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Volumn 627, Issue , 2018, Pages 1315-1326

Global proteomic responses of Escherichia coli and evolution of biomarkers under tetracycline stress at acid and alkaline conditions

Author keywords

Antibiotic resistance; Escherichia coli; Evolution; iTRAQ; Proteomic analysis; Tetracycline

Indexed keywords

ALKYLATION; AMINO ACIDS; ANTIBIOTICS; BIOMARKERS; CARBOXYLATION; ESCHERICHIA COLI; METABOLISM; METABOLITES; PHOSPHOLIPIDS; PHYSIOLOGY; PROTEINS;

EID: 85041424000     PISSN: 00489697     EISSN: 18791026     Source Type: Journal    
DOI: 10.1016/j.scitotenv.2018.01.342     Document Type: Article
Times cited : (10)

References (39)
  • 1
    • 85018563532 scopus 로고    scopus 로고
    • Biased partitioning of the multidrug efflux pump AcrAB-TolC underlies long-lived phenotypic heterogeneity
    • Bergmiller, T., Andersson, A.M.C., Tomasek, K., Balleza, E., Kiviet, D.J., Hauschild, R., et al. Biased partitioning of the multidrug efflux pump AcrAB-TolC underlies long-lived phenotypic heterogeneity. Science 356 (2017), 309–311.
    • (2017) Science , vol.356 , pp. 309-311
    • Bergmiller, T.1    Andersson, A.M.C.2    Tomasek, K.3    Balleza, E.4    Kiviet, D.J.5    Hauschild, R.6
  • 2
    • 0017184389 scopus 로고
    • Rapid and sensitive method for quantitation of microgram quantities of protein utilizing principle of protein-dye binding
    • Bradford, M.M., Rapid and sensitive method for quantitation of microgram quantities of protein utilizing principle of protein-dye binding. Anal. Biochem. 72 (1976), 248–254.
    • (1976) Anal. Biochem. , vol.72 , pp. 248-254
    • Bradford, M.M.1
  • 3
    • 0034704217 scopus 로고    scopus 로고
    • The structural basis for the action of the antibiotics tetracycline, pactamycin, and hygromycin B on the 30S ribosomal subunit
    • Brodersen, D.E., Clemons, W.M., Carter, A.P., Morgan-Warren, R.J., Wimberly, B.T., Ramakrishnan, V., The structural basis for the action of the antibiotics tetracycline, pactamycin, and hygromycin B on the 30S ribosomal subunit. Cell 103 (2000), 1143–1154.
    • (2000) Cell , vol.103 , pp. 1143-1154
    • Brodersen, D.E.1    Clemons, W.M.2    Carter, A.P.3    Morgan-Warren, R.J.4    Wimberly, B.T.5    Ramakrishnan, V.6
  • 4
    • 0037025378 scopus 로고    scopus 로고
    • EnvZ-OmpR interaction and osmoregulation in Escherichia coli
    • Cai, S.J., Inouye, M., EnvZ-OmpR interaction and osmoregulation in Escherichia coli. J. Biol. Chem. 277 (2002), 24155–24161.
    • (2002) J. Biol. Chem. , vol.277 , pp. 24155-24161
    • Cai, S.J.1    Inouye, M.2
  • 5
    • 84955452529 scopus 로고    scopus 로고
    • Comparative proteomic analysis of a potentially probiotic Lactobacillus pentosus MP-10 for the identification of key proteins involved in antibiotic resistance and biocide tolerance
    • Casado Munoz, MdC, Benomar, N., Ennahar, S., Horvatovich, P., Lavilla Lerma, L., Knapp, C.W., et al. Comparative proteomic analysis of a potentially probiotic Lactobacillus pentosus MP-10 for the identification of key proteins involved in antibiotic resistance and biocide tolerance. Int. J. Food Microbiol. 222 (2016), 8–15.
    • (2016) Int. J. Food Microbiol. , vol.222 , pp. 8-15
    • Casado Munoz, M.1    Benomar, N.2    Ennahar, S.3    Horvatovich, P.4    Lavilla Lerma, L.5    Knapp, C.W.6
  • 6
    • 0034973583 scopus 로고    scopus 로고
    • Tetracycline antibiotics: mode of action, applications, molecular biology, and epidemiology of bacterial resistance
    • (second page, table of contents)
    • Chopra, I., Roberts, M., Tetracycline antibiotics: mode of action, applications, molecular biology, and epidemiology of bacterial resistance. Microbiol. Mol. Biol. Rev. 65 (2001), 232–260 (second page, table of contents).
