Development of colonic microflora as assessed by pyrosequencing in dairy calves fed waste milk

Journal of Dairy Science

Volumn 95, Issue 8, 2012, Pages 4519-4525

  Edrington, T S ^a   Dowd, S E ^b   Farrow, R F ^a   Hagevoort, G R ^c   Callaway, T R ^a   Anderson, R C ^a   Nisbet, D J ^a  

^a SOUTHERN PLAINS AGRICULTURAL RESEARCH CENTER   (United States)

^b Research and Testing Laboratory   (United States)

^c NEW MEXICO STATE UNIVERSITY   (United States)

Author keywords

Bacterial diversity; Pasteurization; Salmonella; Waste milk

Indexed keywords

BACTERIAL DNA;

ANIMAL; ARTICLE; BACTERIUM; CATTLE; CHEMISTRY; DNA SEQUENCE; FECES; GASTROINTESTINAL TRACT; GENETICS; ISOLATION AND PURIFICATION; MICROBIOLOGY; MILK; NEWBORN; PASTEURIZATION; PRINCIPAL COMPONENT ANALYSIS; STANDARD;

ANIMALS; ANIMALS, NEWBORN; BACTERIA; CATTLE; DNA, BACTERIAL; FECES; GASTROINTESTINAL TRACT; MILK; PASTEURIZATION; PRINCIPAL COMPONENT ANALYSIS; SEQUENCE ANALYSIS, DNA;

ANIMALIA; BACTERIA (MICROORGANISMS); BACTEROIDETES; BOS; ESCHERICHIA; FIRMICUTES; PROTEOBACTERIA; SALMONELLA; SHIGELLA; TREPONEMA;

EID: 84864045441     PISSN: 00220302     EISSN: 15253198     Source Type: Journal    
DOI: 10.3168/jds.2011-5119     Document Type: Article

References (21)

1. Blosser T.H. Economic losses from and the national research program on mastitis in the United States. J. Dairy Sci. 1979, 62:119-127.
2. Butler J.A., Sickles S.A., Johanns C.P., Rosenbusch R.F. Pasteurization of discard Mycoplasma milk used to feed calves: Thermal effects on various Mycoplasma. J. Dairy Sci. 2000, 83:2285-2288.
3. Chardavoyne J.R., Ibeawuchi J.A., Kesler E.M., Borland K.M. Waste milk from antibiotic treated cows as feed for young calves. J. Dairy Sci. 1979, 62:1285-1289.
4. Dowd S.E., Sun Y., Secor P.R., Rhoads D.D., Wolcott B.M., James G.A., Wolcott R.D. Survey of bacterial diversity in chronic wounds using pyrosequencing, DGGE, and full ribosome shotgun sequencing. BMC Microbiol. 2008, 8:43-58.
5. Drasar B.S., Barrow P.A. The bacterial flora of the normal intestine. Intestinal Microbiology 1985, 19-40. Am. Soc. Microbiol. Press, Washington, DC. B.S. Drasar, P.A. Barrow (Eds.).
6. Edrington T.S., Callaway T.R., Anderson R.C., Nisbet D.J. Prevalence of multidrug-resistant Salmonella on commercial dairies utilizing a single heifer raising facility. J. Food Prot. 2008, 71:27-34.
7. Edrington T.S., Hume M.E., Looper M.L., Schultz C.L., Fitzgerald A.C., Callaway T.R., Genovese K.J., Bischoff K.M., McReynolds J.L., Anderson R.C., Nisbet D.J. Variation in the faecal shedding of Salmonella and E. coli O157:H7 in lactating dairy cattle and examination of Salmonella genotypes using pulsed-field gel electrophoresis. Lett. Appl. Microbiol. 2004, 38:366-372.
8. Fitzgerald A.C., Edrington T.S., Looper M.L., Callaway T.R., Genovese K.J., Bischoff K.M., McReynolds J.L., Thomas J.D., Anderson R.C., Nisbet D.J. Antimicrobial susceptibility and factors affecting the shedding of E. coli O157:H7 and Salmonella in dairy cattle. Lett. Appl. Microbiol. 2003, 37:392-398.
9. Houser B.A., Donaldson S.C., Kehoe S.I., Heinrichs A.J., Jayarao B.M. A survey of bacteriological quality and the occurrence of Salmonella in raw bovine colostrums. Foodborne Pathog. Dis. 2008, 5:853-858.
10. Ishak H.D., Plowes R., Sen R., Kellner K., Meyer E., Estrada D.A., Dowd S.E., Mueller U.G. Bacterial diversity in Solenopsis invicta and Solenopsis geminata ant colonies characterized by 16S amplicon 454 pyrosequencing. Microb. Ecol. 2011, 61:821-831.
11. Jamaluddin A.A., Carpenter T.E., Hird D.W., Thurmond M.C. Economics of feeding pasteurized colostrums and pasteurized waste milk to dairy calves. J. Am. Vet. Med. Assoc. 1996, 209:751-756.
12. Kesler E.M. Feeding mastitic milk to calves: A review. J. Dairy Sci. 1981, 64:719-723.
13. Keys J.E., Pearson R.E., Weinland B.T. Performance of calves fed fermented mastitic milk, colostrums, and fresh whole milk. J. Dairy Sci. 1980, 63:1123-1127.
14. Lozupone C., Lladser M.E., Knights D., Stombaugh J., Knight R. UniFrac: An effective distance metric for microbial community comparison. ISME J. 2011, 5:169-172.
15. Pitta D.W., Pinchak W.E., Dowd S.E., Osterstock J., Gontcharova V., Youn E., Dorton K., Yoon I., Min B.R., Fulford J.D., Wickersham T.A., Malinowski D.P. Rumen bacterial diversity dynamics associated with changing from bermudagrass hay to grazed winter wheat diets. Microb. Ecol. 2010, 59:511-522.
16. Ruzante J.M., Gardner I.A., Cullor J.S., Smith W.L., Kirk J.H., Adaska J.M. Isolation of Mycobacterium avium subsp. paratuberculosis from waste milk delivered to California calf ranches. Foodborne Pathog. Dis. 2008, 5:681-686.
17. Schloss P.D., Westcott S.L., Ryabin T., Hall J.R., Hartmann M., Hollister E.B., Lesniewski R.A., Oakley B.B., Parks D.H., Robinson C.J., Sahl J.W., Stres B., Thallinger G.G., Van Horn D.J., Weber C.F. Introducing mothur: Open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl. Environ. Microbiol. 2009, 75:7537-7541.
18. Smith D.M., Snow D.E., Rees E., Zischkau A.M., Hanson J.D., Wolcott R.D., Sun Y., White J., Kumar S., Dowd S.E. Evaluation of the bacterial diversity of pressure ulcers using bTEFAP pyrosequencing. BMC Med. Genomics 2010, 3:41.
19. Stabel J.R., Hurd S., Calvente L., Rosenbusch R.F. Destruction of Mycobacterium paratuberculosis, Salmonella spp., and Mycoplasma spp. in raw milk by a commercial on-farm high-temperature, short-time pasteurizer. J. Dairy Sci. 2004, 87:2177-2183.
20. Sweeney R.W., Whitlock R.H., Rosenberger A.E. Mycobacterium paratuberculosis cultured from milk and supramammary lymph nodes of infected asymptomatic cows. J. Clin. Microbiol. 1992, 30:166-171.
21. USDA-NASS (US Department of Agriculture-National Agricultural Statistics Service). 2002. Milk cows and production. Accessed Dec. 2002. http://usda01.library.cornell.edu/usda/nass/SB1002/sb1021.pdf.