-
1
-
-
78649670032
-
Evaluation of bacterial diversity in the rumen and feces of cattle fed different levels of dried distillers grains plus solubles using bacterial tag-encoded FLX amplicon pyrosequencing
-
Callaway, T. R., Dowd, S. E., Edrington, T. S., Anderson, R. C., Krueger, N., Bauer, N., et al. (2010). Evaluation of bacterial diversity in the rumen and feces of cattle fed different levels of dried distillers grains plus solubles using bacterial tag-encoded FLX amplicon pyrosequencing. J. Anim. Sci. 88, 3977-3983. doi: 10.2527/jas.2010-2900
-
(2010)
J. Anim. Sci.
, vol.88
, pp. 3977-3983
-
-
Callaway, T.R.1
Dowd, S.E.2
Edrington, T.S.3
Anderson, R.C.4
Krueger, N.5
Bauer, N.6
-
2
-
-
0036480737
-
The provision of solid feeds to veal calves: I
-
Cozzi, G., Gottardo, F., Mattiello, S., Canali, E., Scanziani, E., Verga, M., et al. (2002). The provision of solid feeds to veal calves: I. Growth performance, forestomach development, and carcass and meat quality. J. Anim. Sci. 80, 357-366.
-
(2002)
Growth performance, forestomach development, and carcass and meat quality. J. Anim. Sci.
, vol.80
, pp. 357-366
-
-
Cozzi, G.1
Gottardo, F.2
Mattiello, S.3
Canali, E.4
Scanziani, E.5
Verga, M.6
-
3
-
-
84892828465
-
Diet rapidly and reproducibly alters the human gut microbiome
-
David, L. A., Maurice, C. F., Carmody, R. N., Gootenberg, D. B., Button, J. E., Wolfe, B. E., et al. (2014). Diet rapidly and reproducibly alters the human gut microbiome. Nature 505, 559-563. doi: 10.1038/nature12820
-
(2014)
Nature
, vol.505
, pp. 559-563
-
-
David, L.A.1
Maurice, C.F.2
Carmody, R.N.3
Gootenberg, D.B.4
Button, J.E.5
Wolfe, B.E.6
-
4
-
-
77957075815
-
Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa
-
De Filippo, C., Cavalieri, D., Di Paola, M., Ramazzotti, M., Poullet, J. B., Massart, S., et al. (2010). Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa. Proc. Natl. Acad. Sci. U.S.A. 107, 14691-14696. doi: 10.1073/pnas.1005963107
-
(2010)
Proc. Natl. Acad. Sci. U.S.A.
, vol.107
, pp. 14691-14696
-
-
De Filippo, C.1
Cavalieri, D.2
Di Paola, M.3
Ramazzotti, M.4
Poullet, J.B.5
Massart, S.6
-
5
-
-
77955386857
-
Delivery mode shapes the acquisition and structure of the initial microbiota across multiple body habitats in newborns
-
Dominguez-Bello, M. G., Costello, E. K., Contreras, M., Magris, M., Hidalgo, G., Fierer, N., et al. (2010). Delivery mode shapes the acquisition and structure of the initial microbiota across multiple body habitats in newborns. Proc. Natl. Acad. Sci. U.S.A. 107, 11971-11975. doi: 10.1073/pnas.1002601107
-
(2010)
Proc. Natl. Acad. Sci. U.S.A.
, vol.107
, pp. 11971-11975
-
-
Dominguez-Bello, M.G.1
Costello, E.K.2
Contreras, M.3
Magris, M.4
Hidalgo, G.5
Fierer, N.6
-
6
-
-
49549107771
-
Evaluation of the bacterial diversity in the feces of cattle using 16S rDNA bacterial tag-encoded FLX amplicon pyrosequencing (bTEFAP)
-
Dowd, S. E., Callaway, T. R., Wolcott, R. D., Sun, Y., Mckeehan, T., Hagevoort, R. G., et al. (2008). Evaluation of the bacterial diversity in the feces of cattle using 16S rDNA bacterial tag-encoded FLX amplicon pyrosequencing (bTEFAP). BMC Microbiol. 8:125. doi: 10.1186/1471-2180-8-125
-
(2008)
BMC Microbiol.
, vol.8
, pp. 125
-
-
Dowd, S.E.1
Callaway, T.R.2
Wolcott, R.D.3
Sun, Y.4
Mckeehan, T.5
Hagevoort, R.G.6
-
7
-
-
43049149808
-
Calf nutrition from birth to breeding
-
Drackley, J. K. (2008). Calf nutrition from birth to breeding. Vet. Clin. North Am. Food Anim. Pract. 24, 55-86. doi: 10.1016/j.cvfa.2008.01.001
-
(2008)
Vet. Clin. North Am. Food Anim. Pract.