    • (2001) Microbiol. Mol. Biol. Rev. , vol.65 , pp. 232-260
    • Chopra, I.1    Roberts, M.2
  • 7
    • 0036752926 scopus 로고    scopus 로고
    • The HtrA family of proteases: implications for protein composition and cell fate
    • Clausen, T., Southan, C., Ehrmann, M., The HtrA family of proteases: implications for protein composition and cell fate. Mol. Cell 10 (2002), 443–455.
    • (2002) Mol. Cell , vol.10 , pp. 443-455
    • Clausen, T.1    Southan, C.2    Ehrmann, M.3
  • 9
    • 79958051292 scopus 로고    scopus 로고
    • Use of minocycline in viral infections
    • Dutta, K., Basu, A., Use of minocycline in viral infections. Indian J. Med. Res. 133 (2011), 467–470.
    • (2011) Indian J. Med. Res. , vol.133 , pp. 467-470
    • Dutta, K.1    Basu, A.2
  • 10
    • 79953063344 scopus 로고    scopus 로고
    • Complex binding of the FabR repressor of bacterial unsaturated fatty acid biosynthesis to its cognate promoters
    • Feng, Y., Cronan, J.E., Complex binding of the FabR repressor of bacterial unsaturated fatty acid biosynthesis to its cognate promoters. Mol. Microbiol. 80 (2011), 195–218.
    • (2011) Mol. Microbiol. , vol.80 , pp. 195-218
    • Feng, Y.1    Cronan, J.E.2
  • 11
    • 84862548484 scopus 로고    scopus 로고
    • Regulated assembly of the transenvelope protein complex required for lipopolysaccharide export
    • Freinkman, E., Okuda, S., Ruiz, N., Kahne, D., Regulated assembly of the transenvelope protein complex required for lipopolysaccharide export. Biochemistry 51 (2012), 4800–4806.
    • (2012) Biochemistry , vol.51 , pp. 4800-4806
    • Freinkman, E.1    Okuda, S.2    Ruiz, N.3    Kahne, D.4
  • 13
    • 0032828561 scopus 로고    scopus 로고
    • Scanning the available Dictyostelium discoideum proteome for O-linked GlcNAc glycosylation sites using neural networks
    • Gupta, R., Jung, E., Gooley, A.A., Williams, K.L., Brunak, S., Hansen, J., Scanning the available Dictyostelium discoideum proteome for O-linked GlcNAc glycosylation sites using neural networks. Glycobiology 9 (1999), 1009–1022.
    • (1999) Glycobiology , vol.9 , pp. 1009-1022
    • Gupta, R.1    Jung, E.2    Gooley, A.A.3    Williams, K.L.4    Brunak, S.5    Hansen, J.6
  • 14
    • 84881102933 scopus 로고    scopus 로고
    • Sulfur-34S stable isotope labeling of amino acids for quantification (SULAQ34) of proteomic changes in Pseudomonas fluorescens during naphthalene degradation
    • Herbst, F.-A., Taubert, M., Jehmlich, N., Behr, T., Schmidt, F., von Bergen, M., et al. Sulfur-34S stable isotope labeling of amino acids for quantification (SULAQ34) of proteomic changes in Pseudomonas fluorescens during naphthalene degradation. Mol. Cell. Proteomics 12 (2013), 2060–2069.
    • (2013) Mol. Cell. Proteomics , vol.12 , pp. 2060-2069
    • Herbst, F.-A.1    Taubert, M.2    Jehmlich, N.3    Behr, T.4    Schmidt, F.5    von Bergen, M.6
  • 15
    • 84955588367 scopus 로고    scopus 로고
    • Energy conversion, redox catalysis and generation of reactive oxygen species by respiratory complex I
    • Hirst, J., Roessler, M.M., Energy conversion, redox catalysis and generation of reactive oxygen species by respiratory complex I. BBA-Bioenergetics 1857 (2016), 872–883.
    • (2016) BBA-Bioenergetics , vol.1857 , pp. 872-883
    • Hirst, J.1    Roessler, M.M.2
  • 16
    • 58549112996 scopus 로고    scopus 로고
    • Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists
    • Huang, D.W., Sherman, B.T., Lempicki, R.A., Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists. Nucleic Acids Res. 37 (2009), 1–13.
    • (2009) Nucleic Acids Res. , vol.37 , pp. 1-13
    • Huang, D.W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 17
    • 61449172037 scopus 로고    scopus 로고
    • Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
    • Huang, D.W., Sherman, B.T., Lempicki, R.A., Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat. Protoc. 4 (2009), 44–57.
