Complete genome sequences of two acetic acid-producing acetobacter pasteurianus strains (subsp. ascendens LMG 1590T and subsp. paradoxus LMG 1591 T )

Frontiers in Bioengineering and Biotechnology

Volumn 5, Issue MAY, 2017, Pages 33-

  Jia, Baolei ^a,b   Chun, Byung Hee ^a   Cho, Ga Youn ^a   Kim, Kyung Hyun ^a   Moon, Ji Young ^c   Yeo, Soo Hwan ^c   Jeon, Che Ok ^a  

^a Chung Ang University   (South Korea)

^b QILU UNIVERSITY OF TECHNOLOGY   (China)

^c National Institute of Animal Science   (South Korea)

Author keywords

Acetic acid bacteria; Acetobacter pasteurianus; Comparative genomics; Genomic sequence; Vinegar

Indexed keywords

EID: 85049805949     PISSN: None     EISSN: 22964185     Source Type: Journal    
DOI: 10.3389/fbioe.2017.00033     Document Type: Article

References (18)

1. Azuma, Y., Hosoyama, A., Matsutani, M., Furuya, N., Horikawa, H., Harada, T., et al. (2009). Whole-genome analyses reveal genetic instability of Acetobacter pasteurianus. Nucleic Acids Res. 37, 5768-5783. doi: 10.1093/nar/gkp612
2. Darling, A. E., Mau, B., and Perna, N. T. (2010). progressiveMauve: multiple genome alignment with gene gain, loss and rearrangement. PLoS ONE 5:e11147. doi:10.1371/journal.pone.0011147
3. Gullo, M., Caggia, C., De Vero, L., and Giudici, P. (2006). Characterization of acetic acid bacteria in "traditional balsamic vinegar". Int. J. Food Microbiol. 106, 209-212. doi:10.1016/j.ijfoodmicro.2005.06.024
4. Illeghems, K., De Vuyst, L., and Weckx, S. (2013). Complete genome sequence and comparative analysis of Acetobacter pasteurianus 386B, a strain well-adapted to the cocoa bean fermentation ecosystem. BMC Genomics 14:526. doi:10.1186/1471-2164-14-526
5. Käll, L., Krogh, A., and Sonnhammer, E. L. L. (2004). A combined transmembrane topology and signal peptide prediction method. J. Mol. Biol. 338, 1027-1036. doi:10.1016/j.jmb.2004.03.016
6. Kim, B. S., Yi, H., Chun, J., and Cha, C. J. (2014). Genome sequence of type strain of Staphylococcus aureus subsp. aureus. Gut Pathog. 6, 6-6. doi:10.1186/1757-4749-6-6
7. Li, S., Li, P., Feng, F., and Luo, L.-X. (2015). Microbial diversity and their roles in the vinegar fermentation process. Appl. Microbiol. Biotechnol. 99, 4997-5024. doi:10.1007/s00253-015-6659-1
8. Matsutani, M., Hirakawa, H., Yakushi, T., and Matsushita, K. (2011). Genome-wide phylogenetic analysis of Gluconobacter, Acetobacter, and Gluconacetobacter. FEMS Microbiol. Lett. 315, 122-128. doi:10.1111/j.1574-6968.2010.02180.x
9. Raspor, P., and Goranovic, D. (2008). Biotechnological applications of acetic acid bacteria. Crit. Rev. Biotechnol. 28, 101-124. doi:10.1080/07388550802046749
10. Robert, X., and Gouet, P. (2014). Deciphering key features in protein structures with the new ENDscript server. Nucleic Acids Res. 42, W320-W324. doi:10.1093/nar/gku316
11. Saichana, N., Matsushita, K., Adachi, O., Frébort, I., and Frebortova, J. (2015). Acetic acid bacteria: a group of bacteria with versatile biotechnological applications. Biotechnol. Adv. 33, 1260-1271. doi:10.1016/j.biotechadv.2014.12.001
12. Seemann, T. (2014). Prokka: rapid prokaryotic genome annotation. Bioinformatics 30, 2068-2069. doi:10.1093/bioinformatics/btu153
13. Sievers, F., and Higgins, D. G. (2014). Clustal Omega, accurate alignment of very large numbers of sequences. Methods Mol. Biol. 1079, 105-116. doi:10.1007/978-1-62703-646-7_6
14. Sõukand, R., Pieroni, A., Biró, M., Dénes, A., Dogan, Y., Hajdari, A., et al. (2015). An ethnobotanical perspective on traditional fermented plant foods and beverages in Eastern Europe. J. Ethnopharmacol. 170, 284-296. doi:10.1016/j.jep.2015.05.018
15. Trcek, J., Toyama, H., Czuba, J., Misiewicz, A., and Matsushita, K. (2006). Correlation between acetic acid resistance and characteristics of PQQ-dependent ADH in acetic acid bacteria. Appl. Microbiol. Biotechnol. 70, 366-373. doi:10.1007/s00253-005-0073-z
16. Wang, B., Shao, Y., Chen, T., Chen, W., and Chen, F. (2015). Global insights into acetic acid resistance mechanisms and genetic stability of Acetobacter pasteurianus strains by comparative genomics. Sci. Rep. 5, 18330. doi:10.1038/srep18330
17. Xia, Z.-X., Dai, W.-W., Zhang, Y.-F., White, S. A., Boyd, G. D., and Mathews, S. F. (1996). Determination of the gene sequence and the three-dimensional structure at 2.4 Å resolution of methanol dehydrogenase from MethylophilusW3A1. J. Mol. Biol. 259, 480-501. doi:10.1006/jmbi.1996.0334
18. Zheng, Y., Zhang, K., Su, G., Han, Q., Shen, Y., and Wang, M. (2015). The evolutionary response of alcohol dehydrogenase and aldehyde dehydrogenases of Acetobacter pasteurianus CGMCC 3089 to ethanol adaptation. Food Sci. Biotechnol. 24, 133-140. doi:10.1007/s10068-015-0019-x