, vol.24
, pp. 55-86
-
-
Drackley, J.K.1
-
8
-
-
79251641527
-
Virulence-associated and antibiotic resistance genes of microbial populations in cattle feces analyzed using a metagenomic approach
-
Durso, L. M., Harhay, G. P., Bono, J. L., and Smith, T. P. (2011). Virulence-associated and antibiotic resistance genes of microbial populations in cattle feces analyzed using a metagenomic approach. J. Microbiol. Methods 84, 278-282. doi: 10.1016/j.mimet.2010.12.008
-
(2011)
J. Microbiol. Methods
, vol.84
, pp. 278-282
-
-
Durso, L.M.1
Harhay, G.P.2
Bono, J.L.3
Smith, T.P.4
-
9
-
-
84864064030
-
Comparison of bacterial communities in faeces of beef cattle fed diets containing corn and wet distillers' grain with solubles
-
Durso, L. M., Wells, J. E., Harhay, G. P., Rice, W. C., Kuehn, L., Bono, J. L., et al. (2012). Comparison of bacterial communities in faeces of beef cattle fed diets containing corn and wet distillers' grain with solubles. Lett. Appl. Microbiol. 55, 109-114. doi: 10.1111/j.1472-765X.2012.03265.x
-
(2012)
Lett. Appl. Microbiol.
, vol.55
, pp. 109-114
-
-
Durso, L.M.1
Wells, J.E.2
Harhay, G.P.3
Rice, W.C.4
Kuehn, L.5
Bono, J.L.6
-
10
-
-
84864045441
-
Development of colonic microflora as assessed by pyrosequencing in dairy calves fed waste milk
-
Edrington, T. S., Dowd, S. E., Farrow, R. F., Hagevoort, G. R., Callaway, T. R., Anderson, R. C., et al. (2012). Development of colonic microflora as assessed by pyrosequencing in dairy calves fed waste milk. J. Dairy Sci. 95, 4519-4525. doi: 10.3168/jds.2011-5119
-
(2012)
J. Dairy Sci.
, vol.95
, pp. 4519-4525
-
-
Edrington, T.S.1
Dowd, S.E.2
Farrow, R.F.3
Hagevoort, G.R.4
Callaway, T.R.5
Anderson, R.C.6
-
11
-
-
84887316790
-
Diversity of the intestinal microbiota in different patterns of feeding infants by Illumina high-throughput sequencing
-
Fan, W., Huo, G., Li, X., Yang, L., Duan, C., Wang, T., et al. (2013). Diversity of the intestinal microbiota in different patterns of feeding infants by Illumina high-throughput sequencing. World J. Microbiol. Biotechnol. 29, 2365-2372. doi: 10.1007/s11274-013-1404-3
-
(2013)
World J. Microbiol. Biotechnol.
, vol.29
, pp. 2365-2372
-
-
Fan, W.1
Huo, G.2
Li, X.3
Yang, L.4
Duan, C.5
Wang, T.6
-
12
-
-
84882603331
-
Effect of dietary copper and breed on gene products involved in copper acquisition, distribution, and use in Angus and Simmental cows and fetuses
-
Fry, R. S., Spears, J. W., Lloyd, K. E., O'Nan, A. T., and Ashwell, M. S. (2013). Effect of dietary copper and breed on gene products involved in copper acquisition, distribution, and use in Angus and Simmental cows and fetuses. J. Anim. Sci. 91, 861-871. doi: 10.2527/jas.2011-3888
-
(2013)
J. Anim. Sci.
, vol.91
, pp. 861-871
-
-
Fry, R.S.1
Spears, J.W.2
Lloyd, K.E.3
O'Nan, A.T.4
Ashwell, M.S.5
-
13
-
-
18244376107
-
Economic analysis of feeding pasteurized nonsaleable milk versus conventional milk replacer to dairy calves
-
Godden, S. M., Fetrow, J. P., Feirtag, J. M., Green, L. R., and Wells, S. J. (2005). Economic analysis of feeding pasteurized nonsaleable milk versus conventional milk replacer to dairy calves. J. Am. Vet. Med. Ass. 226, 1547-1554. doi: 10.2460/javma.2005.226.1547
-
(2005)
J. Am. Vet. Med. Ass.
, vol.226
, pp. 1547-1554
-
-
Godden, S.M.1
Fetrow, J.P.2
Feirtag, J.M.3
Green, L.R.4
Wells, S.J.5
-
14
-
-
84857114196
-
Comparative analyses of foregut and hindgut bacterial communities in hoatzins and cows
-
Godoy-Vitorino, F., Goldfarb, K. C., Karaoz, U., Leal, S., Garcia-Amado, M. A., Hugenholtz, P., et al. (2012). Comparative analyses of foregut and hindgut bacterial communities in hoatzins and cows. ISME J. 6, 531-541. doi: 10.1038/ismej.2011.131
-
(2012)
ISME J.
