Nontoxic, double-deletion-mutant rabies viral vectors for retrograde targeting of projection neurons

Nature Neuroscience

Volumn 21, Issue 4, 2018, Pages 638-646

  Chatterjee, Soumya ^a   Sullivan, Heather A ^b   MacLennan, Bryan J ^a   Xu, Ran ^b   Hou, YuanYuan ^b   Lavin, Thomas K ^b   Lea, Nicholas E ^b   Michalski, Jacob E ^b   Babcock, Kelsey R ^b   Dietrich, Stephan ^b   Matthews, Gillian A ^c   Beyeler, Anna ^c   Calhoon, Gwendolyn G ^c   Glober, Gordon ^c   Whitesell, Jennifer D ^a   Yao, Shenqin ^a   Cetin, Ali ^a   Harris, Julie A ^a   Zeng, Hongkui ^a   Tye, Kay M ^c   Reid, R Clay ^a   Wickersham, Ian R ^b   more..

^a ALLEN INSTITUTE FOR BRAIN SCIENCE   (United States)

^b MASSACHUSETTS INSTITUTE OF TECHNOLOGY   (United States)

^c MASSACHUSETTS INSTITUTE OF TECHNOLOGY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DOUBLE DELETION MUTANT RABIES VIRUS VECTOR; UNCLASSIFIED DRUG; VIRUS VECTOR; PHOTOPROTEIN;

ADULT; ANIMAL EXPERIMENT; ANIMAL TISSUE; ARTICLE; CELL TRACKING; CELLULAR PARAMETERS; CONTROLLED STUDY; CYTOTOXICITY; GENE DELETION; GENE EXPRESSION; GENETIC TRANSDUCTION; HUMAN; HUMAN CELL; IMAGING AND DISPLAY; IN VIVO STUDY; MOUSE; NERVE PROJECTION; NONHUMAN; PRIORITY JOURNAL; PROTEIN EXPRESSION; RAT; RETROGRADE TARGETING; TRANSGENE; TWO PHOTON FUNCTIONAL IMAGING; TWO PHOTON STRUCTURAL IMAGING; VIRUS GENE; VIRUS POLYMERASE GENE; WHOLE CELL PATCH CLAMP; ACTION POTENTIAL; AGE; ANALYSIS OF VARIANCE; ANIMAL; BRAIN CORTEX; CYTOLOGY; FEMALE; GENE VECTOR; GENETICS; HEK293 CELL LINE; LONG EVANS RAT; MALE; METABOLISM; NERVE CELL; NERVE TRACT; OPTOGENETICS; PATCH CLAMP TECHNIQUE; PHYSIOLOGY; THALAMUS; TRANSGENIC MOUSE;

ACTION POTENTIALS; AGE FACTORS; ANALYSIS OF VARIANCE; ANIMALS; CEREBRAL CORTEX; FEMALE; GENETIC VECTORS; HEK293 CELLS; HUMANS; LUMINESCENT PROTEINS; MALE; MICE; MICE, TRANSGENIC; NEURAL PATHWAYS; NEURONS; OPTOGENETICS; PATCH-CLAMP TECHNIQUES; RATS; RATS, LONG-EVANS; SEQUENCE DELETION; THALAMUS; TRANSDUCTION, GENETIC;

EID: 85042850976     PISSN: 10976256     EISSN: 15461726     Source Type: Journal    
DOI: 10.1038/s41593-018-0091-7     Document Type: Article

References (76)

