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Volumn 20, Issue 10, 2018, Pages 1246-1254

CardioClassifier: disease- and gene-specific computational decision support for clinical genome interpretation

Author keywords

bioinformatics; clinical genomics; inherited cardiac conditions; next generation sequencing; variant interpretation

Indexed keywords

ARTICLE; AUTOMATION; CARDIOCLASSIFIER; CARDIOMYOPATHY; CLINICAL ASSESSMENT TOOL; CLINICAL DECISION SUPPORT SYSTEM; CONTROLLED STUDY; GENETIC DISORDER; GENETIC SCREENING; GENETIC VARIATION; HEART DISEASE; HUMAN; MOLECULAR GENETICS; PATHOGENICITY; PRACTICE GUIDELINE; REPRODUCIBILITY; BIOLOGY; CARDIOVASCULAR MALFORMATION; DECISION SUPPORT SYSTEM; GENETICS; GENOMICS; HIGH THROUGHPUT SEQUENCING; HUMAN GENOME; MUTATION; PATHOLOGY; SOFTWARE;

EID: 85054465415     PISSN: 10983600     EISSN: 15300366     Source Type: Journal    
DOI: 10.1038/gim.2017.258     Document Type: Article
Times cited : (75)

References (25)
  • 1
    • 84959167821 scopus 로고    scopus 로고
    • Development of a comprehensive sequencing assay for inherited cardiac condition genes
    • Pua CJ, Bhalshankar J, Miao K et al. Development of a comprehensive sequencing assay for inherited cardiac condition genes. J Cardiovasc Transl Res 2016;9:3–11
    • (2016) J Cardiovasc Transl Res , vol.9 , pp. 3-11
    • Pua, C.J.1    Bhalshankar, J.2    Miao, K.3
  • 2
    • 84928209346 scopus 로고    scopus 로고
    • Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology
    • Richards S, Aziz N, Bale S et al. Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology. Genet Med 2015;17:405–423
    • (2015) Genet Med , vol.17 , pp. 405-423
    • Richards, S.1    Aziz, N.2    Bale, S.3
  • 3
    • 85021202732 scopus 로고    scopus 로고
    • Clinical laboratories collaborate to resolve differences in variant interpretations submitted to ClinVar
    • Harrison SM, Dolinsky JS, Johnson AEK et al. Clinical laboratories collaborate to resolve differences in variant interpretations submitted to ClinVar. Genet Med 2017;19:1096–1104
    • (2017) Genet Med , vol.19 , pp. 1096-1104
    • Harrison, S.M.1    Dolinsky, J.S.2    Johnson, A.E.K.3
  • 4
    • 84930526399 scopus 로고    scopus 로고
    • ClinGen the clinical genome resource
    • COI: 1:CAS:528:DC%2BC2MXhtFyrsbfI
    • Rehm HL, Berg JS, Brooks LD et al. ClinGen the clinical genome resource. N Engl J Med 2015;372:2235–2242
    • (2015) N Engl J Med , vol.372 , pp. 2235-2242
    • Rehm, H.L.1    Berg, J.S.2    Brooks, L.D.3
  • 5
    • 85009288462 scopus 로고    scopus 로고
    • ClinGen pathogenicity calculator: a configurable system for assessing pathogenicity of genetic variants
    • Patel RY, Shah N, Jackson AR et al. ClinGen pathogenicity calculator: a configurable system for assessing pathogenicity of genetic variants. Genome Med 2017;9::3
    • (2017) Genome Med , vol.9 , pp. 3
    • Patel, R.Y.1    Shah, N.2    Jackson, A.R.3
  • 6
    • 84994099363 scopus 로고    scopus 로고
    • An openly available online tool for implementing the ACMG/AMP standards and guidelines for the interpretation of sequence variants
    • COI: 1:CAS:528:DC%2BC28XhvVehtr7P
    • Kleinberger J, Maloney KA, Pollin TI, Jeng LJB. An openly available online tool for implementing the ACMG/AMP standards and guidelines for the interpretation of sequence variants. Genet Med 2016;18:1165–1165
    • (2016) Genet Med , vol.18 , pp. 1165
    • Kleinberger, J.1    Maloney, K.A.2    Pollin, T.I.3    Jeng, L.J.B.4
  • 7
    • 85010878258 scopus 로고    scopus 로고
    • InterVar: clinical interpretation of genetic variants by the 2015 ACMG-AMP guidelines
    • COI: 1:CAS:528:DC%2BC2sXhs1KgtbY%3D
    • Li Q, Wang K. InterVar: clinical interpretation of genetic variants by the 2015 ACMG-AMP guidelines. Am J Hum Genet 2017;100:267–280
    • (2017) Am J Hum Genet , vol.100 , pp. 267-280
    • Li, Q.1    Wang, K.2
  • 8
    • 85028908595 scopus 로고    scopus 로고
    • Using high-resolution variant frequencies to empower clinical genome interpretation