, vol.6
, pp. 531-541
-
-
Godoy-Vitorino, F.1
Goldfarb, K.C.2
Karaoz, U.3
Leal, S.4
Garcia-Amado, M.A.5
Hugenholtz, P.6
-
15
-
-
84905160371
-
Influence of energy and nutrient supply pre and post partum on performance of multiparous Simmental, Brown Swiss and Holstein cows in early lactation
-
Gruber, L., Urdl, M., Obritzhauser, W., Schauer, A., Häusler, J., and Steiner, B. (2014). Influence of energy and nutrient supply pre and post partum on performance of multiparous Simmental, Brown Swiss and Holstein cows in early lactation. Animal 8, 58-71. doi: 10.1017/S1751731113001894
-
(2014)
Animal
, vol.8
, pp. 58-71
-
-
Gruber, L.1
Urdl, M.2
Obritzhauser, W.3
Schauer, A.4
Häusler, J.5
Steiner, B.6
-
16
-
-
78650354065
-
A prospective study of calf factors affecting first-lactation and lifetime milk production and age of cows when removed from the herd
-
Heinrichs, A. J., and Heinrichs, B. S. (2011). A prospective study of calf factors affecting first-lactation and lifetime milk production and age of cows when removed from the herd. J. Dairy Sci. 94, 336-341. doi: 10.3168/jds.2010-3170
-
(2011)
J. Dairy Sci.
, vol.94
, pp. 336-341
-
-
Heinrichs, A.J.1
Heinrichs, B.S.2
-
17
-
-
84878276427
-
Exploring the bovine rumen bacterial community from birth to adulthood
-
Jami, E., Israel, A., Kotser, A., and Mizrahi, I. (2013). Exploring the bovine rumen bacterial community from birth to adulthood. ISME J. 7, 1069-1079. doi: 10.1038/ismej.2013.2
-
(2013)
ISME J.
, vol.7
, pp. 1069-1079
-
-
Jami, E.1
Israel, A.2
Kotser, A.3
Mizrahi, I.4
-
18
-
-
34547421397
-
Daily dry matter intake to sustain body weight of mature, nonlactating, nonpregnant cows
-
Jenkins, T. G., and Ferrell, C. L. (2007). Daily dry matter intake to sustain body weight of mature, nonlactating, nonpregnant cows. J. Anim. Sci. 85, 1787-1792. doi: 10.2527/jas.2006-678
-
(2007)
J. Anim. Sci.
, vol.85
, pp. 1787-1792
-
-
Jenkins, T.G.1
Ferrell, C.L.2
-
19
-
-
33745226180
-
JColorGrid: software for the visualization of biological measurements
-
Joachimiak, M. P., Weisman, J. L., and May, B. (2006). JColorGrid: software for the visualization of biological measurements. BMC Bioinformatics 7:225. doi: 10.1186/1471-2105-7-225
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 225
-
-
Joachimiak, M.P.1
Weisman, J.L.2
May, B.3
-
20
-
-
84893656118
-
Investigation of bacterial diversity in the feces of cattle fed different diets
-
Kim, M., Kim, J., Kuehn, L. A., Bono, J. L., Berry, E. D., Kalchayanand, N., et al. (2014). Investigation of bacterial diversity in the feces of cattle fed different diets. J. Anim. Sci. 92, 683-694. doi: 10.2527/jas.2013-6841
-
(2014)
J. Anim. Sci.
, vol.92
, pp. 683-694
-
-
Kim, M.1
Kim, J.2
Kuehn, L.A.3
Bono, J.L.4
Berry, E.D.5
Kalchayanand, N.6
-
21
-
-
84904431137
-
Farm characteristics and calf management practices on dairy farms with and without diarrhea: a case-control study to investigate risk factors for calf diarrhea
-
Klein-Jöbstl, D., Iwersen, M., and Drillich, M. (2014). Farm characteristics and calf management practices on dairy farms with and without diarrhea: a case-control study to investigate risk factors for calf diarrhea. J. Dairy Sci. 97, 5110-5119. doi: 10.3168/jds.2013-7695
-
(2014)
