ANIMALS; BACTERIA; BIODIVERSITY; CATTLE; CATTLE DISEASES; DIARRHEA; DNA, BACTERIAL; FECES; FEMALE; GASTROINTESTINAL MICROBIOME; MALE; PHYLOGENY; RNA, RIBOSOMAL, 16S; ROTAVIRUS; ROTAVIRUS INFECTIONS; SEQUENCE ANALYSIS, DNA;

EID: 85056888058     PISSN: 12258873     EISSN: 19763794     Source Type: Journal    
DOI: 10.1007/s12275-019-8549-1     Document Type: Article

References (23)

1. Ammar, S.S., Mokhtaria, K., Tahar, B.B., Amar, A.A., Redha, B.A., Yuva, B., Mohamed, H.S., Abdellatif, N., and Laid, B. 2014. Prevalence of rotavirus (GARV) and coronavirus (BCoV) associated with neonatal diarrhea in calves in western Algeria. Asian Pac. J. Trop. Biomed. 4, S318–S322
2. Cho, Y.I., Kim, W.I., Liu, S., Kinyon, J.M., and Yoon, K.J. 2010. Development of a panel of multiplex real-time polymerase chain reaction assays for simultaneous detection of major agents causing calf diarrhea in feces. J. Vet. Diagn. Invest. 22, 509–517
3. Cho, Y.I. and Yoon, K.J. 2014. An overview of calf diarrhea - infectious etiology, diagnosis, and intervention. J. Vet. Sci. 15, 1–17
4. Edrington, T.S., Dowd, S.E., Farrow, R.F., Hagevoort, G.R., Callaway, T.R., Anderson, R.C., and Nisbet, D.J. 2012. Development of colonic microflora as assessed by pyrosequencing in dairy calves fed waste milk. J. Dairy Sci. 95, 4519–4525
5. Gomez, D.E., Arroyo, L.G., Costa, M.C., Viel, L., and Weese, J.S. 2017. Characterization of the fecal bacterial microbiota of healthy and diarrheic dairy calves. J. Vet. Intern. Med. 31, 928–939
6. Gulliksen, S.M., Jor, E., Lie, K.I., Hamnes, I.S., Loken, T., Akerstedt, J., and Osteras, O. 2009. Enteropathogens and risk factors for diarrhea in Norwegian dairy calves. J. Dairy Sci. 92, 5057–5066
7. Hur, T.Y., Jung, Y.H., Choe, C.Y., Cho, Y.I., Kang, S.J., Lee, H.J., Ki, K.S., Baek, K.S., and Suh, G.H. 2013. The dairy calf mortality: the causes of calf death during ten years at a large dairy farm in Korea. Korean J. Vet. Res. 53, 103–108
8. Izzo, M.M., Kirkland, P.D., Mohler, V.L., Perkins, N.R., Gunn, A.A., and House, J.K. 2011. Prevalence of major enteric pathogens in Australian dairy calves with diarrhoea. Aust. Vet. J. 89, 167–173
9. Kapikian, A.Z. and Chanock, R.M. 1996. Rotaviruses, pp. 1657–1708. In Straus, S.E. (ed.), Fields Virology Vol. 2. Lippincott-Raven, Philadelphia, USA
10. Klein-Jobstl, D., Schornsteiner, E., Mann, E., Wagner, M., Drillich, M., and Schmitz-Esser, S. 2014. Pyrosequencing reveals diverse fecal microbiota in simmental calves during early development. Front. Microbiol. 5, 622
11. Kostic, A.D., Xavier, R.J., and Gevers, D. 2014. The microbiome in inflammatory bowel disease: current status and the future ahead. Gastroenterology 146, 1489–1499
12. Li, R.W., Connor, E.E., Li, C., Baldwin Vi, R.L., and Sparks, M.E. 2012. Characterization of the rumen microbiota of pre-ruminant calves using metagenomic tools. Environ. Microbiol. 14, 129–139
13. Lukas, F., Koppova, I., Kudrna, V., and Kopecny, J. 2007. Postnatal development of bacterial population in the gastrointestinal tract of calves. Folia Microbiol. 52, 99–104
14. Margreiter, M., Ludl, K., Phleps, W., and Kaehler, S.T. 2006. Therapeutic value of a Lactobacillus gasseri and Bifidobacterium longum fixed bacterium combination in acute diarrhea: a randomized, double-blind, controlled clinical trial. Int. J. Clin. Pharmacol. Ther. 44, 207–215
15. Millar, H.R., Simpson, J.G., and Stalker, A.L. 1971. An evaluation of the heat precipitation method for plasma fibrinogen estimation. J. Clin. Pathol. 24, 827–830
16. Oikonomou, G., Teixeira, A.G., Foditsch, C., Bicalho, M.L., Machado, V.S., and Bicalho, R.C. 2013. Fecal microbial diversity in preweaned dairy calves as described by pyrosequencing of metagenomic 16S rDNA. Associations of Faecalibacterium species with health and growth. PLoS One 8, e63157
17. Penders, J., Thijs, C., Vink, C., Stelma, F.F., Snijders, B., Kummeling, I., van den Brandt, P.A., and Stobberingh, E.E. 2006. Factors influencing the composition of the intestinal microbiota in early infancy. Pediatrics 118, 511–521
18. Rolhion, N. and Chassaing, B. 2016. When pathogenic bacteria meet the intestinal microbiota. Philos. Trans. R. Soc. Lond. B Biol. Sci. 371, 20150504
19. Singh, P., Teal, T.K., Marsh, T.L., Tiedje, J.M., Mosci, R., Jernigan, K., Zell, A., Newton, D.W., Salimnia, H., Lephart, P., et al. 2015. Intestinal microbial communities associated with acute enteric infections and disease recovery. Microbiome 3, 45
20. Uetake, K. 2013. Newborn calf welfare: a review focusing on mortality rates. Animal Sci. J. 84, 101–105
21. USDA. 2008. Dairy 2007 Part II: changes in the US dairy cattle industry, 1991–2007. Fort Collins: USDA-APHIS-VS, CEAH, 57–61
22. Uyeno, Y., Sekiguchi, Y., and Kamagata, Y. 2010. rRNA-based analysis to monitor succession of faecal bacterial communities in Holstein calves. Lett. Appl. Microbiol. 51, 570–577
23. Wotzka, S.Y., Nguyen, B.D., and Hardt, W.D. 2017. Salmonella Typhimurium diarrhea reveals basic principles of enteropathogen infection and disease-promoted DNA exchange. Cell Host Microbe 21, 443–454