    • Whiffin N, Minikel E, Walsh R et al. Using high-resolution variant frequencies to empower clinical genome interpretation. Genet Med 2017;19:1151–1158
    • (2017) Genet Med , vol.19 , pp. 1151-1158
    • Whiffin, N.1    Minikel, E.2    Walsh, R.3
  • 9
    • 85011933920 scopus 로고    scopus 로고
    • Reassessment of Mendelian gene pathogenicity using 7,855 cardiomyopathy cases and 60,706 reference samples
    • Walsh R, Thomson KL, Ware JS et al. Reassessment of Mendelian gene pathogenicity using 7,855 cardiomyopathy cases and 60,706 reference samples. Genet Med 2016;19:192–203
    • (2016) Genet Med , vol.19 , pp. 192-203
    • Walsh, R.1    Thomson, K.L.2    Ware, J.S.3
  • 10
    • 84982253941 scopus 로고    scopus 로고
    • Analysis of protein-coding genetic variation in 60,706 humans
    • COI: 1:CAS:528:DC%2BC28XhtlOnsbbP
    • Lek M, Karczewski KJ, Minikel EV et al. Analysis of protein-coding genetic variation in 60,706 humans. Nature 2016;536:285–291
    • (2016) Nature , vol.536 , pp. 285-291
    • Lek, M.1    Karczewski, K.J.2    Minikel, E.V.3
  • 11
    • 84988449067 scopus 로고    scopus 로고
    • Integrated allelic, transcriptional, and phenomic dissection of the cardiac effects of titin truncations in health and disease
    • Roberts AM, Ware JS, Herman DS et al. Integrated allelic, transcriptional, and phenomic dissection of the cardiac effects of titin truncations in health and disease. Sci Transl Med 2015;7:270ra6–270ra6
    • (2015) Sci Transl Med , vol.7 , pp. 270ra6
    • Roberts, A.M.1    Ware, J.S.2    Herman, D.S.3
  • 12
    • 84863877251 scopus 로고    scopus 로고
    • Paralogous annotation of disease-causing variants in long QT syndrome genes
    • COI: 1:CAS:528:DC%2BC38XhtVeju7bF
    • Ware JS, Walsh R, Cunningham F, Birney E, Cook SA. Paralogous annotation of disease-causing variants in long QT syndrome genes. Hum Mutat 2012;33:1188–1191
    • (2012) Hum Mutat , vol.33 , pp. 1188-1191
    • Ware, J.S.1    Walsh, R.2    Cunningham, F.3    Birney, E.4    Cook, S.A.5
  • 13
    • 84890860005 scopus 로고    scopus 로고
    • Paralogue annotation identifies novel pathogenic variants in patients with Brugada syndrome and catecholaminergic polymorphic ventricular tachycardia
    • Walsh R, Peters NS, Cook SA, Ware JS. Paralogue annotation identifies novel pathogenic variants in patients with Brugada syndrome and catecholaminergic polymorphic ventricular tachycardia. J Med Genet 2013;51:35–44
    • (2013) J Med Genet , vol.51 , pp. 35-44
    • Walsh, R.1    Peters, N.S.2    Cook, S.A.3    Ware, J.S.4
  • 14
    • 84937759497 scopus 로고    scopus 로고
    • Enhancing the predictive power of mutations in the C-terminus of the KCNQ1-encoded kv7.1 voltage-gated potassium channel
    • Kapplinger JD, Tseng AS, Salisbury BA et al. Enhancing the predictive power of mutations in the C-terminus of the KCNQ1-encoded kv7.1 voltage-gated potassium channel. J Cardiovasc Transl Res 2015;8:187–197
    • (2015) J Cardiovasc Transl Res , vol.8 , pp. 187-197
    • Kapplinger, J.D.1    Tseng, A.S.2    Salisbury, B.A.3
  • 15
    • 84939564961 scopus 로고    scopus 로고
    • Enhanced classification of Brugada syndrome-associated and long-QT syndrome-associated genetic variants in the SCN5A-encoded nav1.5 cardiac sodium channel
    • COI: 1:CAS:528:DC%2BC2MXhsFGltb%2FI
    • Kapplinger JD, Giudicessi JR, Ye D et al. Enhanced classification of Brugada syndrome-associated and long-QT syndrome-associated genetic variants in the SCN5A-encoded nav1.5 cardiac sodium channel. Circ Cardiovasc Genet 2015;8:582–595
    • (2015) Circ Cardiovasc Genet , vol.8 , pp. 582-595
    • Kapplinger, J.D.1    Giudicessi, J.R.2    Ye, D.3
  • 16
    • 84973338712 scopus 로고    scopus 로고
    • The Ensembl Variant Effect Predictor
    • McLaren W, Gil L, Hunt SE et al. The Ensembl Variant Effect Predictor. Genome Biol 2016;17:122
    • (2016) Genome Biol , vol.17 , pp. 122
    • McLaren, W.1    Gil, L.2    Hunt, S.E.3
  • 17
    • 84891809093 scopus 로고    scopus 로고