J. Dairy Sci.
, vol.97
, pp. 5110-5119
-
-
Klein-Jöbstl, D.1
Iwersen, M.2
Drillich, M.3
-
22
-
-
83755185513
-
Experimental and analytical tools for studying the human microbiome
-
Kuczynski, J., Lauber, C. L., Walters, W. A., Parfrey, L. W., Clemente, J. C., Gevers, D., et al. (2012). Experimental and analytical tools for studying the human microbiome. Nat. Rev. Genet. 13, 47-58. doi: 10.1038/nrg3129
-
(2012)
Nat. Rev. Genet.
, vol.13
, pp. 47-58
-
-
Kuczynski, J.1
Lauber, C.L.2
Walters, W.A.3
Parfrey, L.W.4
Clemente, J.C.5
Gevers, D.6
-
23
-
-
84857596874
-
Using QIIME to analyze 16S rRNA gene sequences from microbial communities
-
Chapter 10: Unit 10.7
-
Kuczynski, J., Stombaugh, J., Walters, W. A., Gonzalez, A., Caporaso, J. G., and Knight, R. (2011). Using QIIME to analyze 16S rRNA gene sequences from microbial communities. Curr. Protoc. Bioinformatics Chapter 10: Unit 10.7. doi: 10.1002/0471250953.bi1007s36
-
(2011)
Curr. Protoc. Bioinformatics
-
-
Kuczynski, J.1
Stombaugh, J.2
Walters, W.A.3
Gonzalez, A.4
Caporaso, J.G.5
Knight, R.6
-
24
-
-
78751581865
-
Analysis of human and animal fecal microbiota for microbial source tracking
-
Lee, J. E., Lee, S., Sung, J., and Ko, G. (2011). Analysis of human and animal fecal microbiota for microbial source tracking. ISME J. 5, 362-365. doi: 10.1038/ismej.2010.120
-
(2011)
ISME J.
, vol.5
, pp. 362-365
-
-
Lee, J.E.1
Lee, S.2
Sung, J.3
Ko, G.4
-
25
-
-
33845901507
-
Microbial ecology: human gut microbes associated with obesity
-
Ley, R. E., Turnbaugh, P. J., Klein, S., and Gordon, J. I. (2006). Microbial ecology: human gut microbes associated with obesity. Nature 444, 1022-1023. doi: 10.1038/4441022a
-
(2006)
Nature
, vol.444
, pp. 1022-1023
-
-
Ley, R.E.1
Turnbaugh, P.J.2
Klein, S.3
Gordon, J.I.4
-
26
-
-
84855275498
-
Characterization of the rumen microbiota of pre-ruminant calves using metagenomic tools
-
Li, R. W., Connor, E. E., Li, C., Baldwin Vi, R. L., and Sparks, M. E. (2012). Characterization of the rumen microbiota of pre-ruminant calves using metagenomic tools. Environ. Microbiol. 14, 129-139. doi: 10.1111/j.1462-2920.2011.02543.x
-
(2012)
Environ. Microbiol.
, vol.14
, pp. 129-139
-
-
Li, R.W.1
Connor, E.E.2
Li, C.3
Baldwin Vi, R.L.4
Sparks, M.E.5
-
27
-
-
84899967349
-
Comparative digestibility of low-quality grass hay by two breeds of cattle differing in mature live weight
-
Lourenço, A. L., Dias-da-Silva, A., Santos, A. S., Rodrigues, M. A., Cone, J. W., and Ferreira, L. M. J. (2014). Comparative digestibility of low-quality grass hay by two breeds of cattle differing in mature live weight. Anim. Physiol. Anim. Nutr. (Berl.) 98, 453-457. doi: 10.1111/jpn.12090
-
(2014)
Anim. Physiol. Anim. Nutr. (Berl.)
, vol.98
, pp. 453-457
-
-
Lourenço, A.L.1
Dias-da-Silva, A.2
Santos, A.S.3
Rodrigues, M.A.4
Cone, J.W.5
Ferreira, L.M.J.6
-
28
-
-
84897596107
-
Taxonomic identification of commensal bacteria associated with the mucosa and digesta throughout the gastrointestinal tracts of preweaned calves
-
Malmuthuge, N., Griebel, P. J., and Guan Le, L. (2014). Taxonomic identification of commensal bacteria associated with the mucosa and digesta throughout the gastrointestinal tracts of preweaned calves. Appl. Environ. Microbiol. 80, 2021-2028. doi: 10.1128/AEM.03864-13
-
(2014)
Appl. Environ. Microbiol.