    • (2009) Nat. Protoc. , vol.4 , pp. 44-57
    • Huang, D.W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 18
    • 34248576306 scopus 로고    scopus 로고
    • NetPhosYeast: prediction of protein phosphorylation sites in yeast
    • Ingrell, C.R., Miller, M.L., Jensen, O.N., Blom, N., NetPhosYeast: prediction of protein phosphorylation sites in yeast. Bioinformatics 23 (2007), 895–897.
    • (2007) Bioinformatics , vol.23 , pp. 895-897
    • Ingrell, C.R.1    Miller, M.L.2    Jensen, O.N.3    Blom, N.4
  • 19
    • 84977585379 scopus 로고    scopus 로고
    • Different cellular origins and functions of extracellular proteins from Escherichia coli O157:H7 and O104:H4 as determined by comparative proteomic analysis
    • Islam, N., Nagy, A., Garrett, W.M., Shelton, D., Cooper, B., Nou, X., Different cellular origins and functions of extracellular proteins from Escherichia coli O157:H7 and O104:H4 as determined by comparative proteomic analysis. Appl. Environ. Microbiol. 82 (2016), 4371–4378.
    • (2016) Appl. Environ. Microbiol. , vol.82 , pp. 4371-4378
    • Islam, N.1    Nagy, A.2    Garrett, W.M.3    Shelton, D.4    Cooper, B.5    Nou, X.6
  • 21
    • 84858200759 scopus 로고    scopus 로고
    • A review of antibiotic use in food animals: perspective, policy, and potential
    • Landers, T.F., Cohen, B., Wittum, T.E., Larson, E.L., A review of antibiotic use in food animals: perspective, policy, and potential. Public Health Rep. 127 (2012), 4–22.
    • (2012) Public Health Rep. , vol.127 , pp. 4-22
    • Landers, T.F.1    Cohen, B.2    Wittum, T.E.3    Larson, E.L.4
  • 23
    • 84870243063 scopus 로고    scopus 로고
    • Cytoplasmic ATP hydrolysis powers transport of lipopolysaccharide across the periplasm in E. coli
    • Okuda, S., Freinkman, E., Kahne, D., Cytoplasmic ATP hydrolysis powers transport of lipopolysaccharide across the periplasm in E. coli. Science 338 (2012), 1214–1217.
    • (2012) Science , vol.338 , pp. 1214-1217
    • Okuda, S.1    Freinkman, E.2    Kahne, D.3
  • 24
    • 84988735737 scopus 로고    scopus 로고
    • Degradation of tris(2-chloroethyl) phosphate by ultraviolet-persulfate: kinetics, pathway and intermediate impact on proteome of Escherichia coli
    • Ou, H.S., Liu, J., Ye, J.S., Wang, L.L., Gao, N.Y., Ke, J., Degradation of tris(2-chloroethyl) phosphate by ultraviolet-persulfate: kinetics, pathway and intermediate impact on proteome of Escherichia coli. Chem. Eng. J. 308 (2017), 386–395.
    • (2017) Chem. Eng. J. , vol.308 , pp. 386-395
    • Ou, H.S.1    Liu, J.2    Ye, J.S.3    Wang, L.L.4    Gao, N.Y.5    Ke, J.6
  • 25
    • 84875958424 scopus 로고    scopus 로고
    • Bacterial lipids: metabolism and membrane homeostasis
    • Parsons, J.B., Rock, C., Bacterial lipids: metabolism and membrane homeostasis. Prog. Lipid Res. 52 (2013), 249–276.
    • (2013) Prog. Lipid Res. , vol.52 , pp. 249-276
    • Parsons, J.B.1    Rock, C.2
  • 26
    • 85010952220 scopus 로고    scopus 로고
    • Comparative proteomic analysis of 2-MCPD- and 3-MCPD-induced heart toxicity in the rat
    • Schultrich, K., Frenzel, F., Oberemm, A., Buhrke, T., Braeuning, A., Lampen, A., Comparative proteomic analysis of 2-MCPD- and 3-MCPD-induced heart toxicity in the rat. Arch. Toxicol. 91 (2017), 3145–3155.
    • (2017) Arch. Toxicol. , vol.91 , pp. 3145-3155
    • Schultrich, K.1    Frenzel, F.2    Oberemm, A.3    Buhrke, T.4    Braeuning, A.5    Lampen, A.6
  • 27
    • 0034281455 scopus 로고    scopus 로고
    • Comparison of fatty acid methyl ester (FAME) methods for characterizing microbial communities
    • Schutter, M.E., Dick, R.P., Comparison of fatty acid methyl ester (FAME) methods for characterizing microbial communities. Soil Sci. Soc. Am. J. 64 (2000), 1659–1668.