1. Wickersham, I. R., Finke, S., Conzelmann, K. K. & Callaway, E. M. Nat. Methods 4, 47–49 (2007).
2. Wickersham, I. R. et al. Neuron 53, 639–647 (2007).
3. Wall, N. R., Wickersham, I. R., Cetin, A., De La Parra, M. & Callaway, E. M. Proc. Natl. Acad. Sci. USA 107, 21848–21853 (2010).
4. Marshel, J. H., Mori, T., Nielsen, K. J. & Callaway, E. M. Neuron 67, 562–574 (2010).
5. Rancz, E. A. et al. Nat. Neurosci. 14, 527–532 (2011).
6. Watabe-Uchida, M., Zhu, L., Ogawa, S. K., Vamanrao, A. & Uchida, N. Neuron 74, 858–873 (2012).
7. Wertz, A. et al. Science 349, 70–74 (2015).
8. Tian, J. et al. Neuron 91, 1374–1389 (2016).
9. Wallace, M. L. et al. Neuron 94, 138–152.e5 (2017).
10. Rompani, S. B. et al. Neuron 93, 1519 (2017).
11. Liu, K. et al. Nature 548, 582–587 (2017).
12. Chung, S. et al. Nature 545, 477–481 (2017).
13. Dölen, G., Darvishzadeh, A., Huang, K. W. & Malenka, R. C. Nature 501, 179–184 (2013).
14. Kiritani, T., Wickersham, I. R., Seung, H. S. & Shepherd, G. M. J. Neurosci. 32, 4992–5001 (2012).
15. Kress, G. J. et al. Nat. Neurosci. 16, 665–667 (2013).
16. Namburi, P. et al. Nature 520, 675–678 (2015).
17. Rajasethupathy, P. et al. Nature 526, 653–659 (2015).
18. Yamawaki, N., Suter, B. A., Wickersham, I. R. & Shepherd, G. M. Cold Spring Harb. Protoc. 2016, t090084 (2016).
19. Shin Yim, Y. et al. Nature 549, 482–487 (2017).
20. Osakada, F. et al. Neuron 71, 617–631 (2011).
21. Gong, Y. et al. Science 350, 1361–1366 (2015).
22. Roland, B. et al. eLife 10.7554/eLife.16335.001 (2016).
23. Wickersham, I. R., Sullivan, H. A. & Seung, H. S. Nat. Commun. 4, 2332 (2013).
24. Reardon, T. R. et al. Neuron 89, 711–724 (2016).
25. Ciabatti, E., González-Rueda, A., Mariotti, L., Morgese, F. & Tripodi, M. Cell 170, 382–392.e14 (2017).
26. Albertini, A. A., Ruigrok, R. W. & Blondel, D. Adv. Virus. Res. 79, 1–22 (2011).
27. Madore, H. P. & England, J. M. J. Virol. 22, 102–112 (1977).
28. Schnell, M. J., McGettigan, J. P., Wirblich, C. & Papaneri, A. Nat. Rev. Microbiol. 8, 51–61 (2010).
29. Cormack, B. P., Valdivia, R. H. & Falkow, S. Gene 173, 33–38 (1996).
30. Sauer, B. & Henderson, N. Proc. Natl. Acad. Sci. USA 85, 5166–5170 (1988).
31. Sadowski, P. D. Prog. Nucleic Acid Res. Mol. Biol. 51, 53–91 (1995).
32. Raymond, C. S. & Soriano, P. PLoS ONE 2, e162 (2007).
33. Shaner, N. C. et al. Nat. Biotechnol. 22, 1567–1572 (2004).
34. Fenno, L. E. et al. Nat. Methods 11, 763–772 (2014).
35. Schwarz, L. A. et al. Nature 524, 88–92 (2015).
36. Gomme, E. A., Wirblich, C., Addya, S., Rall, G. F. & Schnell, M. J. PLoS. Pathog. 8, e1002971 (2012).
37. Ohki, K., Chung, S., Ch’ng, Y. H., Kara, P. & Reid, R. C. Nature 433, 597–603 (2005).
38. Chen, T. W. et al. Nature 499, 295–300 (2013).
39. Ohki, K. & Reid, R. C. Cold Spring Harb. Protoc. 2014, 402–416 (2014).