, vol.80
, pp. 2021-2028
-
-
Malmuthuge, N.1
Griebel, P.J.2
Guan Le, L.3
-
29
-
-
84855281103
-
Distinct commensal bacteria associated with ingesta and mucosal epithelium in the gastrointestinal tracts of calves and chickens
-
Malmuthuge, N., Li, M., Chen, Y., Fries, P., Griebel, P. J., Baurhoo, B., et al. (2012). Distinct commensal bacteria associated with ingesta and mucosal epithelium in the gastrointestinal tracts of calves and chickens. FEMS Microbiol. Ecol. 79, 337-347. doi: 10.1111/j.1574-6941.2011.01220.x
-
(2012)
FEMS Microbiol. Ecol.
, vol.79
, pp. 337-347
-
-
Malmuthuge, N.1
Li, M.2
Chen, Y.3
Fries, P.4
Griebel, P.J.5
Baurhoo, B.6
-
30
-
-
84876722641
-
Effect of calf starter feeding on gut microbial diversity and expression of genes involved in host immune responses and tight junctions in dairy calves during weaning transition
-
Malmuthuge, N., Li, M., Goonewardene, L. A., Oba, M., and Guan, L. L. (2013). Effect of calf starter feeding on gut microbial diversity and expression of genes involved in host immune responses and tight junctions in dairy calves during weaning transition. J. Dairy Sci. 96, 3189-3200. doi: 10.3168/jds.2012-6200
-
(2013)
J. Dairy Sci.
, vol.96
, pp. 3189-3200
-
-
Malmuthuge, N.1
Li, M.2
Goonewardene, L.A.3
Oba, M.4
Guan, L.L.5
-
31
-
-
84870417255
-
The diversity of the fecal bacterial community and its relationship with the concentration of volatile fatty acids in the feces during subacute rumen acidosis in dairy cows
-
Mao, S., Zhang, R., Wang, D., and Zhu, W. (2012). The diversity of the fecal bacterial community and its relationship with the concentration of volatile fatty acids in the feces during subacute rumen acidosis in dairy cows. BMC Vet. Res. 8:237. doi: 10.1186/1746-6148-8-237
-
(2012)
BMC Vet. Res.
, vol.8
, pp. 237
-
-
Mao, S.1
Zhang, R.2
Wang, D.3
Zhu, W.4
-
32
-
-
67651151152
-
The Firmicutes/Bacteroidetes ratio of the human microbiota changes with age
-
Mariat, D., Firmesse, O., Levenez, F., Guimaraes, V., Sokol, H., Dore, J., et al. (2009). The Firmicutes/Bacteroidetes ratio of the human microbiota changes with age. BMC Microbiol. 9:123. doi: 10.1186/1471-2180-9-123
-
(2009)
BMC Microbiol.
, vol.9
, pp. 123
-
-
Mariat, D.1
Firmesse, O.2
Levenez, F.3
Guimaraes, V.4
Sokol, H.5
Dore, J.6
-
33
-
-
78650408264
-
Diet, gut microbiota and immune responses
-
Maslowski, K. M., and Mackay, C. R. (2011). Diet, gut microbiota and immune responses. Nat. Immunol. 12, 5-9. doi: 10.1038/ni0111-5
-
(2011)
Nat. Immunol.
, vol.12
, pp. 5-9
-
-
Maslowski, K.M.1
Mackay, C.R.2
-
34
-
-
76849097039
-
Effect of dietary monensin on the bacterial population structure of dairy cattle colonic contents
-
McGarvey, J. A., Hamilton, S. W., Depeters, E. J., and Mitloehner, F. M. (2010). Effect of dietary monensin on the bacterial population structure of dairy cattle colonic contents. Appl. Microbiol. Biotechnol. 85, 1947-1952. doi: 10.1007/s00253-009-2229-8
-
(2010)
Appl. Microbiol. Biotechnol.
