Genomic Insights into Zika Virus Emergence and Spread

Cell

Volumn 172, Issue 6, 2018, Pages 1160-1162

  Grubaugh, Nathan D ^a   Faria, Nuno R ^b   Andersen, Kristian G ^a   Pybus, Oliver G ^b  

^a SCRIPPS RESEARCH INSTITUTE   (United States)

^b UNIVERSITY OF OXFORD   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

VIRUS RNA;

DISEASE SURVEILLANCE; EPIDEMIC; GENOME ANALYSIS; HUMAN; INFECTION RISK; MATHEMATICAL MODEL; NONHUMAN; NOTE; PHENOTYPIC VARIATION; PHYLOGENY; PRIORITY JOURNAL; SEQUENCE ANALYSIS; VIRAL PHENOMENA AND FUNCTIONS; VIRUS DETECTION; VIRUS EMERGENCE; VIRUS GENOME; VIRUS MUTATION; VIRUS PATHOGENESIS; VIRUS TRANSMISSION; ZIKA FEVER; ZIKA VIRUS; BRAZIL; COMMUNICABLE DISEASE; GENETICS; GENOMICS; GEOGRAPHY; PATHOGENICITY; PROCEDURES; TRANSMISSION; VIROLOGY; WESTERN HEMISPHERE;

AMERICAS; BRAZIL; COMMUNICABLE DISEASES, EMERGING; EPIDEMICS; GENOME, VIRAL; GENOMICS; GEOGRAPHY; HUMANS; ZIKA VIRUS; ZIKA VIRUS INFECTION;

EID: 85043254543     PISSN: 00928674     EISSN: 10974172     Source Type: Journal    
DOI: 10.1016/j.cell.2018.02.027     Document Type: Note

References (15)

1. Diehl, W.E., Lin, A.E., Grubaugh, N.D., Carvalho, L.M., Kim, K., Kyawe, P.P., McCauley, S.M., Donnard, E., Kucukural, A., McDonel, P., et al. Ebola virus glycoprotein with increased infectivity dominated the 2013-2016 epidemic. Cell 167 (2016), 1088–1098.e6.
2. Dudas, G., Carvalho, L.M., Bedford, T., Tatem, A.J., Baele, G., Faria, N.R., Park, D.J., Ladner, J.T., Arias, A., Asogun, D., et al. Virus genomes reveal factors that spread and sustained the Ebola epidemic. Nature 544 (2017), 309–315.
3. Faria, N.R., Azevedo, R.D.S.D.S., Kraemer, M.U.G., Souza, R., Cunha, M.S., Hill, S.C., Thézé, J., Bonsall, M.B., Bowden, T.A., Rissanen, I., et al. Zika virus in the Americas: early epidemiological and genetic findings. Science 352 (2016), 345–349.
4. Faria, N.R., Quick, J., Claro, I.M., Thézé, J., de Jesus, J.G., Giovanetti, M., Kraemer, M.U.G., Hill, S.C., Black, A., da Costa, A.C., et al. Establishment and cryptic transmission of Zika virus in Brazil and the Americas. Nature 546 (2017), 406–410.
5. Grubaugh, N.D., Ladner, J.T., Kraemer, M.U.G., Dudas, G., Tan, A.L., Gangavarapu, K., Wiley, M.R., White, S., Thézé, J., Magnani, D.M., et al. Genomic epidemiology reveals multiple introductions of Zika virus into the United States. Nature 546 (2017), 401–405.
6. Kindhauser, M.K., Allen, T., Frank, V., Santhana, R.S., Dye, C., Zika: the origin and spread of a mosquito-borne virus. Bull. World Health Organ. 94 (2016), 675–686C.
7. Lessler, J., Chaisson, L.H., Kucirka, L.M., Bi, Q., Grantz, K., Salje, H., Carcelen, A.C., Ott, C.T., Sheffield, J.S., Ferguson, N.M., et al. Assessing the global threat from Zika virus. Science, 353, 2016, aaf8160.
8. Liu, Y., Liu, J., Du, S., Shan, C., Nie, K., Zhang, R., Li, X.-F., Zhang, R., Wang, T., Qin, C.-F., et al. Evolutionary enhancement of Zika virus infectivity in Aedes aegypti mosquitoes. Nature 545 (2017), 482–486.
9. Metsky, H.C., Matranga, C.B., Wohl, S., Schaffner, S.F., Freije, C.A., Winnicki, S.M., West, K., Qu, J., Baniecki, M.L., Gladden-Young, A., et al. Zika virus evolution and spread in the Americas. Nature 546 (2017), 411–415.
10. Nunes, M.R.T., Faria, N.R., de Vasconcelos, J.M., Golding, N., Kraemer, M.U.G., de Oliveira, L.F., Azevedo, Rdo.S., da Silva, D.E., da Silva, E.V., da Silva, S.P., et al. Emergence and potential for spread of Chikungunya virus in Brazil. BMC Med., 13, 2015, 10.1186/s12916-015-0348-x.
11. de Oliveira, W.K., de França, G.V.A., Carmo, E.H., Duncan, B.B., de Souza Kuchenbecker, R., Schmidt, M.I., Infection-related microcephaly after the 2015 and 2016 Zika virus outbreaks in Brazil: a surveillance-based analysis. Lancet 390 (2017), 861–870.
12. Quick, J., Grubaugh, N.D., Pullan, S.T., Claro, I.M., Smith, A.D., Gangavarapu, K., Oliveira, G., Robles-Sikisaka, R., Rogers, T.F., Beutler, N.A., et al. Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples. Nat. Protoc. 12 (2017), 1261–1276.
13. Souza, W.V., Araújo, T.V., Albuquerque, Mde.F., Braga, M.C., Ximenes, R.A., Miranda-Filho, Dde.B., Bezerra, L.C., Dimech, G.S., Carvalho, P.I., Assunção, R.S., et al. Microcephaly in Pernambuco State, Brazil: epidemiological characteristics and evaluation of the diagnostic accuracy of cutoff points for reporting suspected cases. Cad. Saude Publica, 32, 2016, e00017216.
14. Stadler, T., Kühnert, D., Bonhoeffer, S., Drummond, A.J., Birth-death skyline plot reveals temporal changes of epidemic spread in HIV and hepatitis C virus (HCV). Proc. Natl. Acad. Sci. USA 110 (2013), 228–233.
15. Yuan, L., Huang, X.-Y., Liu, Z.-Y., Zhang, F., Zhu, X.-L., Yu, J.-Y., Ji, X., Xu, Y.-P., Li, G., Li, C., et al. A single mutation in the prM protein of Zika virus contributes to fetal microcephaly. Science 358 (2017), 933–936.