40. Soudais, C., Laplace-Builhe, C., Kissa, K. & Kremer, E. J. FASEB J. 15, 2283–2285 (2001).
41. Tervo, D. G. et al. Neuron 92, 372–382 (2016).
42. Senn, V. et al. Neuron 81, 428–437 (2014).
43. Kohara, K. et al. Nat. Neurosci. 17, 269–279 (2014).
44. Xu, C. et al. Cell 167, 961–972.e16 (2016).
45. Schwarz, L. A. & Luo, L. Curr. Biol. 25, R1051–R1056 (2015).
46. Wu, Z., Yang, H. & Colosi, P. Mol. Ther. 18, 80–86 (2010).
47. Dong, B., Nakai, H. & Xiao, W. Mol. Ther. 18, 87–92 (2010).
48. Finke, S., Cox, J. H. & Conzelmann, K. K. J. Virol. 74, 7261–7269 (2000).
49. Tian, L. et al. Nat. Methods 6, 875–881 (2009).
50. Finke, S. & Conzelmann, K. K. J. Virol. 73, 3818–3825 (1999).
51. Finke, S., Mueller-Waldeck, R. & Conzelmann, K. K. J. Gen. Virol. 84, 1613–1621 (2003).
52. Paterson, R. G., Russell, C. J. & Lamb, R. A. Virology 270, 17–30 (2000).
53. Matsuda, T. & Cepko, C. L. Proc. Natl. Acad. Sci. USA 101, 16–22 (2004).
54. Marr, R. A. et al. J. Mol. Neurosci. 22, 5–11 (2004).
55. Niwa, H., Yamamura, K. & Miyazaki, J. Gene 108, 193–199 (1991).
56. Atasoy, D., Aponte, Y., Su, H. H. & Sternson, S. M. J. Neurosci. 28, 7025–7030 (2008).
57. Shaner, N. C. et al. Nat. Methods 5, 545–551 (2008).
58. Koresawa, Y. et al. J. Biochem. 127, 367–372 (2000).
59. Wickersham, I. R., Sullivan, H. A. & Seung, H. S. Nat. Protoc. 5, 595–606 (2010).
60. Wickersham, I. R. & Sullivan, H. A. Cold Spring Harb. Protoc. 2015, 375–385 (2015).
61. Wickersham, I. R. et al. Cold Spring Harb. Protoc. 2015, 368–374 (2015).
62. Madisen, L. et al. Nat. Neurosci. 13, 133–140 (2010).
63. Madisen, L. et al. Neuron 85, 942–958 (2015).
64. Tallquist, M. D. & Soriano, P. Genesis 26, 113–115 (2000).
65. Mayford, M. et al. Science 274, 1678–1683 (1996).
66. Husson, T. R., Mallik, A. K., Zhang, J. X. & Issa, N. P. J. Neurosci. 27, 8665–8675 (2007).
67. Andermann, M. L., Kerlin, A. M., Roumis, D. K., Glickfeld, L. L. & Reid, R. C. Neuron 72, 1025–1039 (2011).
68. Pologruto, T. A., Sabatini, B. L. & Svoboda, K. Biomed. Eng. Online 2, 13 (2003).
69. Thévenaz, P., Ruttimann, U. E. & Unser, M. IEEE Trans. Image. Process. 7, 27–41 (1998).
70. Peng, H., Bria, A., Zhou, Z., Iannello, G. & Long, F. Nat. Protoc. 9, 193–208 (2014).
71. Peirce, J. W. J. Neurosci. Methods 162, 8–13 (2007).
72. Pnevmatikakis, E. A. et al. Neuron 89, 285–299 (2016).
73. Hnasko, T. S. et al. Proc. Natl. Acad. Sci. USA 103, 8858–8863 (2006).
74. Garrett, M. E., Nauhaus, I., Marshel, J. H. & Callaway, E. M. J. Neurosci. 34, 12587–12600 (2014).
75. Allen Institute for Brain Science. Allen Mouse Brain Connectivity Atlas Overview http://help.brain-map.org/download/attachments/2818171/Connectivity_Overview.pdf (2017).
76. Oh, S. W. et al. Nature 508, 207–214 (2014).