, vol.85
, pp. 1947-1952
-
-
McGarvey, J.A.1
Hamilton, S.W.2
Depeters, E.J.3
Mitloehner, F.M.4
-
35
-
-
68149113980
-
Quality assessments of waste milk at a calf ranch
-
Moore, D. A., Taylor, J., Hartman, M. L., and Sischo, W. M. (2009). Quality assessments of waste milk at a calf ranch. J. Dairy Sci. 92, 3503-3509. doi: 10.3168/jds.2008-1623
-
(2009)
J. Dairy Sci.
, vol.92
, pp. 3503-3509
-
-
Moore, D.A.1
Taylor, J.2
Hartman, M.L.3
Sischo, W.M.4
-
36
-
-
0029097821
-
Phylogenetic relationships of Thiomicrospira species and their identification in deep-sea hydrothermal vent samples by denaturing gradient gel electrophoresis of 16S rDNA fragments
-
Muyzer, G., Teske, A., Wirsen, C. O., and Jannasch, H. W. (1995). Phylogenetic relationships of Thiomicrospira species and their identification in deep-sea hydrothermal vent samples by denaturing gradient gel electrophoresis of 16S rDNA fragments. Arch. Microbiol. 164, 165-172.
-
(1995)
Arch. Microbiol.
, vol.164
, pp. 165-172
-
-
Muyzer, G.1
Teske, A.2
Wirsen, C.O.3
Jannasch, H.W.4
-
37
-
-
34547579868
-
Genotypic microbial community profiling: a critical technical review
-
Nocker, A., Burr, M., and Camper, A. K. (2007). Genotypic microbial community profiling: a critical technical review. Microb. Ecol. 54, 276-289. doi: 10.1007/s00248-006-9199-5
-
(2007)
Microb. Ecol.
, vol.54
, pp. 276-289
-
-
Nocker, A.1
Burr, M.2
Camper, A.K.3
-
38
-
-
84876978213
-
Fecal microbial diversity in pre-weaned dairy calves as described by pyrosequencing of metagenomic 16S rDNA
-
Oikonomou, G., Teixeira, A. G., Foditsch, C., Bicalho, M. L., Machado, V. S., and Bicalho, R. C. (2013). Fecal microbial diversity in pre-weaned dairy calves as described by pyrosequencing of metagenomic 16S rDNA. Associations of Faecalibacterium species with health and growth. PLoS ONE 8:e63157. doi: 10.1371/journal.pone.0063157
-
(2013)
Associations of Faecalibacterium species with health and growth. PLoS ONE
, vol.8
-
-
Oikonomou, G.1
Teixeira, A.G.2
Foditsch, C.3
Bicalho, M.L.4
Machado, V.S.5
Bicalho, R.C.6
-
39
-
-
25844500719
-
Culture-independent analysis of fecal microbiota in cattle
-
Ozutsumi, Y., Hayashi, H., Sakamoto, M., Itabashi, H., and Benno, Y. (2005). Culture-independent analysis of fecal microbiota in cattle. Biosci. Biotechnol. Biochem. 69, 1793-1797. doi: 10.1271/bbb.69.1793
-
(2005)
Biosci. Biotechnol. Biochem.
, vol.69
, pp. 1793-1797
-
-
Ozutsumi, Y.1
Hayashi, H.2
Sakamoto, M.3
Itabashi, H.4
Benno, Y.5
-
40
-
-
34547129847
-
Development of the human infant intestinal microbiota
-
Palmer, C., Bik, E. M., Digiulio, D. B., Relman, D. A., and Brown, P. O. (2007). Development of the human infant intestinal microbiota. PLoS Biol. 5:e177. doi: 10.1371/journal.pbio.0050177
-
(2007)
PLoS Biol.
, vol.5
-
-
Palmer, C.1
Bik, E.M.2
Digiulio, D.B.3
Relman, D.A.4
Brown, P.O.5
-
41
-
-
64649099549
-
Characterization of fecal microbiota from a Salmonella endemic cattle herd as determined by oligonucleotide fingerprinting of rDNA genes
-
Patton, T. G., Scupham, A. J., Bearson, S. M., and Carlson, S. A. (2009). Characterization of fecal microbiota from a Salmonella endemic cattle herd as determined by oligonucleotide fingerprinting of rDNA genes. Vet. Microbiol. 136, 285-292. doi: 10.1016/j.vetmic.2008.10.032
-
(2009)
Vet. Microbiol.
, vol.136
, pp. 285-292
-
-
Patton, T.G.1
Scupham, A.J.2
Bearson, S.M.3
Carlson, S.A.4
-
42
-
-
77952497488
-
Rumen bacterial diversity dynamics associated with changing from bermudagrass hay to grazed winter wheat diets
-
Pitta, D. W., Pinchak, E., Dowd, S. E., Osterstock, J., Gontcharova, V., Youn, E., et al. (2010). Rumen bacterial diversity dynamics associated with changing from bermudagrass hay to grazed winter wheat diets. Microb. Ecol. 59, 511-522. doi: 10.1007/s00248-009-9609-6
-
(2010)
Microb. Ecol.