    • (2000) Soil Sci. Soc. Am. J. , vol.64 , pp. 1659-1668
    • Schutter, M.E.1    Dick, R.P.2
  • 28
    • 84940181301 scopus 로고    scopus 로고
    • Short branched-chain C6 carboxylic acids result in increased growth, novel ‘unnatural’ fatty acids and increased membrane fluidity in a Listeria monocytogenes branched-chain fatty acid-deficient mutant
    • Sen, S., Sirobhushanam, S., Hantak, M.P., Lawrence, P., Brenna, J.T., Gatto, C., et al. Short branched-chain C6 carboxylic acids result in increased growth, novel ‘unnatural’ fatty acids and increased membrane fluidity in a Listeria monocytogenes branched-chain fatty acid-deficient mutant. Biochim. Biophys. Acta, Mol. Cell Biol. Lipids 1851 (2015), 1406–1415.
    • (2015) Biochim. Biophys. Acta, Mol. Cell Biol. Lipids , vol.1851 , pp. 1406-1415
    • Sen, S.1    Sirobhushanam, S.2    Hantak, M.P.3    Lawrence, P.4    Brenna, J.T.5    Gatto, C.6
  • 29
    • 84862497458 scopus 로고    scopus 로고
    • PMeS: prediction of methylation sites based on enhanced feature encoding scheme
    • Shi, S.-P., Qiu, J.-D., Sun, X.-Y., Suo, S.-B., Huang, S.-Y., Liang, R.-P., PMeS: prediction of methylation sites based on enhanced feature encoding scheme. PLoS One, 7, 2012.
    • (2012) PLoS One , vol.7
    • Shi, S.-P.1    Qiu, J.-D.2    Sun, X.-Y.3    Suo, S.-B.4    Huang, S.-Y.5    Liang, R.-P.6
  • 30
    • 46049106143 scopus 로고    scopus 로고
    • Functional analysis of the protein machinery required for transport of lipopolysaccharide to the outer membrane of Escherichia coli
    • Sperandeo, P., Lau, F.K., Carpentieri, A., De Castro, C., Molinaro, A., Deho, G., et al. Functional analysis of the protein machinery required for transport of lipopolysaccharide to the outer membrane of Escherichia coli. J. Bacteriol. 190 (2008), 4460–4469.
    • (2008) J. Bacteriol. , vol.190 , pp. 4460-4469
    • Sperandeo, P.1    Lau, F.K.2    Carpentieri, A.3    De Castro, C.4    Molinaro, A.5    Deho, G.6
  • 31
    • 0035086501 scopus 로고    scopus 로고
    • Antibiotic susceptibility profiles of Escherichia coli strains lacking multidrug efflux pump genes
    • Sulavik, M.C., Houseweart, C., Cramer, C., Jiwani, N., Murgolo, N., Greene, J., et al. Antibiotic susceptibility profiles of Escherichia coli strains lacking multidrug efflux pump genes. Antimicrob. Agents Chemother. 45 (2001), 1126–1136.
    • (2001) Antimicrob. Agents Chemother. , vol.45 , pp. 1126-1136
    • Sulavik, M.C.1    Houseweart, C.2    Cramer, C.3    Jiwani, N.4    Murgolo, N.5    Greene, J.6
  • 32
    • 84901636378 scopus 로고    scopus 로고
    • The Salmonella enterica serovar Typhi ltrR-ompR-ompC-ompF genes are involved in resistance to the bile salt sodium deoxycholate and in bacterial transformation
    • Villarreal, J.M., Becerra-Lobato, N., Rebollar-Flores, J.E., Medina-Aparicio, L., Carbajal-Gomez, E., Zavala-Garcia, M.L., et al. The Salmonella enterica serovar Typhi ltrR-ompR-ompC-ompF genes are involved in resistance to the bile salt sodium deoxycholate and in bacterial transformation. Mol. Microbiol. 92 (2014), 1005–1024.