    • ClinVar: public archive of relationships among sequence variation and human phenotype
    • Landrum MJ, Lee JM, Riley GR et al. ClinVar: public archive of relationships among sequence variation and human phenotype. Nucleic Acids Res 2013;42:D980–D985
    • (2013) Nucleic Acids Res , vol.42 , pp. D980-D985
    • Landrum, M.J.1    Lee, J.M.2    Riley, G.R.3
  • 19
    • 85011303767 scopus 로고    scopus 로고
    • The ExAC browser: displaying reference data information from over 60 000 exomes
    • Karczewski KJ, Weisburd B, Thomas B et al. The ExAC browser: displaying reference data information from over 60 000 exomes. Nucleic Acids Res 2016;45:D840–D845
    • (2016) Nucleic Acids Res , vol.45 , pp. D840-D845
    • Karczewski, K.J.1    Weisburd, B.2    Thomas, B.3
  • 20
    • 84946506206 scopus 로고    scopus 로고
    • Results of clinical genetic testing of 2,912 probands with hypertrophic cardiomyopathy: expanded panels offer limited additional sensitivity
    • Alfares AA, Kelly MA, McDermott G et al. Results of clinical genetic testing of 2,912 probands with hypertrophic cardiomyopathy: expanded panels offer limited additional sensitivity. Genet Med 2015;17:880–888
    • (2015) Genet Med , vol.17 , pp. 880-888
    • Alfares, A.A.1    Kelly, M.A.2    McDermott, G.3
  • 21
    • 84901449140 scopus 로고    scopus 로고
    • The landscape of genetic variation in dilated cardiomyopathy as surveyed by clinical DNA sequencing
    • COI: 1:CAS:528:DC%2BC2cXhtlahsLfM
    • Pugh TJ, Kelly MA, Gowrisankar S et al. The landscape of genetic variation in dilated cardiomyopathy as surveyed by clinical DNA sequencing. Genet Med 2014;16:601–608
    • (2014) Genet Med , vol.16 , pp. 601-608
    • Pugh, T.J.1    Kelly, M.A.2    Gowrisankar, S.3
  • 22
    • 68949209933 scopus 로고    scopus 로고
    • Spectrum and prevalence of mutations from the first 2,500 consecutive unrelated patients referred for the FAMILION long QT syndrome genetic test
    • Kapplinger JD, Tester DJ, Salisbury BA et al. Spectrum and prevalence of mutations from the first 2,500 consecutive unrelated patients referred for the FAMILION long QT syndrome genetic test. Heart Rhythm. 2009;6:1297–1303
    • (2009) Heart Rhythm. , vol.6 , pp. 1297-1303
    • Kapplinger, J.D.1    Tester, D.J.2    Salisbury, B.A.3
  • 23
    • 72449147774 scopus 로고    scopus 로고
    • An international compendium of mutations in the SCN5A-encoded cardiac sodium channel in patients referred for Brugada syndrome genetic testing
    • Kapplinger JD, Tester DJ, Alders M et al. An international compendium of mutations in the SCN5A-encoded cardiac sodium channel in patients referred for Brugada syndrome genetic testing. Heart Rhythm 2010;7:33–46
    • (2010) Heart Rhythm , vol.7 , pp. 33-46
    • Kapplinger, J.D.1    Tester, D.J.2    Alders, M.3
  • 24
    • 85055940947 scopus 로고    scopus 로고
    • Adaptation and validation of the ACMG/AMP variant classification framework for MYH7-associated inheritedcardiomyopathies: Recommendations by ClinGen’s Inherited Cardiomyopathy Expert Panel
    • Jan, [Epub ahead of print]
    • Kelly MA, Caleshu C, Morales A et al. Adaptation and validation of the ACMG/AMP variant classification framework for MYH7-associated inheritedcardiomyopathies: recommendations by ClinGen’s Inherited Cardiomyopathy Expert Panel. Genet Med 2017; Jan 4 [Epub ahead of print]
    • (2017) Genet Med
    • Kelly, M.A.1    Caleshu, C.2    Morales, A.3
  • 25
    • 84989958164 scopus 로고    scopus 로고
    • Performance of ACMG-AMP variant-interpretation guidelines among nine laboratories in the Clinical Sequencing Exploratory Research Consortium
    • COI: 1:CAS:528:DC%2BC28XptlCns78%3D
    • Amendola LM, Jarvik GP, Leo MC et al. Performance of ACMG-AMP variant-interpretation guidelines among nine laboratories in the Clinical Sequencing Exploratory Research Consortium. Am J Hum Genet 2016;99:247
    • (2016) Am J Hum Genet , vol.99 , pp. 247
    • Amendola, L.M.1    Jarvik, G.P.2    Leo, M.C.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.