, vol.59
, pp. 511-522
-
-
Pitta, D.W.1
Pinchak, E.2
Dowd, S.E.3
Osterstock, J.4
Gontcharova, V.5
Youn, E.6
-
43
-
-
37549027613
-
SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB
-
Pruesse, E., Quast, C., Knittel, K., Fuchs, B. M., Ludwig, W., Peplies, J., et al. (2007). SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucleic Acids Res. 35, 7188-7196. doi: 10.1093/nar/gkm864
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. 7188-7196
-
-
Pruesse, E.1
Quast, C.2
Knittel, K.3
Fuchs, B.M.4
Ludwig, W.5
Peplies, J.6
-
44
-
-
84857287626
-
Influence of wet distillers grains diets on beef cattle fecal bacterial community structure
-
Rice, W. C., Galyean, M. L., Cox, S. B., Dowd, S. E., and Cole, N. A. (2012). Influence of wet distillers grains diets on beef cattle fecal bacterial community structure. BMC Microbiol. 12:25. doi: 10.1186/1471-2180-12-25
-
(2012)
BMC Microbiol.
, vol.12
, pp. 25
-
-
Rice, W.C.1
Galyean, M.L.2
Cox, S.B.3
Dowd, S.E.4
Cole, N.A.5
-
45
-
-
78650374859
-
Metagenomic analysis of the uterine bacterial microbiota in healthy and metritic postpartum dairy cows
-
Santos, T. M., Gilbert, R. O., and Bicalho, R. C. (2011). Metagenomic analysis of the uterine bacterial microbiota in healthy and metritic postpartum dairy cows. J. Dairy Sci. 94, 291-302. doi: 10.3168/jds.2010-3668
-
(2011)
J. Dairy Sci.
, vol.94
, pp. 291-302
-
-
Santos, T.M.1
Gilbert, R.O.2
Bicalho, R.C.3
-
46
-
-
83355173006
-
Reducing the effects of PCR amplification and sequencing artifacts on 16S rRNA-based studies
-
Schloss, P. D., Gevers, D., and Westcott, S. L. (2011). Reducing the effects of PCR amplification and sequencing artifacts on 16S rRNA-based studies. PLoS ONE 6:e27310. doi: 10.1371/journal.pone.0027310
-
(2011)
PLoS ONE
, vol.6
-
-
Schloss, P.D.1
Gevers, D.2
Westcott, S.L.3
-
47
-
-
72949107142
-
Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities
-
Schloss, P. D., Westcott, S. L., Ryabin, T., Hall, J. R., Hartmann, M., Hollister, E. B., et al. (2009). Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl. Environ. Microbiol. 75, 7537-7541. doi: 10.1128/AEM.01541-09
-
(2009)
Appl. Environ. Microbiol.
, vol.75
, pp. 7537-7541
-
-
Schloss, P.D.1
Westcott, S.L.2
Ryabin, T.3
Hall, J.R.4
Hartmann, M.5
Hollister, E.B.6
-
48
-
-
79955620831
-
Community structures of fecal bacteria in cattle from different animal feeding operations
-
Shanks, O. C., Kelty, C. A., Archibeque, S., Jenkins, M., Newton, R. J., Mclellan, S. L., et al. (2011). Community structures of fecal bacteria in cattle from different animal feeding operations. Appl. Environ. Microbiol. 77, 2992-3001. doi: 10.1128/AEM.02988-10
-
(2011)
Appl. Environ. Microbiol.
, vol.77
, pp. 2992-3001
-
-
Shanks, O.C.1
Kelty, C.A.2
Archibeque, S.3
Jenkins, M.4
Newton, R.J.5
Mclellan, S.L.6
-
49
-
-
84859014125
-
Improved detection of bifidobacteria with optimised 16S rRNA-gene based pyrosequencing
-
Sim, K., Cox, M. J., Wopereis, H., Martin, R., Knol, J., Li, M. S., et al. (2012). Improved detection of bifidobacteria with optimised 16S rRNA-gene based pyrosequencing. PLoS ONE 7:e32543. doi: 10.1371/journal.pone.0032543
-
(2012)
PLoS ONE
, vol.7
-
-
Sim, K.1
Cox, M.J.2
Wopereis, H.3
Martin, R.4
Knol, J.5
Li, M.S.6
-
50
-
-
84856150726
-
Preweaning milk replacer intake and effects on long-term productivity of dairy calves
-
Soberon, F., Raffrenato, E., Everett, R. W., and Van Amburgh, M. E. (2012). Preweaning milk replacer intake and effects on long-term productivity of dairy calves. J. Dairy Sci. 95, 783-793. doi: 10.3168/jds.2011-4391
-
(2012)