    • (2014) Mol. Microbiol. , vol.92 , pp. 1005-1024
    • Villarreal, J.M.1    Becerra-Lobato, N.2    Rebollar-Flores, J.E.3    Medina-Aparicio, L.4    Carbajal-Gomez, E.5    Zavala-Garcia, M.L.6
  • 33
    • 4544303329 scopus 로고    scopus 로고
    • Functional replacement of the FabA and FabB proteins of Escherichia coli fatty acid synthesis by Enterococcus faecalis FabZ and FabF homologues
    • Wang, H.H., Cronan, J.E., Functional replacement of the FabA and FabB proteins of Escherichia coli fatty acid synthesis by Enterococcus faecalis FabZ and FabF homologues. J. Biol. Chem. 279 (2004), 34489–34495.
    • (2004) J. Biol. Chem. , vol.279 , pp. 34489-34495
    • Wang, H.H.1    Cronan, J.E.2
  • 34
    • 84864751101 scopus 로고    scopus 로고
    • Inhibition of lipopolysaccharide transport to the outer membrane in Pseudomonas aeruginosa by peptidomimetic antibiotics
    • Werneburg, M., Zerbe, K., Juhas, M., Bigler, L., Stalder, U., Kaech, A., et al. Inhibition of lipopolysaccharide transport to the outer membrane in Pseudomonas aeruginosa by peptidomimetic antibiotics. Chembiochem 13 (2012), 1767–1775.
    • (2012) Chembiochem , vol.13 , pp. 1767-1775
    • Werneburg, M.1    Zerbe, K.2    Juhas, M.3    Bigler, L.4    Stalder, U.5    Kaech, A.6
  • 35
    • 32144435450 scopus 로고    scopus 로고
    • Analysis of outer membrane proteome of Escherichia coli related to resistance to ampicillin and tetracycline
    • Xu, C.X., Lin, X.M., Ren, H.X., Zhang, Y.L., Wang, S.Y., Peng, X.X., Analysis of outer membrane proteome of Escherichia coli related to resistance to ampicillin and tetracycline. Proteomics 6 (2006), 462–473.
    • (2006) Proteomics , vol.6 , pp. 462-473
    • Xu, C.X.1    Lin, X.M.2    Ren, H.X.3    Zhang, Y.L.4    Wang, S.Y.5    Peng, X.X.6
  • 36
    • 85011580040 scopus 로고    scopus 로고
    • iTRAQ-based quantitative proteomic analysis of the global response to 17 beta-estradiol in estrogen-degradation strain Pseudomonas putida SJTE-1
    • Xu, J., Zhang, L., Hou, J., Wang, X., Liu, H., Zheng, D., et al. iTRAQ-based quantitative proteomic analysis of the global response to 17 beta-estradiol in estrogen-degradation strain Pseudomonas putida SJTE-1. Sci. Rep., 7, 2017.
    • (2017) Sci. Rep. , vol.7
    • Xu, J.1    Zhang, L.2    Hou, J.3    Wang, X.4    Liu, H.5    Zheng, D.6
  • 37
    • 79951575752 scopus 로고    scopus 로고
    • Effects of fatty acid unsaturation numbers on membrane fluidity and α-secretase-dependent amyloid precursor protein processing
    • Yang, X., Sheng, W., Sun, G.Y., Lee, J.C.M., Effects of fatty acid unsaturation numbers on membrane fluidity and α-secretase-dependent amyloid precursor protein processing. Neurochem. Int. 58 (2011), 321–329.
    • (2011) Neurochem. Int. , vol.58 , pp. 321-329
    • Yang, X.1    Sheng, W.2    Sun, G.Y.3    Lee, J.C.M.4
  • 38
    • 85000634300 scopus 로고    scopus 로고
    • Influence of perfluorooctanoic acid on proteomic expression and cell membrane fatty acid of Escherichia coli
    • Yang, M., Ye, J., Qin, H., Long, Y., Li, Y., Influence of perfluorooctanoic acid on proteomic expression and cell membrane fatty acid of Escherichia coli. Environ. Pollut. 220 (2017), 532–539.
    • (2017) Environ. Pollut. , vol.220 , pp. 532-539
    • Yang, M.1    Ye, J.2    Qin, H.3    Long, Y.4    Li, Y.5
  • 39
    • 50549085091 scopus 로고    scopus 로고
    • Functional characterisation of altered outer membrane proteins for tetracycline resistance in Escherichia coli
    • Zhang, D.-F., Jiang, B., Xiang, Z.-M., Wang, S.-Y., Functional characterisation of altered outer membrane proteins for tetracycline resistance in Escherichia coli. Int. J. Antimicrob. Agents 32 (2008), 315–319.
    • (2008) Int. J. Antimicrob. Agents , vol.32 , pp. 315-319
    • Zhang, D.-F.1    Jiang, B.2    Xiang, Z.-M.3    Wang, S.-Y.4


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