J. Dairy Sci.
, vol.95
, pp. 783-793
-
-
Soberon, F.1
Raffrenato, E.2
Everett, R.W.3
Van Amburgh, M.E.4
-
51
-
-
84901070269
-
Survey of preweaning dairy calf-rearing practices in Czech dairy herds
-
Stanìk, S., Zink, V., Doležal, O., and Štolc, L. (2014). Survey of preweaning dairy calf-rearing practices in Czech dairy herds. J. Dairy Sci. 97, 3973-3981. doi: 10.3168/jds.2013-7325
-
(2014)
J. Dairy Sci.
, vol.97
, pp. 3973-3981
-
-
Stanìk, S.1
Zink, V.2
Doležal, O.3
Štolc, L.4
-
52
-
-
78649472909
-
rRNA-based analysis to monitor succession of faecal bacterial communities in Holstein calves
-
Uyeno, Y., Sekiguchi, Y., and Kamagata, Y. (2010). rRNA-based analysis to monitor succession of faecal bacterial communities in Holstein calves. Lett. Appl. Microbiol. 51, 570-577. doi: 10.1111/j.1472-765X.2010.02937.x
-
(2010)
Lett. Appl. Microbiol.
, vol.51
, pp. 570-577
-
-
Uyeno, Y.1
Sekiguchi, Y.2
Kamagata, Y.3
-
53
-
-
33748346676
-
Distribution of bifidobacteria in the gastrointestinal tract of calves
-
Vlková, E., Trojanova, I., and Rada, V. (2006). Distribution of bifidobacteria in the gastrointestinal tract of calves. Folia Microbiol. (Praha) 51, 325-328. doi: 10.1007/BF02931825
-
(2006)
Folia Microbiol. (Praha)
, vol.51
, pp. 325-328
-
-
Vlková, E.1
Trojanova, I.2
Rada, V.3
-
54
-
-
50949084232
-
Occurrence of bifidobacteria in faeces of calves fed milk or a combined diet
-
Vlková, E., Rada, V., Trojanová, I., Killer, J., Smehilová, M., and Molatová, Z. (2008). Occurrence of bifidobacteria in faeces of calves fed milk or a combined diet. Arch. Anim. Nutr. 62, 359-365. doi: 10.1080/17450390802327662
-
(2008)
Arch. Anim. Nutr.
, vol.62
, pp. 359-365
-
-
Vlková, E.1
Rada, V.2
Trojanová, I.3
Killer, J.4
Smehilová, M.5
Molatová, Z.6
-
55
-
-
78751580602
-
Dominant and diet-responsive groups of bacteria within the human colonic microbiota
-
Walker, A. W., Ince, J., Duncan, S. H., Webster, L. M., Holtrop, G., Ze, X., et al. (2011). Dominant and diet-responsive groups of bacteria within the human colonic microbiota. ISME J. 5, 220-230. doi: 10.1038/ismej.2010.118
-
(2011)
ISME J.
, vol.5
, pp. 220-230
-
-
Walker, A.W.1
Ince, J.2
Duncan, S.H.3
Webster, L.M.4
Holtrop, G.5
Ze, X.6
-
56
-
-
80053618114
-
Linking long-term dietary patterns with gut microbial enterotypes
-
Wu, G. D., Chen, J., Hoffmann, C., Bittinger, K., Chen, Y. Y., Keilbaugh, S. A., et al. (2011). Linking long-term dietary patterns with gut microbial enterotypes. Science 334, 105-108. doi: 10.1126/science.1208344
-
(2011)
Science
, vol.334
, pp. 105-108
-
-
Wu, G.D.1
Chen, J.2
Hoffmann, C.3
Bittinger, K.4
Chen, Y.Y.5
Keilbaugh, S.A.6
-
57
-
-
84873688248
-
The bacterial community composition of the bovine rumen detected using pyrosequencing of 16S rRNA genes
-
Wu, S., Baldwin, R. L., Li, W., Li, C., Connor, C. L., and Li, W. (2012). The bacterial community composition of the bovine rumen detected using pyrosequencing of 16S rRNA genes. Metagenomics 1:235571. doi: 10.4303/mg/235571
-
(2012)
Metagenomics
, vol.1
, pp. 235571
-
-
Wu, S.1
Baldwin, R.L.2
Li, W.3
Li, C.4
Connor, C.L.5
Li, W.6
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